Wall clock time and date at job start Tue Mar 31 2020 11:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00144 * 2 1 4 4 C 1.46902 * 110.99993 * 123.95704 * 2 1 3 5 5 C 1.50697 * 109.46993 * 169.99743 * 4 2 1 6 6 C 1.38383 * 119.92941 * 90.00036 * 5 4 2 7 7 C 1.38330 * 120.29482 * 179.71915 * 6 5 4 8 8 C 1.37976 * 120.14534 * 0.30209 * 7 6 5 9 9 C 1.39552 * 119.85427 * 359.97282 * 8 7 6 10 10 C 1.47844 * 120.14804 * 179.97438 * 9 8 7 11 11 O 1.21556 * 120.00118 * 173.02080 * 10 9 8 12 12 N 1.34776 * 119.99740 * 353.02385 * 10 9 8 13 13 C 1.47019 * 125.65089 * 5.45575 * 12 10 9 14 14 C 1.54335 * 107.26570 * 178.84968 * 13 12 10 15 15 C 1.55150 * 103.02294 * 338.13747 * 14 13 12 16 16 H 1.09001 * 111.00702 * 277.23508 * 15 14 13 17 17 N 1.46495 * 111.00541 * 153.38132 * 15 14 13 18 18 C 1.36943 * 120.00354 * 161.35438 * 17 15 14 19 19 H 1.07991 * 119.99456 * 359.97438 * 18 17 15 20 20 C 1.38811 * 120.00017 * 180.02562 * 18 17 15 21 21 N 1.31614 * 119.99966 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99964 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47309 * 59.99309 * 22 20 18 24 24 H 1.48494 * 109.47304 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46715 * 299.99507 * 22 20 18 26 26 C 1.47429 * 125.64596 * 185.76262 * 12 10 9 27 27 C 1.37941 * 119.93041 * 270.27134 * 5 4 2 28 28 H 1.09000 * 109.47100 * 296.04732 * 1 2 3 29 29 H 1.08999 * 109.46724 * 56.04637 * 1 2 3 30 30 H 1.09003 * 109.47115 * 176.04526 * 1 2 3 31 31 H 1.09000 * 109.46812 * 183.95271 * 3 2 1 32 32 H 1.09003 * 109.47300 * 303.95265 * 3 2 1 33 33 H 1.09003 * 109.47084 * 63.95848 * 3 2 1 34 34 H 1.08997 * 109.47250 * 49.99638 * 4 2 1 35 35 H 1.09000 * 109.46565 * 289.99917 * 4 2 1 36 36 H 1.08001 * 119.84837 * 359.97438 * 6 5 4 37 37 H 1.07999 * 119.92962 * 180.27224 * 7 6 5 38 38 H 1.08001 * 120.07233 * 179.97438 * 8 7 6 39 39 H 1.08999 * 109.88374 * 298.39412 * 13 12 10 40 40 H 1.09005 * 109.87886 * 59.56145 * 13 12 10 41 41 H 1.09010 * 110.84856 * 219.67171 * 14 13 12 42 42 H 1.08995 * 110.51526 * 96.45622 * 14 13 12 43 43 H 0.97000 * 120.00178 * 341.35103 * 17 15 14 44 44 H 0.97003 * 119.99836 * 180.02562 * 21 20 18 45 45 H 1.08996 * 110.36844 * 322.92862 * 26 12 10 46 46 H 1.08994 * 110.36844 * 85.14537 * 26 12 10 47 47 H 1.07997 * 120.06932 * 0.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1376 5 6 3.4817 -0.9526 0.9728 6 6 4.3572 -0.0167 1.4950 7 6 5.7230 -0.1834 1.3532 8 6 6.2212 -1.2823 0.6837 9 6 5.3437 -2.2269 0.1496 10 6 5.8704 -3.4064 -0.5695 11 8 5.1145 -4.2905 -0.9225 12 7 7.1886 -3.5015 -0.8334 13 6 8.2251 -2.5680 -0.3688 14 6 9.5803 -3.0924 -0.8888 15 6 9.2973 -4.5957 -1.1480 16 1 9.3846 -5.1740 -0.2281 17 7 10.1854 -5.1260 -2.1854 18 6 10.3735 -6.4776 -2.3004 19 1 9.8675 -7.1524 -1.6261 20 6 11.2154 -6.9800 -3.2831 21 7 11.8325 -6.1574 -4.1045 22 14 11.4715 -8.8236 -3.4404 23 1 10.1690 -9.4829 -3.7125 24 1 12.4086 -9.0996 -4.5588 25 1 12.0401 -9.3541 -2.1753 26 6 7.8293 -4.5553 -1.6413 27 6 3.9665 -2.0530 0.2968 28 1 -0.3633 0.4513 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0828 1.3431 -0.0708 32 1 1.5899 1.9163 -0.8525 33 1 1.7045 1.8723 0.9234 34 1 1.5090 -1.7407 1.1756 35 1 1.7975 -0.2248 2.0627 36 1 3.9723 0.8455 2.0193 37 1 6.4010 0.5484 1.7670 38 1 7.2878 -1.4110 0.5733 39 1 8.0329 -1.5721 -0.7680 40 1 8.2349 -2.5375 0.7207 41 1 10.3584 -2.9708 -0.1351 42 1 9.8559 -2.5867 -1.8142 43 1 10.6401 -4.5198 -2.7908 44 1 12.4206 -6.5085 -4.7914 45 1 7.3438 -5.5153 -1.4663 46 1 7.7900 -4.2985 -2.6998 47 1 3.2821 -2.7801 -0.1145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019810838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:00 Heat of formation + Delta-G solvation = 39.519192 kcal Electronic energy + Delta-G solvation = -26027.976205 eV Core-core repulsion = 22405.062917 eV Total energy + Delta-G solvation = -3622.913288 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.51129 -39.06683 -37.38187 -37.02238 -34.27743 -32.37133 -31.48470 -31.04486 -29.73297 -27.99548 -27.91968 -26.71904 -24.81654 -23.37616 -22.93167 -22.25881 -21.17795 -20.22704 -19.49958 -17.43502 -16.92959 -16.40526 -16.13012 -15.89359 -15.78805 -15.44593 -14.94920 -14.60236 -14.50031 -14.15775 -13.96545 -13.48314 -13.37518 -13.06216 -12.86846 -12.75187 -12.69770 -12.42102 -12.37686 -12.14873 -12.13273 -11.87261 -11.72952 -11.38087 -11.10983 -10.95405 -10.75082 -10.59230 -10.33491 -10.02625 -9.77302 -9.69618 -9.08517 -9.05670 -9.00536 -8.66550 -8.34803 -7.08492 -5.83870 -3.14730 0.77807 1.18841 2.88820 3.17081 3.42956 3.47441 3.48557 3.59725 3.94118 4.42970 4.47042 4.54640 4.64208 4.76637 4.80208 4.92367 4.96365 4.97926 5.07807 5.13727 5.15258 5.23161 5.25976 5.35503 5.38752 5.45632 5.51725 5.59027 5.61977 5.72273 5.75380 5.82405 5.90462 6.10067 6.18854 6.22097 6.23877 6.30928 6.35560 6.51510 6.58809 6.63631 6.65244 6.75937 6.87918 7.65914 7.75438 8.33233 8.36544 9.45803 9.98432 10.33383 11.38067 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027801 B = 0.002357 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.904793 B =11877.266097 C =12427.900343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.543 5.543 3 C 0.020 3.980 4 C 0.095 3.905 5 C -0.093 4.093 6 C -0.094 4.094 7 C -0.130 4.130 8 C -0.123 4.123 9 C -0.124 4.124 10 C 0.566 3.434 11 O -0.542 6.542 12 N -0.607 5.607 13 C 0.095 3.905 14 C -0.143 4.143 15 C 0.172 3.828 16 H 0.065 0.935 17 N -0.712 5.712 18 C -0.249 4.249 19 H 0.072 0.928 20 C -0.009 4.009 21 N -0.931 5.931 22 Si 0.909 3.091 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.081 3.919 27 C -0.040 4.040 28 H 0.025 0.975 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.119 0.881 37 H 0.127 0.873 38 H 0.163 0.837 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.387 0.613 44 H 0.257 0.743 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.834 18.251 13.223 28.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.266 5.266 3 C -0.128 4.128 4 C -0.032 4.032 5 C -0.093 4.093 6 C -0.113 4.113 7 C -0.148 4.148 8 C -0.141 4.141 9 C -0.127 4.127 10 C 0.355 3.645 11 O -0.420 6.420 12 N -0.340 5.340 13 C -0.028 4.028 14 C -0.182 4.182 15 C 0.060 3.940 16 H 0.083 0.917 17 N -0.352 5.352 18 C -0.379 4.379 19 H 0.090 0.910 20 C -0.205 4.205 21 N -0.578 5.578 22 Si 0.740 3.260 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.211 1.211 26 C -0.044 4.044 27 C -0.060 4.060 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.137 0.863 37 H 0.145 0.855 38 H 0.180 0.820 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.222 0.778 44 H 0.067 0.933 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.116 17.340 12.591 27.425 hybrid contribution -0.030 -0.263 0.339 0.431 sum -17.146 17.077 12.930 27.437 Atomic orbital electron populations 1.22400 0.86933 1.02544 1.00496 1.61961 1.07815 1.14099 1.42751 1.22480 1.01612 0.88438 1.00267 1.21055 0.91378 0.99158 0.91618 1.19606 0.94878 0.95293 0.99569 1.21213 0.93497 0.98044 0.98578 1.21098 0.95182 0.98268 1.00206 1.22854 1.02596 0.93171 0.95484 1.19977 0.94304 0.96250 1.02194 1.17975 0.80872 0.86048 0.79560 1.90766 1.56516 1.40765 1.53977 1.48403 1.05314 1.28532 1.51780 1.22483 0.88374 0.93282 0.98686 1.22989 0.94933 0.98129 1.02157 1.21307 0.88077 0.91499 0.93124 0.91719 1.42292 1.51493 1.05129 1.36249 1.19211 1.22628 0.83116 1.12991 0.90968 1.24769 0.99626 0.97941 0.98170 1.69647 1.33484 1.33399 1.21270 0.86239 0.77626 0.84979 0.77173 1.21071 1.21638 1.21131 1.23462 0.95887 0.90089 0.94913 1.21103 0.94041 0.96452 0.94373 0.95686 0.91177 0.91121 0.90801 0.91380 0.95732 0.89617 0.93792 0.86268 0.85528 0.82036 0.90817 0.90726 0.89966 0.90252 0.77825 0.93293 0.90852 0.91268 0.84771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.57 60.07 0.57 0.74 16 2 N -0.54 -4.79 5.01 -252.72 -1.27 -6.06 16 3 C 0.02 0.15 9.13 60.06 0.55 0.70 16 4 C 0.10 0.81 5.11 -4.98 -0.03 0.79 16 5 C -0.09 -0.95 4.88 -104.68 -0.51 -1.46 16 6 C -0.09 -0.83 7.96 -39.49 -0.31 -1.14 16 7 C -0.13 -1.15 10.03 -39.64 -0.40 -1.55 16 8 C -0.12 -1.34 8.61 -39.19 -0.34 -1.68 16 9 C -0.12 -1.71 5.87 -104.97 -0.62 -2.33 16 10 C 0.57 9.76 7.81 -12.33 -0.10 9.67 16 11 O -0.54 -11.29 16.60 5.32 0.09 -11.20 16 12 N -0.61 -9.89 3.33 -175.72 -0.58 -10.47 16 13 C 0.09 1.17 4.87 -3.06 -0.01 1.16 16 14 C -0.14 -2.05 6.57 -24.89 -0.16 -2.22 16 15 C 0.17 3.27 3.69 -65.78 -0.24 3.03 16 16 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 17 N -0.71 -17.11 5.28 -51.35 -0.27 -17.38 16 18 C -0.25 -6.74 9.98 -15.06 -0.15 -6.89 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 21 N -0.93 -27.47 13.06 55.49 0.72 -26.75 16 22 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 C 0.08 1.56 6.63 -2.52 -0.02 1.54 16 27 C -0.04 -0.52 9.24 -39.18 -0.36 -0.88 16 28 H 0.02 0.15 8.14 -51.93 -0.42 -0.28 16 29 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 30 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 31 H 0.07 0.60 6.16 -51.93 -0.32 0.28 16 32 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 33 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 34 H 0.09 0.71 8.01 -51.93 -0.42 0.29 16 35 H 0.04 0.32 8.06 -51.93 -0.42 -0.10 16 36 H 0.12 0.78 8.03 -52.49 -0.42 0.36 16 37 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.16 1.53 2.75 -57.80 -0.16 1.37 16 39 H 0.07 0.78 6.75 -51.93 -0.35 0.43 16 40 H 0.07 0.77 6.73 -51.93 -0.35 0.42 16 41 H 0.08 1.04 8.14 -51.92 -0.42 0.62 16 42 H 0.08 1.16 8.00 -51.93 -0.42 0.74 16 43 H 0.39 9.79 7.71 -40.82 -0.31 9.47 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.07 1.54 7.98 -51.93 -0.41 1.12 16 46 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 47 H 0.13 1.84 7.67 -52.49 -0.40 1.43 16 LS Contribution 376.71 15.07 5.68 5.68 Total: -1.00 -32.57 376.71 -10.20 -42.77 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -7.33 Total: 7.10 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -2.22 Total: -0.86 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: -1.40 Total: -60.66 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.57 -10.20 -42.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019810838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.289 kcal (2) G-P(sol) polarization free energy of solvation -32.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds