Wall clock time and date at job start Tue Mar 31 2020 11:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46904 * 111.00063 * 2 1 4 4 C 1.46902 * 110.99758 * 123.94894 * 2 1 3 5 5 C 1.50695 * 109.47465 * 66.04858 * 4 2 1 6 6 C 1.37984 * 120.07634 * 260.21840 * 5 4 2 7 7 C 1.38335 * 120.14418 * 180.23126 * 6 5 4 8 8 C 1.38373 * 120.29579 * 359.77941 * 7 6 5 9 9 C 1.37936 * 120.14741 * 0.02562 * 8 7 6 10 10 C 1.39560 * 120.07522 * 79.99782 * 5 4 2 11 11 C 1.47846 * 120.14320 * 0.02562 * 10 5 4 12 12 O 1.21551 * 120.00201 * 320.94491 * 11 10 5 13 13 N 1.34773 * 119.99964 * 140.93606 * 11 10 5 14 14 C 1.47430 * 125.64725 * 354.78798 * 13 11 10 15 15 C 1.54908 * 104.83181 * 204.09028 * 14 13 11 16 16 C 1.55408 * 101.66724 * 323.07576 * 15 14 13 17 17 H 1.08996 * 110.69359 * 277.04699 * 16 15 14 18 18 N 1.46500 * 110.85250 * 153.69820 * 16 15 14 19 19 C 1.36933 * 120.00013 * 160.08669 * 18 16 15 20 20 H 1.07997 * 119.99774 * 0.02562 * 19 18 16 21 21 C 1.38811 * 120.00122 * 179.97438 * 19 18 16 22 22 N 1.31627 * 120.00150 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00063 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47363 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47127 * 120.00647 * 23 21 19 26 26 H 1.48509 * 109.47142 * 240.00296 * 23 21 19 27 27 C 1.47026 * 125.64984 * 174.74783 * 13 11 10 28 28 H 1.08990 * 109.47634 * 296.05033 * 1 2 3 29 29 H 1.09008 * 109.46889 * 56.05418 * 1 2 3 30 30 H 1.09003 * 109.47064 * 176.04738 * 1 2 3 31 31 H 1.09000 * 109.47179 * 183.95003 * 3 2 1 32 32 H 1.09002 * 109.46498 * 303.94866 * 3 2 1 33 33 H 1.08992 * 109.47327 * 63.94682 * 3 2 1 34 34 H 1.09006 * 109.47165 * 306.04585 * 4 2 1 35 35 H 1.09008 * 109.47383 * 186.04986 * 4 2 1 36 36 H 1.07998 * 119.92068 * 359.97438 * 6 5 4 37 37 H 1.08004 * 119.84962 * 179.76395 * 7 6 5 38 38 H 1.07998 * 119.93070 * 179.97438 * 8 7 6 39 39 H 1.07993 * 120.07859 * 179.97438 * 9 8 7 40 40 H 1.08998 * 110.36533 * 322.92981 * 14 13 11 41 41 H 1.09005 * 110.36350 * 85.14277 * 14 13 11 42 42 H 1.08999 * 111.00547 * 81.06486 * 15 14 13 43 43 H 1.08997 * 111.00139 * 204.92014 * 15 14 13 44 44 H 0.97007 * 120.00070 * 340.08898 * 18 16 15 45 45 H 0.96998 * 120.00020 * 180.02562 * 22 21 19 46 46 H 1.09004 * 109.87833 * 298.39600 * 27 13 11 47 47 H 1.08996 * 109.88002 * 59.40392 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9953 -0.7659 1.1377 5 6 1.6369 -2.2203 0.9731 6 6 0.5626 -2.7496 1.6585 7 6 0.2352 -4.0857 1.5122 8 6 0.9787 -4.8989 0.6752 9 6 2.0526 -4.3816 -0.0189 10 6 2.3879 -3.0339 0.1236 11 6 3.5377 -2.4726 -0.6172 12 8 3.4695 -1.3543 -1.0887 13 7 4.6615 -3.2008 -0.7697 14 6 4.9204 -4.5188 -0.1619 15 6 6.4642 -4.6322 -0.1036 16 6 6.8808 -3.9360 -1.4290 17 1 6.8165 -4.6312 -2.2660 18 7 8.2298 -3.3749 -1.3217 19 6 8.9444 -3.0887 -2.4542 20 1 8.5133 -3.2763 -3.4265 21 6 10.2224 -2.5566 -2.3526 22 7 10.7476 -2.3275 -1.1676 23 14 11.1975 -2.1669 -3.8975 24 1 10.3891 -2.5142 -5.0939 25 1 11.5240 -0.7185 -3.9246 26 1 12.4544 -2.9578 -3.9023 27 6 5.8320 -2.8127 -1.5703 28 1 -0.3634 0.4513 0.9231 29 1 -0.3633 0.5739 -0.8526 30 1 -0.3633 -1.0253 -0.0708 31 1 3.0827 1.3433 -0.0708 32 1 1.5898 1.9162 -0.8525 33 1 1.7043 1.8724 0.9232 34 1 1.5610 -0.3871 2.0629 35 1 3.0797 -0.6610 1.1758 36 1 -0.0213 -2.1203 2.3138 37 1 -0.6043 -4.4959 2.0538 38 1 0.7182 -5.9413 0.5656 39 1 2.6324 -5.0174 -0.6715 40 1 4.4985 -4.5629 0.8422 41 1 4.5032 -5.3115 -0.7831 42 1 6.8630 -4.0974 0.7584 43 1 6.7791 -5.6757 -0.0940 44 1 8.6169 -3.2061 -0.4484 45 1 11.6406 -1.9553 -1.0966 46 1 5.5455 -2.7024 -2.6163 47 1 6.2415 -1.8740 -1.1973 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019820503.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:03 Heat of formation + Delta-G solvation = 27.523754 kcal Electronic energy + Delta-G solvation = -26992.242572 eV Core-core repulsion = 23368.809123 eV Total energy + Delta-G solvation = -3623.433449 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.42918 -38.72151 -37.10179 -36.85233 -34.09958 -31.91447 -31.85661 -30.89645 -29.53371 -27.63376 -27.49581 -26.80053 -24.55389 -23.34847 -22.60402 -22.17188 -21.19135 -20.00219 -19.15608 -17.44014 -16.94756 -16.30354 -16.04555 -15.89798 -15.44556 -15.20845 -14.71245 -14.55184 -14.36895 -14.12690 -13.60300 -13.41253 -13.21261 -12.97659 -12.79598 -12.55342 -12.46326 -12.36444 -12.17190 -11.86353 -11.75206 -11.61087 -11.55329 -11.34679 -11.11673 -11.04256 -10.82144 -10.71702 -10.29019 -10.01195 -9.75800 -9.46137 -9.05046 -8.98110 -8.93708 -8.18744 -8.17472 -7.06214 -5.82085 -3.12601 0.90576 1.16422 3.02003 3.29538 3.42372 3.48621 3.50402 3.65802 4.16758 4.54094 4.57309 4.62310 4.69211 4.81968 4.99346 5.03088 5.15005 5.24754 5.26755 5.29525 5.32183 5.41200 5.43873 5.54690 5.59088 5.63607 5.68944 5.76997 5.80023 5.81680 5.86251 5.97464 6.02241 6.13173 6.17085 6.25895 6.33329 6.36005 6.41553 6.58484 6.70614 6.81630 6.92992 7.05523 7.10671 7.67752 7.90210 8.35471 8.55856 9.47585 10.01405 10.36070 11.40112 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017107 B = 0.003236 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.396761 B = 8651.231248 C = 9801.688281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.516 5.516 3 C 0.034 3.966 4 C 0.098 3.902 5 C -0.034 4.034 6 C -0.122 4.122 7 C -0.105 4.105 8 C -0.126 4.126 9 C -0.092 4.092 10 C -0.096 4.096 11 C 0.557 3.443 12 O -0.501 6.501 13 N -0.612 5.612 14 C 0.103 3.897 15 C -0.141 4.141 16 C 0.172 3.828 17 H 0.065 0.935 18 N -0.713 5.713 19 C -0.246 4.246 20 H 0.073 0.927 21 C -0.010 4.010 22 N -0.930 5.930 23 Si 0.908 3.092 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.086 3.914 28 H 0.018 0.982 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.016 0.984 34 H 0.036 0.964 35 H 0.086 0.914 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.131 0.869 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.387 0.613 45 H 0.256 0.744 46 H 0.056 0.944 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.889 -3.631 7.766 24.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.239 5.239 3 C -0.114 4.114 4 C -0.029 4.029 5 C -0.035 4.035 6 C -0.141 4.141 7 C -0.123 4.123 8 C -0.144 4.144 9 C -0.111 4.111 10 C -0.100 4.100 11 C 0.344 3.656 12 O -0.376 6.376 13 N -0.348 5.348 14 C -0.021 4.021 15 C -0.180 4.180 16 C 0.060 3.940 17 H 0.083 0.917 18 N -0.353 5.353 19 C -0.377 4.377 20 H 0.091 0.909 21 C -0.206 4.206 22 N -0.578 5.578 23 Si 0.739 3.261 24 H -0.204 1.204 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.039 4.039 28 H 0.037 0.963 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.035 0.965 34 H 0.055 0.945 35 H 0.104 0.896 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.221 0.779 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -22.705 -3.139 6.887 23.933 hybrid contribution 0.362 0.629 0.219 0.758 sum -22.343 -2.510 7.106 23.580 Atomic orbital electron populations 1.22441 0.88255 1.02049 0.99821 1.61833 1.06568 1.13505 1.41948 1.22296 1.01576 0.88066 0.99480 1.20987 1.01213 0.89366 0.91348 1.19771 0.93960 0.95064 0.94707 1.20981 0.96956 0.95642 1.00507 1.21229 0.99350 0.93660 0.98099 1.21084 0.95797 1.00051 0.97512 1.21479 0.97100 0.93905 0.98598 1.19876 0.97402 0.93827 0.98892 1.17978 0.81519 0.85054 0.81060 1.90875 1.81151 1.17457 1.48125 1.48518 1.16318 1.20033 1.49882 1.22379 0.96936 0.85098 0.97671 1.23103 0.93102 1.01738 1.00025 1.21248 0.85675 0.92047 0.95049 0.91749 1.42370 1.10952 1.75080 1.06928 1.19303 0.96311 1.35324 0.86759 0.90885 1.24768 0.97545 1.01581 0.96710 1.69674 1.16625 1.50056 1.21443 0.86108 0.79964 0.77713 0.82335 1.20423 1.21778 1.21809 1.23168 0.85010 1.01499 0.94226 0.96334 0.91633 0.91531 0.90869 0.91556 0.96514 0.94548 0.89612 0.85960 0.85873 0.85626 0.85151 0.91167 0.91733 0.90580 0.90097 0.77891 0.93436 0.92563 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.27 60.06 0.56 0.80 16 2 N -0.52 -6.96 3.59 -252.72 -0.91 -7.87 16 3 C 0.03 0.42 9.57 60.07 0.57 0.99 16 4 C 0.10 1.27 4.14 -4.98 -0.02 1.24 16 5 C -0.03 -0.42 4.61 -104.22 -0.48 -0.90 16 6 C -0.12 -1.19 8.70 -39.64 -0.35 -1.53 16 7 C -0.11 -0.89 10.04 -39.50 -0.40 -1.29 16 8 C -0.13 -1.13 10.03 -39.64 -0.40 -1.52 16 9 C -0.09 -1.02 8.23 -39.18 -0.32 -1.34 16 10 C -0.10 -1.31 5.35 -104.96 -0.56 -1.87 16 11 C 0.56 9.37 6.87 -12.33 -0.08 9.28 16 12 O -0.50 -9.97 14.41 5.32 0.08 -9.89 16 13 N -0.61 -9.96 3.33 -171.62 -0.57 -10.53 16 14 C 0.10 1.33 5.26 -2.53 -0.01 1.32 16 15 C -0.14 -2.11 6.71 -24.45 -0.16 -2.28 16 16 C 0.17 3.28 3.60 -65.96 -0.24 3.04 16 17 H 0.06 1.22 8.12 -51.93 -0.42 0.79 16 18 N -0.71 -17.36 5.18 -51.52 -0.27 -17.62 16 19 C -0.25 -6.69 9.98 -15.06 -0.15 -6.84 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 21 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 22 N -0.93 -27.71 13.06 55.49 0.72 -26.98 16 23 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 C 0.09 1.65 6.62 -3.06 -0.02 1.63 16 28 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.06 0.67 8.12 -51.92 -0.42 0.25 16 30 H 0.07 0.73 6.64 -51.93 -0.34 0.38 16 31 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 32 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 33 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 34 H 0.04 0.40 7.99 -51.93 -0.41 -0.01 16 35 H 0.09 1.28 7.05 -51.92 -0.37 0.91 16 36 H 0.12 0.95 8.04 -52.49 -0.42 0.53 16 37 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 38 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.13 1.32 5.99 -52.49 -0.31 1.00 16 40 H 0.07 0.81 7.35 -51.93 -0.38 0.43 16 41 H 0.06 0.71 6.97 -51.93 -0.36 0.34 16 42 H 0.08 1.21 8.01 -51.93 -0.42 0.80 16 43 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.39 10.00 7.72 -40.82 -0.32 9.69 16 45 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.07 1.59 8.03 -51.93 -0.42 1.18 16 LS Contribution 376.00 15.07 5.67 5.67 Total: -1.00 -32.12 376.00 -9.98 -42.10 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -7.52 Total: 7.56 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -2.16 Total: 0.36 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: -1.02 Total: -63.00 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.08 Total: -9.89 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.12 -9.98 -42.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019820503.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.622 kcal (2) G-P(sol) polarization free energy of solvation -32.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds