Wall clock time and date at job start Tue Mar 31 2020 11:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46904 * 111.00063 * 2 1 4 4 C 1.46902 * 110.99758 * 123.94894 * 2 1 3 5 5 C 1.50695 * 109.47465 * 66.04858 * 4 2 1 6 6 C 1.37984 * 120.07634 * 260.21840 * 5 4 2 7 7 C 1.38335 * 120.14418 * 180.23126 * 6 5 4 8 8 C 1.38373 * 120.29579 * 359.77941 * 7 6 5 9 9 C 1.37936 * 120.14741 * 0.02562 * 8 7 6 10 10 C 1.39560 * 120.07522 * 79.99782 * 5 4 2 11 11 C 1.47846 * 120.14320 * 0.02562 * 10 5 4 12 12 O 1.21551 * 120.00201 * 320.94491 * 11 10 5 13 13 N 1.34773 * 119.99964 * 140.93606 * 11 10 5 14 14 C 1.47430 * 125.64725 * 354.78798 * 13 11 10 15 15 C 1.54908 * 104.83181 * 204.09028 * 14 13 11 16 16 C 1.55408 * 101.66724 * 323.07576 * 15 14 13 17 17 H 1.08996 * 110.69359 * 277.04699 * 16 15 14 18 18 N 1.46500 * 110.85250 * 153.69820 * 16 15 14 19 19 C 1.36933 * 120.00013 * 160.08669 * 18 16 15 20 20 H 1.07997 * 119.99774 * 0.02562 * 19 18 16 21 21 C 1.38811 * 120.00122 * 179.97438 * 19 18 16 22 22 N 1.31627 * 120.00150 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00063 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47363 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47127 * 120.00647 * 23 21 19 26 26 H 1.48509 * 109.47142 * 240.00296 * 23 21 19 27 27 C 1.47026 * 125.64984 * 174.74783 * 13 11 10 28 28 H 1.08990 * 109.47634 * 296.05033 * 1 2 3 29 29 H 1.09008 * 109.46889 * 56.05418 * 1 2 3 30 30 H 1.09003 * 109.47064 * 176.04738 * 1 2 3 31 31 H 1.09000 * 109.47179 * 183.95003 * 3 2 1 32 32 H 1.09002 * 109.46498 * 303.94866 * 3 2 1 33 33 H 1.08992 * 109.47327 * 63.94682 * 3 2 1 34 34 H 1.09006 * 109.47165 * 306.04585 * 4 2 1 35 35 H 1.09008 * 109.47383 * 186.04986 * 4 2 1 36 36 H 1.07998 * 119.92068 * 359.97438 * 6 5 4 37 37 H 1.08004 * 119.84962 * 179.76395 * 7 6 5 38 38 H 1.07998 * 119.93070 * 179.97438 * 8 7 6 39 39 H 1.07993 * 120.07859 * 179.97438 * 9 8 7 40 40 H 1.08998 * 110.36533 * 322.92981 * 14 13 11 41 41 H 1.09005 * 110.36350 * 85.14277 * 14 13 11 42 42 H 1.08999 * 111.00547 * 81.06486 * 15 14 13 43 43 H 1.08997 * 111.00139 * 204.92014 * 15 14 13 44 44 H 0.97007 * 120.00070 * 340.08898 * 18 16 15 45 45 H 0.96998 * 120.00020 * 180.02562 * 22 21 19 46 46 H 1.09004 * 109.87833 * 298.39600 * 27 13 11 47 47 H 1.08996 * 109.88002 * 59.40392 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9953 -0.7659 1.1377 5 6 1.6369 -2.2203 0.9731 6 6 0.5626 -2.7496 1.6585 7 6 0.2352 -4.0857 1.5122 8 6 0.9787 -4.8989 0.6752 9 6 2.0526 -4.3816 -0.0189 10 6 2.3879 -3.0339 0.1236 11 6 3.5377 -2.4726 -0.6172 12 8 3.4695 -1.3543 -1.0887 13 7 4.6615 -3.2008 -0.7697 14 6 4.9204 -4.5188 -0.1619 15 6 6.4642 -4.6322 -0.1036 16 6 6.8808 -3.9360 -1.4290 17 1 6.8165 -4.6312 -2.2660 18 7 8.2298 -3.3749 -1.3217 19 6 8.9444 -3.0887 -2.4542 20 1 8.5133 -3.2763 -3.4265 21 6 10.2224 -2.5566 -2.3526 22 7 10.7476 -2.3275 -1.1676 23 14 11.1975 -2.1669 -3.8975 24 1 10.3891 -2.5142 -5.0939 25 1 11.5240 -0.7185 -3.9246 26 1 12.4544 -2.9578 -3.9023 27 6 5.8320 -2.8127 -1.5703 28 1 -0.3634 0.4513 0.9231 29 1 -0.3633 0.5739 -0.8526 30 1 -0.3633 -1.0253 -0.0708 31 1 3.0827 1.3433 -0.0708 32 1 1.5898 1.9162 -0.8525 33 1 1.7043 1.8724 0.9232 34 1 1.5610 -0.3871 2.0629 35 1 3.0797 -0.6610 1.1758 36 1 -0.0213 -2.1203 2.3138 37 1 -0.6043 -4.4959 2.0538 38 1 0.7182 -5.9413 0.5656 39 1 2.6324 -5.0174 -0.6715 40 1 4.4985 -4.5629 0.8422 41 1 4.5032 -5.3115 -0.7831 42 1 6.8630 -4.0974 0.7584 43 1 6.7791 -5.6757 -0.0940 44 1 8.6169 -3.2061 -0.4484 45 1 11.6406 -1.9553 -1.0966 46 1 5.5455 -2.7024 -2.6163 47 1 6.2415 -1.8740 -1.1973 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019820503.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:03 Heat of formation + Delta-G solvation = 6.818872 kcal Electronic energy + Delta-G solvation = -26993.140403 eV Core-core repulsion = 23368.809123 eV Total energy + Delta-G solvation = -3624.331280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.50774 -39.85145 -38.35216 -37.90304 -35.90970 -33.47194 -32.70038 -32.10463 -30.99601 -29.05655 -28.45826 -27.80146 -26.11680 -24.81044 -23.53933 -23.25686 -22.23986 -21.41562 -20.32814 -19.27390 -18.26015 -17.46053 -17.18777 -16.83558 -16.57030 -16.37919 -16.23101 -15.60521 -15.43677 -15.27104 -15.16540 -14.90989 -14.59894 -14.22285 -13.77671 -13.69899 -13.51193 -13.38617 -13.28300 -13.16619 -12.95369 -12.90967 -12.66268 -12.56800 -12.54156 -12.44134 -12.24298 -12.08125 -11.87285 -11.74047 -11.59193 -11.04651 -10.71926 -9.84490 -9.78385 -9.52115 -9.10895 -9.09922 -7.97890 -5.27933 0.05144 0.41111 1.46413 1.47963 1.57465 1.87651 2.05738 2.54711 2.76936 3.26498 3.33302 3.54440 3.68779 3.76530 3.85628 3.91595 4.11415 4.15568 4.24482 4.30157 4.35241 4.36194 4.38412 4.49457 4.50903 4.57847 4.60868 4.69438 4.71019 4.73351 4.90380 4.91196 4.98045 4.98460 5.01550 5.08955 5.17855 5.29915 5.40212 5.44501 5.51092 5.54981 5.57771 5.99480 6.11593 6.21279 6.24076 6.63616 7.27102 7.30777 8.02915 8.26211 9.25358 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017107 B = 0.003236 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.396761 B = 8651.231248 C = 9801.688281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.544 5.544 3 C 0.039 3.961 4 C 0.103 3.897 5 C -0.049 4.049 6 C -0.121 4.121 7 C -0.093 4.093 8 C -0.119 4.119 9 C -0.095 4.095 10 C -0.123 4.123 11 C 0.551 3.449 12 O -0.546 6.546 13 N -0.614 5.614 14 C 0.109 3.891 15 C -0.130 4.130 16 C 0.166 3.834 17 H 0.073 0.927 18 N -0.726 5.726 19 C -0.245 4.245 20 H 0.078 0.922 21 C -0.072 4.072 22 N -0.967 5.967 23 Si 0.971 3.029 24 H -0.266 1.266 25 H -0.297 1.297 26 H -0.289 1.289 27 C 0.100 3.900 28 H 0.036 0.964 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.034 0.966 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.144 0.856 37 H 0.159 0.841 38 H 0.159 0.841 39 H 0.139 0.861 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.062 0.938 43 H 0.107 0.893 44 H 0.376 0.624 45 H 0.252 0.748 46 H 0.043 0.957 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.022 -6.191 8.523 28.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.267 5.267 3 C -0.110 4.110 4 C -0.025 4.025 5 C -0.051 4.051 6 C -0.139 4.139 7 C -0.111 4.111 8 C -0.137 4.137 9 C -0.113 4.113 10 C -0.126 4.126 11 C 0.340 3.660 12 O -0.423 6.423 13 N -0.349 5.349 14 C -0.013 4.013 15 C -0.168 4.168 16 C 0.056 3.944 17 H 0.091 0.909 18 N -0.365 5.365 19 C -0.376 4.376 20 H 0.095 0.905 21 C -0.264 4.264 22 N -0.618 5.618 23 Si 0.800 3.200 24 H -0.190 1.190 25 H -0.224 1.224 26 H -0.216 1.216 27 C -0.027 4.027 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.161 0.839 37 H 0.177 0.823 38 H 0.176 0.824 39 H 0.156 0.844 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.081 0.919 43 H 0.126 0.874 44 H 0.208 0.792 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -25.892 -5.747 7.642 27.601 hybrid contribution 1.194 1.403 0.021 1.843 sum -24.698 -4.344 7.663 26.222 Atomic orbital electron populations 1.22414 0.86505 1.02284 1.00803 1.61780 1.08297 1.13781 1.42866 1.22203 0.99781 0.88350 1.00618 1.20880 0.99165 0.90470 0.91956 1.19840 0.95157 0.94424 0.95635 1.21222 0.95933 0.96731 1.00016 1.21684 0.99539 0.92827 0.97035 1.21471 0.94412 1.01640 0.96212 1.21611 0.98090 0.92623 0.99024 1.19687 0.97028 0.95448 1.00485 1.18683 0.82240 0.84522 0.80513 1.90840 1.82097 1.19471 1.49940 1.48564 1.15336 1.21371 1.49633 1.22578 0.95344 0.84012 0.99350 1.23050 0.94558 1.02437 0.96760 1.21455 0.83087 0.91928 0.97940 0.90876 1.42528 1.12788 1.75500 1.05657 1.19673 0.96412 1.33750 0.87785 0.90453 1.25555 0.98895 1.02551 0.99446 1.69818 1.16774 1.51779 1.23388 0.85110 0.78552 0.76819 0.79504 1.19003 1.22447 1.21642 1.22697 0.86441 0.99750 0.93764 0.94568 0.91422 0.91497 0.93774 0.91015 0.94709 0.92754 0.93175 0.83872 0.82346 0.82371 0.84354 0.89039 0.88494 0.91896 0.87443 0.79204 0.93957 0.93891 0.95225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.27 127.69 1.18 1.75 16 2 N -0.54 -14.96 3.59 -953.47 -3.43 -18.39 16 3 C 0.04 1.00 9.57 127.69 1.22 2.22 16 4 C 0.10 2.69 4.14 85.56 0.35 3.04 16 5 C -0.05 -1.16 4.61 -19.61 -0.09 -1.25 16 6 C -0.12 -1.93 8.70 22.23 0.19 -1.74 16 7 C -0.09 -1.11 10.04 22.33 0.22 -0.89 16 8 C -0.12 -1.55 10.03 22.23 0.22 -1.33 16 9 C -0.10 -1.81 8.23 22.53 0.19 -1.63 16 10 C -0.12 -3.24 5.35 -20.09 -0.11 -3.34 16 11 C 0.55 19.13 6.87 86.79 0.60 19.73 16 12 O -0.55 -23.21 14.41 -3.88 -0.06 -23.27 16 13 N -0.61 -20.28 3.33 -815.17 -2.71 -22.99 16 14 C 0.11 2.60 5.26 86.85 0.46 3.06 16 15 C -0.13 -3.73 6.71 32.07 0.22 -3.51 16 16 C 0.17 6.40 3.60 46.27 0.17 6.57 16 17 H 0.07 2.71 8.12 -2.39 -0.02 2.69 16 18 N -0.73 -36.37 5.18 -316.92 -1.64 -38.01 16 19 C -0.24 -13.57 9.98 84.03 0.84 -12.73 16 20 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 21 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 22 N -0.97 -59.39 13.06 21.65 0.28 -59.11 16 23 Si 0.97 46.58 29.55 68.60 2.03 48.61 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 26 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 27 C 0.10 4.02 6.62 86.73 0.57 4.59 16 28 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 1.32 8.12 -2.38 -0.02 1.30 16 30 H 0.07 1.34 6.64 -2.39 -0.02 1.33 16 31 H 0.04 1.36 8.12 -2.39 -0.02 1.34 16 32 H 0.07 1.71 8.12 -2.39 -0.02 1.69 16 33 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.05 1.16 7.99 -2.38 -0.02 1.14 16 35 H 0.05 1.63 7.05 -2.38 -0.02 1.61 16 36 H 0.14 1.65 8.04 -2.91 -0.02 1.63 16 37 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 38 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 39 H 0.14 2.31 5.99 -2.91 -0.02 2.30 16 40 H 0.09 1.86 7.35 -2.39 -0.02 1.85 16 41 H 0.10 1.75 6.97 -2.38 -0.02 1.74 16 42 H 0.06 1.99 8.01 -2.39 -0.02 1.98 16 43 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.38 20.22 7.72 -92.70 -0.72 19.50 16 45 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 46 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 47 H 0.03 1.42 8.03 -2.39 -0.02 1.40 16 Total: -1.00 -74.46 376.00 1.42 -73.03 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 0.24 Total: 29.26 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 6.70 Total: 10.86 kcal Atomic # 7 Polarization: -131.00 SS G_CDS: -7.49 Total: -138.50 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.06 Total: -23.27 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -74.46 1.42 -73.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019820503.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.852 kcal (2) G-P(sol) polarization free energy of solvation -74.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds