Wall clock time and date at job start Tue Mar 31 2020 11:38:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46902 * 1
3 3 C 1.46898 * 111.00144 * 2 1
4 4 C 1.46902 * 110.99993 * 123.95704 * 2 1 3
5 5 C 1.50697 * 109.46993 * 169.99743 * 4 2 1
6 6 C 1.38383 * 119.92941 * 90.00036 * 5 4 2
7 7 C 1.38330 * 120.29482 * 179.71915 * 6 5 4
8 8 C 1.37976 * 120.14534 * 0.30209 * 7 6 5
9 9 C 1.39552 * 119.85427 * 359.97282 * 8 7 6
10 10 C 1.47844 * 120.14804 * 179.97438 * 9 8 7
11 11 O 1.21556 * 120.00118 * 173.02080 * 10 9 8
12 12 N 1.34776 * 119.99740 * 353.02385 * 10 9 8
13 13 C 1.47019 * 125.65089 * 5.45575 * 12 10 9
14 14 C 1.54335 * 107.26570 * 178.84968 * 13 12 10
15 15 C 1.55150 * 103.02294 * 338.13747 * 14 13 12
16 16 H 1.09001 * 111.00702 * 277.23508 * 15 14 13
17 17 N 1.46495 * 111.00541 * 153.38132 * 15 14 13
18 18 C 1.36943 * 120.00354 * 161.35438 * 17 15 14
19 19 H 1.07991 * 119.99456 * 359.97438 * 18 17 15
20 20 C 1.38811 * 120.00017 * 180.02562 * 18 17 15
21 21 N 1.31614 * 119.99966 * 359.97438 * 20 18 17
22 22 Si 1.86799 * 119.99964 * 180.02562 * 20 18 17
23 23 H 1.48500 * 109.47309 * 59.99309 * 22 20 18
24 24 H 1.48494 * 109.47304 * 179.97438 * 22 20 18
25 25 H 1.48502 * 109.46715 * 299.99507 * 22 20 18
26 26 C 1.47429 * 125.64596 * 185.76262 * 12 10 9
27 27 C 1.37941 * 119.93041 * 270.27134 * 5 4 2
28 28 H 1.09000 * 109.47100 * 296.04732 * 1 2 3
29 29 H 1.08999 * 109.46724 * 56.04637 * 1 2 3
30 30 H 1.09003 * 109.47115 * 176.04526 * 1 2 3
31 31 H 1.09000 * 109.46812 * 183.95271 * 3 2 1
32 32 H 1.09003 * 109.47300 * 303.95265 * 3 2 1
33 33 H 1.09003 * 109.47084 * 63.95848 * 3 2 1
34 34 H 1.08997 * 109.47250 * 49.99638 * 4 2 1
35 35 H 1.09000 * 109.46565 * 289.99917 * 4 2 1
36 36 H 1.08001 * 119.84837 * 359.97438 * 6 5 4
37 37 H 1.07999 * 119.92962 * 180.27224 * 7 6 5
38 38 H 1.08001 * 120.07233 * 179.97438 * 8 7 6
39 39 H 1.08999 * 109.88374 * 298.39412 * 13 12 10
40 40 H 1.09005 * 109.87886 * 59.56145 * 13 12 10
41 41 H 1.09010 * 110.84856 * 219.67171 * 14 13 12
42 42 H 1.08995 * 110.51526 * 96.45622 * 14 13 12
43 43 H 0.97000 * 120.00178 * 341.35103 * 17 15 14
44 44 H 0.97003 * 119.99836 * 180.02562 * 21 20 18
45 45 H 1.08996 * 110.36844 * 322.92862 * 26 12 10
46 46 H 1.08994 * 110.36844 * 85.14537 * 26 12 10
47 47 H 1.07997 * 120.06932 * 0.02562 * 27 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.9955 -0.7661 1.1376
5 6 3.4817 -0.9526 0.9728
6 6 4.3572 -0.0167 1.4950
7 6 5.7230 -0.1834 1.3532
8 6 6.2212 -1.2823 0.6837
9 6 5.3437 -2.2269 0.1496
10 6 5.8704 -3.4064 -0.5695
11 8 5.1145 -4.2905 -0.9225
12 7 7.1886 -3.5015 -0.8334
13 6 8.2251 -2.5680 -0.3688
14 6 9.5803 -3.0924 -0.8888
15 6 9.2973 -4.5957 -1.1480
16 1 9.3846 -5.1740 -0.2281
17 7 10.1854 -5.1260 -2.1854
18 6 10.3735 -6.4776 -2.3004
19 1 9.8675 -7.1524 -1.6261
20 6 11.2154 -6.9800 -3.2831
21 7 11.8325 -6.1574 -4.1045
22 14 11.4715 -8.8236 -3.4404
23 1 10.1690 -9.4829 -3.7125
24 1 12.4086 -9.0996 -4.5588
25 1 12.0401 -9.3541 -2.1753
26 6 7.8293 -4.5553 -1.6413
27 6 3.9665 -2.0530 0.2968
28 1 -0.3633 0.4513 0.9233
29 1 -0.3633 0.5740 -0.8524
30 1 -0.3633 -1.0252 -0.0709
31 1 3.0828 1.3431 -0.0708
32 1 1.5899 1.9163 -0.8525
33 1 1.7045 1.8723 0.9234
34 1 1.5090 -1.7407 1.1756
35 1 1.7975 -0.2248 2.0627
36 1 3.9723 0.8455 2.0193
37 1 6.4010 0.5484 1.7670
38 1 7.2878 -1.4110 0.5733
39 1 8.0329 -1.5721 -0.7680
40 1 8.2349 -2.5375 0.7207
41 1 10.3584 -2.9708 -0.1351
42 1 9.8559 -2.5867 -1.8142
43 1 10.6401 -4.5198 -2.7908
44 1 12.4206 -6.5085 -4.7914
45 1 7.3438 -5.5153 -1.4663
46 1 7.7900 -4.2985 -2.6998
47 1 3.2821 -2.7801 -0.1145
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001019810838.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:38:00
Heat of formation + Delta-G solvation = 39.519192 kcal
Electronic energy + Delta-G solvation = -26027.976205 eV
Core-core repulsion = 22405.062917 eV
Total energy + Delta-G solvation = -3622.913288 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 317.184 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-40.51129 -39.06683 -37.38187 -37.02238 -34.27743 -32.37133 -31.48470 -31.04486
-29.73297 -27.99548 -27.91968 -26.71904 -24.81654 -23.37616 -22.93167 -22.25881
-21.17795 -20.22704 -19.49958 -17.43502 -16.92959 -16.40526 -16.13012 -15.89359
-15.78805 -15.44593 -14.94920 -14.60236 -14.50031 -14.15775 -13.96545 -13.48314
-13.37518 -13.06216 -12.86846 -12.75187 -12.69770 -12.42102 -12.37686 -12.14873
-12.13273 -11.87261 -11.72952 -11.38087 -11.10983 -10.95405 -10.75082 -10.59230
-10.33491 -10.02625 -9.77302 -9.69618 -9.08517 -9.05670 -9.00536 -8.66550
-8.34803 -7.08492 -5.83870 -3.14730 0.77807 1.18841 2.88820 3.17081
3.42956 3.47441 3.48557 3.59725 3.94118 4.42970 4.47042 4.54640
4.64208 4.76637 4.80208 4.92367 4.96365 4.97926 5.07807 5.13727
5.15258 5.23161 5.25976 5.35503 5.38752 5.45632 5.51725 5.59027
5.61977 5.72273 5.75380 5.82405 5.90462 6.10067 6.18854 6.22097
6.23877 6.30928 6.35560 6.51510 6.58809 6.63631 6.65244 6.75937
6.87918 7.65914 7.75438 8.33233 8.36544 9.45803 9.98432 10.33383
11.38067
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.027801 B = 0.002357 C = 0.002252
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1006.904793 B =11877.266097 C =12427.900343
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 N -0.543 5.543
3 C 0.020 3.980
4 C 0.095 3.905
5 C -0.093 4.093
6 C -0.094 4.094
7 C -0.130 4.130
8 C -0.123 4.123
9 C -0.124 4.124
10 C 0.566 3.434
11 O -0.542 6.542
12 N -0.607 5.607
13 C 0.095 3.905
14 C -0.143 4.143
15 C 0.172 3.828
16 H 0.065 0.935
17 N -0.712 5.712
18 C -0.249 4.249
19 H 0.072 0.928
20 C -0.009 4.009
21 N -0.931 5.931
22 Si 0.909 3.091
23 H -0.284 1.284
24 H -0.291 1.291
25 H -0.285 1.285
26 C 0.081 3.919
27 C -0.040 4.040
28 H 0.025 0.975
29 H 0.069 0.931
30 H 0.070 0.930
31 H 0.073 0.927
32 H 0.067 0.933
33 H 0.024 0.976
34 H 0.085 0.915
35 H 0.044 0.956
36 H 0.119 0.881
37 H 0.127 0.873
38 H 0.163 0.837
39 H 0.074 0.926
40 H 0.075 0.925
41 H 0.082 0.918
42 H 0.079 0.921
43 H 0.387 0.613
44 H 0.257 0.743
45 H 0.073 0.927
46 H 0.069 0.931
47 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.834 18.251 13.223 28.131
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 N -0.266 5.266
3 C -0.128 4.128
4 C -0.032 4.032
5 C -0.093 4.093
6 C -0.113 4.113
7 C -0.148 4.148
8 C -0.141 4.141
9 C -0.127 4.127
10 C 0.355 3.645
11 O -0.420 6.420
12 N -0.340 5.340
13 C -0.028 4.028
14 C -0.182 4.182
15 C 0.060 3.940
16 H 0.083 0.917
17 N -0.352 5.352
18 C -0.379 4.379
19 H 0.090 0.910
20 C -0.205 4.205
21 N -0.578 5.578
22 Si 0.740 3.260
23 H -0.211 1.211
24 H -0.216 1.216
25 H -0.211 1.211
26 C -0.044 4.044
27 C -0.060 4.060
28 H 0.043 0.957
29 H 0.088 0.912
30 H 0.089 0.911
31 H 0.092 0.908
32 H 0.086 0.914
33 H 0.043 0.957
34 H 0.104 0.896
35 H 0.062 0.938
36 H 0.137 0.863
37 H 0.145 0.855
38 H 0.180 0.820
39 H 0.092 0.908
40 H 0.093 0.907
41 H 0.100 0.900
42 H 0.097 0.903
43 H 0.222 0.778
44 H 0.067 0.933
45 H 0.091 0.909
46 H 0.087 0.913
47 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges -17.116 17.340 12.591 27.425
hybrid contribution -0.030 -0.263 0.339 0.431
sum -17.146 17.077 12.930 27.437
Atomic orbital electron populations
1.22400 0.86933 1.02544 1.00496 1.61961 1.07815 1.14099 1.42751
1.22480 1.01612 0.88438 1.00267 1.21055 0.91378 0.99158 0.91618
1.19606 0.94878 0.95293 0.99569 1.21213 0.93497 0.98044 0.98578
1.21098 0.95182 0.98268 1.00206 1.22854 1.02596 0.93171 0.95484
1.19977 0.94304 0.96250 1.02194 1.17975 0.80872 0.86048 0.79560
1.90766 1.56516 1.40765 1.53977 1.48403 1.05314 1.28532 1.51780
1.22483 0.88374 0.93282 0.98686 1.22989 0.94933 0.98129 1.02157
1.21307 0.88077 0.91499 0.93124 0.91719 1.42292 1.51493 1.05129
1.36249 1.19211 1.22628 0.83116 1.12991 0.90968 1.24769 0.99626
0.97941 0.98170 1.69647 1.33484 1.33399 1.21270 0.86239 0.77626
0.84979 0.77173 1.21071 1.21638 1.21131 1.23462 0.95887 0.90089
0.94913 1.21103 0.94041 0.96452 0.94373 0.95686 0.91177 0.91121
0.90801 0.91380 0.95732 0.89617 0.93792 0.86268 0.85528 0.82036
0.90817 0.90726 0.89966 0.90252 0.77825 0.93293 0.90852 0.91268
0.84771
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.17 9.57 60.07 0.57 0.74 16
2 N -0.54 -4.79 5.01 -252.72 -1.27 -6.06 16
3 C 0.02 0.15 9.13 60.06 0.55 0.70 16
4 C 0.10 0.81 5.11 -4.98 -0.03 0.79 16
5 C -0.09 -0.95 4.88 -104.68 -0.51 -1.46 16
6 C -0.09 -0.83 7.96 -39.49 -0.31 -1.14 16
7 C -0.13 -1.15 10.03 -39.64 -0.40 -1.55 16
8 C -0.12 -1.34 8.61 -39.19 -0.34 -1.68 16
9 C -0.12 -1.71 5.87 -104.97 -0.62 -2.33 16
10 C 0.57 9.76 7.81 -12.33 -0.10 9.67 16
11 O -0.54 -11.29 16.60 5.32 0.09 -11.20 16
12 N -0.61 -9.89 3.33 -175.72 -0.58 -10.47 16
13 C 0.09 1.17 4.87 -3.06 -0.01 1.16 16
14 C -0.14 -2.05 6.57 -24.89 -0.16 -2.22 16
15 C 0.17 3.27 3.69 -65.78 -0.24 3.03 16
16 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16
17 N -0.71 -17.11 5.28 -51.35 -0.27 -17.38 16
18 C -0.25 -6.74 9.98 -15.06 -0.15 -6.89 16
19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16
20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16
21 N -0.93 -27.47 13.06 55.49 0.72 -26.75 16
22 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16
23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16
24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
26 C 0.08 1.56 6.63 -2.52 -0.02 1.54 16
27 C -0.04 -0.52 9.24 -39.18 -0.36 -0.88 16
28 H 0.02 0.15 8.14 -51.93 -0.42 -0.28 16
29 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16
30 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16
31 H 0.07 0.60 6.16 -51.93 -0.32 0.28 16
32 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16
33 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16
34 H 0.09 0.71 8.01 -51.93 -0.42 0.29 16
35 H 0.04 0.32 8.06 -51.93 -0.42 -0.10 16
36 H 0.12 0.78 8.03 -52.49 -0.42 0.36 16
37 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16
38 H 0.16 1.53 2.75 -57.80 -0.16 1.37 16
39 H 0.07 0.78 6.75 -51.93 -0.35 0.43 16
40 H 0.07 0.77 6.73 -51.93 -0.35 0.42 16
41 H 0.08 1.04 8.14 -51.92 -0.42 0.62 16
42 H 0.08 1.16 8.00 -51.93 -0.42 0.74 16
43 H 0.39 9.79 7.71 -40.82 -0.31 9.47 16
44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
45 H 0.07 1.54 7.98 -51.93 -0.41 1.12 16
46 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16
47 H 0.13 1.84 7.67 -52.49 -0.40 1.43 16
LS Contribution 376.71 15.07 5.68 5.68
Total: -1.00 -32.57 376.71 -10.20 -42.77
By element:
Atomic # 1 Polarization: 14.43 SS G_CDS: -7.33 Total: 7.10 kcal
Atomic # 6 Polarization: 1.36 SS G_CDS: -2.22 Total: -0.86 kcal
Atomic # 7 Polarization: -59.26 SS G_CDS: -1.40 Total: -60.66 kcal
Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.20 kcal
Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal
Total LS contribution 5.68 Total: 5.68 kcal
Total: -32.57 -10.20 -42.77 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001019810838.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 82.289 kcal
(2) G-P(sol) polarization free energy of solvation -32.565 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.724 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.205 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.770 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.519 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds