Wall clock time and date at job start Tue Mar 31 2020 11:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00144 * 2 1 4 4 C 1.46902 * 110.99993 * 123.95704 * 2 1 3 5 5 C 1.50697 * 109.46993 * 169.99743 * 4 2 1 6 6 C 1.38383 * 119.92941 * 90.00036 * 5 4 2 7 7 C 1.38330 * 120.29482 * 179.71915 * 6 5 4 8 8 C 1.37976 * 120.14534 * 0.30209 * 7 6 5 9 9 C 1.39552 * 119.85427 * 359.97282 * 8 7 6 10 10 C 1.47844 * 120.14804 * 179.97438 * 9 8 7 11 11 O 1.21556 * 120.00118 * 173.02080 * 10 9 8 12 12 N 1.34776 * 119.99740 * 353.02385 * 10 9 8 13 13 C 1.47019 * 125.65089 * 5.45575 * 12 10 9 14 14 C 1.54335 * 107.26570 * 178.84968 * 13 12 10 15 15 C 1.55150 * 103.02294 * 338.13747 * 14 13 12 16 16 H 1.09001 * 111.00702 * 277.23508 * 15 14 13 17 17 N 1.46495 * 111.00541 * 153.38132 * 15 14 13 18 18 C 1.36943 * 120.00354 * 161.35438 * 17 15 14 19 19 H 1.07991 * 119.99456 * 359.97438 * 18 17 15 20 20 C 1.38811 * 120.00017 * 180.02562 * 18 17 15 21 21 N 1.31614 * 119.99966 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99964 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47309 * 59.99309 * 22 20 18 24 24 H 1.48494 * 109.47304 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46715 * 299.99507 * 22 20 18 26 26 C 1.47429 * 125.64596 * 185.76262 * 12 10 9 27 27 C 1.37941 * 119.93041 * 270.27134 * 5 4 2 28 28 H 1.09000 * 109.47100 * 296.04732 * 1 2 3 29 29 H 1.08999 * 109.46724 * 56.04637 * 1 2 3 30 30 H 1.09003 * 109.47115 * 176.04526 * 1 2 3 31 31 H 1.09000 * 109.46812 * 183.95271 * 3 2 1 32 32 H 1.09003 * 109.47300 * 303.95265 * 3 2 1 33 33 H 1.09003 * 109.47084 * 63.95848 * 3 2 1 34 34 H 1.08997 * 109.47250 * 49.99638 * 4 2 1 35 35 H 1.09000 * 109.46565 * 289.99917 * 4 2 1 36 36 H 1.08001 * 119.84837 * 359.97438 * 6 5 4 37 37 H 1.07999 * 119.92962 * 180.27224 * 7 6 5 38 38 H 1.08001 * 120.07233 * 179.97438 * 8 7 6 39 39 H 1.08999 * 109.88374 * 298.39412 * 13 12 10 40 40 H 1.09005 * 109.87886 * 59.56145 * 13 12 10 41 41 H 1.09010 * 110.84856 * 219.67171 * 14 13 12 42 42 H 1.08995 * 110.51526 * 96.45622 * 14 13 12 43 43 H 0.97000 * 120.00178 * 341.35103 * 17 15 14 44 44 H 0.97003 * 119.99836 * 180.02562 * 21 20 18 45 45 H 1.08996 * 110.36844 * 322.92862 * 26 12 10 46 46 H 1.08994 * 110.36844 * 85.14537 * 26 12 10 47 47 H 1.07997 * 120.06932 * 0.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1376 5 6 3.4817 -0.9526 0.9728 6 6 4.3572 -0.0167 1.4950 7 6 5.7230 -0.1834 1.3532 8 6 6.2212 -1.2823 0.6837 9 6 5.3437 -2.2269 0.1496 10 6 5.8704 -3.4064 -0.5695 11 8 5.1145 -4.2905 -0.9225 12 7 7.1886 -3.5015 -0.8334 13 6 8.2251 -2.5680 -0.3688 14 6 9.5803 -3.0924 -0.8888 15 6 9.2973 -4.5957 -1.1480 16 1 9.3846 -5.1740 -0.2281 17 7 10.1854 -5.1260 -2.1854 18 6 10.3735 -6.4776 -2.3004 19 1 9.8675 -7.1524 -1.6261 20 6 11.2154 -6.9800 -3.2831 21 7 11.8325 -6.1574 -4.1045 22 14 11.4715 -8.8236 -3.4404 23 1 10.1690 -9.4829 -3.7125 24 1 12.4086 -9.0996 -4.5588 25 1 12.0401 -9.3541 -2.1753 26 6 7.8293 -4.5553 -1.6413 27 6 3.9665 -2.0530 0.2968 28 1 -0.3633 0.4513 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0828 1.3431 -0.0708 32 1 1.5899 1.9163 -0.8525 33 1 1.7045 1.8723 0.9234 34 1 1.5090 -1.7407 1.1756 35 1 1.7975 -0.2248 2.0627 36 1 3.9723 0.8455 2.0193 37 1 6.4010 0.5484 1.7670 38 1 7.2878 -1.4110 0.5733 39 1 8.0329 -1.5721 -0.7680 40 1 8.2349 -2.5375 0.7207 41 1 10.3584 -2.9708 -0.1351 42 1 9.8559 -2.5867 -1.8142 43 1 10.6401 -4.5198 -2.7908 44 1 12.4206 -6.5085 -4.7914 45 1 7.3438 -5.5153 -1.4663 46 1 7.7900 -4.2985 -2.6998 47 1 3.2821 -2.7801 -0.1145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019810838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:59 Heat of formation + Delta-G solvation = 17.294061 kcal Electronic energy + Delta-G solvation = -26028.939959 eV Core-core repulsion = 22405.062917 eV Total energy + Delta-G solvation = -3623.877042 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.63611 -40.03507 -38.69731 -37.83805 -36.04826 -33.71263 -32.66373 -32.09964 -31.16388 -29.36996 -28.47877 -27.56032 -26.33077 -24.96211 -23.76835 -23.19905 -21.97091 -21.72243 -20.70574 -19.33565 -18.11345 -17.55529 -17.23820 -16.91094 -16.46756 -16.32830 -16.30158 -15.87023 -15.53196 -15.36531 -15.19494 -14.85008 -14.74910 -14.35296 -14.03354 -13.87437 -13.67831 -13.41598 -13.23529 -13.15822 -12.95841 -12.85692 -12.81613 -12.50437 -12.43265 -12.41388 -12.24127 -12.09646 -11.85188 -11.70872 -11.39197 -11.08672 -10.93717 -10.00892 -9.82791 -9.66547 -9.26247 -9.08961 -7.98478 -5.28379 -0.12937 0.38864 1.46714 1.49374 1.55121 1.78051 1.88823 2.54373 2.76324 3.24853 3.30710 3.44491 3.56586 3.73328 3.91304 3.96574 4.03459 4.11765 4.19964 4.24650 4.31325 4.31452 4.39099 4.44425 4.54586 4.55412 4.58741 4.64644 4.72004 4.76321 4.81235 4.91565 4.96647 5.01718 5.04643 5.05470 5.16800 5.19600 5.34114 5.40374 5.42896 5.50909 5.54829 5.94119 6.05358 6.09855 6.23481 6.47550 7.03569 7.30953 8.02100 8.26671 9.23828 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027801 B = 0.002357 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.904793 B =11877.266097 C =12427.900343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.567 5.567 3 C 0.021 3.979 4 C 0.097 3.903 5 C -0.093 4.093 6 C -0.083 4.083 7 C -0.120 4.120 8 C -0.120 4.120 9 C -0.148 4.148 10 C 0.558 3.442 11 O -0.595 6.595 12 N -0.607 5.607 13 C 0.095 3.905 14 C -0.130 4.130 15 C 0.166 3.834 16 H 0.063 0.937 17 N -0.722 5.722 18 C -0.249 4.249 19 H 0.072 0.928 20 C -0.068 4.068 21 N -0.963 5.963 22 Si 0.970 3.030 23 H -0.284 1.284 24 H -0.293 1.293 25 H -0.275 1.275 26 C 0.091 3.909 27 C -0.061 4.061 28 H 0.037 0.963 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.151 0.849 37 H 0.166 0.834 38 H 0.178 0.822 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.077 0.923 43 H 0.379 0.621 44 H 0.253 0.747 45 H 0.042 0.958 46 H 0.048 0.952 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.867 21.276 15.809 31.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.291 5.291 3 C -0.127 4.127 4 C -0.030 4.030 5 C -0.093 4.093 6 C -0.101 4.101 7 C -0.137 4.137 8 C -0.138 4.138 9 C -0.151 4.151 10 C 0.350 3.650 11 O -0.478 6.478 12 N -0.339 5.339 13 C -0.026 4.026 14 C -0.168 4.168 15 C 0.055 3.945 16 H 0.081 0.919 17 N -0.361 5.361 18 C -0.381 4.381 19 H 0.090 0.910 20 C -0.261 4.261 21 N -0.613 5.613 22 Si 0.799 3.201 23 H -0.210 1.210 24 H -0.219 1.219 25 H -0.201 1.201 26 C -0.035 4.035 27 C -0.080 4.080 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.169 0.831 37 H 0.183 0.817 38 H 0.195 0.805 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.096 0.904 43 H 0.212 0.788 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.161 20.402 15.228 30.702 hybrid contribution -0.136 -1.116 -0.404 1.195 sum -17.296 19.286 14.823 29.847 Atomic orbital electron populations 1.22407 0.85951 1.02592 1.01309 1.61932 1.08930 1.15035 1.43190 1.22481 1.01142 0.87841 1.01213 1.21043 0.90302 0.99269 0.92435 1.19787 0.96171 0.94558 0.98804 1.21614 0.93439 0.97999 0.97083 1.21532 0.95809 0.97799 0.98608 1.23000 1.02814 0.92892 0.95077 1.19761 0.95062 0.96046 1.04201 1.18690 0.80585 0.86617 0.79081 1.90722 1.57815 1.42930 1.56334 1.48421 1.05935 1.28366 1.51183 1.22821 0.85702 0.93398 1.00722 1.22939 0.96920 0.93854 1.03111 1.21464 0.86747 0.94853 0.91428 0.91904 1.42406 1.52296 1.04100 1.37330 1.19541 1.21512 0.84731 1.12319 0.90979 1.25517 1.00242 1.01870 0.98459 1.69782 1.34582 1.34879 1.22067 0.85275 0.77241 0.80419 0.77204 1.21033 1.21899 1.20074 1.23038 0.96228 0.89906 0.94343 1.21041 0.93611 0.97443 0.95932 0.94462 0.90740 0.91498 0.91413 0.91145 0.94177 0.90315 0.91826 0.83107 0.81682 0.80513 0.87834 0.87379 0.87316 0.90420 0.78763 0.93823 0.93903 0.93393 0.87318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.57 127.69 1.22 1.53 16 2 N -0.57 -9.16 5.01 -953.46 -4.78 -13.94 16 3 C 0.02 0.26 9.13 127.69 1.17 1.43 16 4 C 0.10 1.49 5.11 85.56 0.44 1.93 16 5 C -0.09 -1.73 4.88 -19.90 -0.10 -1.83 16 6 C -0.08 -1.11 7.96 22.33 0.18 -0.93 16 7 C -0.12 -1.54 10.03 22.23 0.22 -1.32 16 8 C -0.12 -2.20 8.61 22.52 0.19 -2.01 16 9 C -0.15 -3.99 5.87 -20.09 -0.12 -4.11 16 10 C 0.56 19.89 7.81 86.79 0.68 20.57 16 11 O -0.60 -26.69 16.60 -3.89 -0.06 -26.76 16 12 N -0.61 -19.80 3.33 -828.13 -2.75 -22.55 16 13 C 0.09 2.07 4.87 86.73 0.42 2.49 16 14 C -0.13 -3.43 6.57 31.78 0.21 -3.22 16 15 C 0.17 6.32 3.69 46.38 0.17 6.49 16 16 H 0.06 2.43 8.13 -2.39 -0.02 2.41 16 17 N -0.72 -35.35 5.28 -316.39 -1.67 -37.02 16 18 C -0.25 -13.77 9.98 84.03 0.84 -12.93 16 19 H 0.07 3.90 7.83 -2.92 -0.02 3.87 16 20 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 21 N -0.96 -58.00 13.06 21.65 0.28 -57.72 16 22 Si 0.97 46.34 29.55 68.60 2.03 48.37 16 23 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 24 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 25 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 26 C 0.09 3.64 6.63 86.86 0.58 4.21 16 27 C -0.06 -1.58 9.24 22.53 0.21 -1.37 16 28 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.07 0.83 8.12 -2.39 -0.02 0.81 16 30 H 0.07 0.85 8.12 -2.39 -0.02 0.83 16 31 H 0.07 0.91 6.16 -2.39 -0.01 0.89 16 32 H 0.07 0.82 8.12 -2.39 -0.02 0.80 16 33 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.08 1.29 8.01 -2.39 -0.02 1.27 16 35 H 0.06 0.73 8.06 -2.39 -0.02 0.71 16 36 H 0.15 1.12 8.03 -2.91 -0.02 1.10 16 37 H 0.17 0.94 8.06 -2.91 -0.02 0.91 16 38 H 0.18 2.53 2.75 -7.90 -0.02 2.51 16 39 H 0.10 1.75 6.75 -2.39 -0.02 1.74 16 40 H 0.11 1.73 6.73 -2.38 -0.02 1.72 16 41 H 0.11 2.35 8.14 -2.38 -0.02 2.33 16 42 H 0.08 2.12 8.00 -2.39 -0.02 2.10 16 43 H 0.38 19.56 7.71 -92.71 -0.71 18.84 16 44 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 45 H 0.04 1.93 7.98 -2.39 -0.02 1.91 16 46 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.11 3.28 7.67 -2.91 -0.02 3.26 16 Total: -1.00 -75.18 376.71 0.06 -75.12 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 0.24 Total: 26.97 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 6.78 Total: 7.53 kcal Atomic # 7 Polarization: -122.31 SS G_CDS: -8.92 Total: -131.23 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.06 Total: -26.76 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -75.18 0.06 -75.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019810838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.411 kcal (2) G-P(sol) polarization free energy of solvation -75.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds