Wall clock time and date at job start Tue Mar 31 2020 11:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 111.00071 * 2 1 4 4 C 1.46897 * 111.00167 * 123.95743 * 2 1 3 5 5 H 1.08998 * 109.47212 * 299.99433 * 4 2 1 6 6 C 1.50708 * 109.46871 * 179.97438 * 4 2 1 7 7 O 1.21274 * 120.00422 * 340.00358 * 6 4 2 8 8 N 1.34782 * 119.99430 * 160.00127 * 6 4 2 9 9 C 1.47016 * 125.65387 * 359.97438 * 8 6 4 10 10 C 1.54319 * 107.27339 * 178.96386 * 9 8 6 11 11 C 1.55155 * 102.94326 * 337.80552 * 10 9 8 12 12 H 1.09006 * 111.00618 * 277.39604 * 11 10 9 13 13 N 1.46499 * 111.00563 * 153.57676 * 11 10 9 14 14 C 1.36939 * 119.99933 * 86.73069 * 13 11 10 15 15 H 1.08001 * 119.99700 * 359.72658 * 14 13 11 16 16 C 1.38810 * 120.00095 * 179.71972 * 14 13 11 17 17 N 1.31624 * 119.99740 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00044 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47201 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47080 * 120.00466 * 18 16 14 21 21 H 1.48506 * 109.47018 * 240.00565 * 18 16 14 22 22 C 1.47421 * 125.64301 * 179.97438 * 8 6 4 23 23 C 1.50701 * 109.47324 * 60.00227 * 4 2 1 24 24 C 1.38234 * 119.99838 * 39.72277 * 23 4 2 25 25 C 1.38239 * 120.00096 * 179.79301 * 24 23 4 26 26 C 1.38237 * 119.99292 * 0.44046 * 25 24 23 27 27 C 1.38235 * 120.00437 * 359.81324 * 26 25 24 28 28 C 1.38227 * 120.00084 * 220.00143 * 23 4 2 29 29 H 1.09004 * 109.47028 * 299.99629 * 1 2 3 30 30 H 1.09002 * 109.47231 * 59.99575 * 1 2 3 31 31 H 1.09000 * 109.46689 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47046 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47357 * 300.00884 * 3 2 1 34 34 H 1.09002 * 109.46692 * 60.00141 * 3 2 1 35 35 H 1.09002 * 109.87935 * 59.54008 * 9 8 6 36 36 H 1.09006 * 110.01022 * 298.45594 * 9 8 6 37 37 H 1.09000 * 110.71845 * 219.44538 * 10 9 8 38 38 H 1.09001 * 110.87435 * 96.24233 * 10 9 8 39 39 H 0.97001 * 119.99790 * 266.45042 * 13 11 10 40 40 H 0.96998 * 119.99409 * 179.97438 * 17 16 14 41 41 H 1.09009 * 110.36539 * 85.26829 * 22 8 6 42 42 H 1.08997 * 110.36976 * 322.94758 * 22 8 6 43 43 H 1.07999 * 120.00130 * 0.02562 * 24 23 4 44 44 H 1.07997 * 120.00213 * 180.27817 * 25 24 23 45 45 H 1.08000 * 119.99555 * 179.83606 * 26 25 24 46 46 H 1.07999 * 119.99834 * 179.97438 * 27 26 25 47 47 H 1.08007 * 119.99875 * 359.97438 * 28 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.6461 -0.3201 2.0687 6 6 3.5020 -0.7440 1.1037 7 8 4.0817 -0.4822 0.0712 8 7 4.2051 -1.0154 2.2212 9 6 3.6329 -1.3464 3.5344 10 6 4.8120 -1.6025 4.4965 11 6 5.9760 -1.9557 3.5334 12 1 5.9354 -3.0047 3.2395 13 7 7.2719 -1.6316 4.1347 14 6 7.9019 -2.5448 4.9374 15 1 7.4413 -3.5024 5.1307 16 6 9.1326 -2.2400 5.5026 17 7 9.6937 -1.0728 5.2673 18 14 9.9915 -3.4855 6.5981 19 1 9.1579 -4.7098 6.7038 20 1 11.3104 -3.8342 6.0114 21 1 10.1894 -2.9027 7.9496 22 6 5.6753 -1.0295 2.3289 23 6 1.5123 -2.1908 1.0504 24 6 1.4550 -2.8274 -0.1753 25 6 1.0159 -4.1358 -0.2548 26 6 0.6256 -4.8045 0.8904 27 6 0.6780 -4.1662 2.1155 28 6 1.1212 -2.8592 2.1953 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.0851 1.3423 0.0005 33 1 1.6459 1.8949 -0.8899 34 1 1.6459 1.8947 0.8900 35 1 3.0174 -2.2425 3.4553 36 1 3.0307 -0.5143 3.8993 37 1 4.5933 -2.4390 5.1602 38 1 5.0457 -0.7065 5.0716 39 1 7.6856 -0.7716 3.9610 40 1 10.5535 -0.8597 5.6625 41 1 6.0512 -0.0243 2.5204 42 1 6.1185 -1.4341 1.4191 43 1 1.7567 -2.3039 -1.0704 44 1 0.9753 -4.6347 -1.2118 45 1 0.2800 -5.8258 0.8281 46 1 0.3727 -4.6885 3.0100 47 1 1.1622 -2.3605 3.1525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019825674.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:44 Heat of formation + Delta-G solvation = 28.555917 kcal Electronic energy + Delta-G solvation = -27229.579843 eV Core-core repulsion = 23606.191151 eV Total energy + Delta-G solvation = -3623.388691 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.67119 -38.97546 -37.73074 -36.38972 -34.18641 -32.26782 -31.32458 -31.03415 -29.57932 -28.48953 -27.55201 -26.98959 -23.90392 -23.00306 -22.98647 -22.36728 -21.31884 -20.09852 -18.94869 -17.51720 -17.27153 -16.98314 -16.02609 -15.93254 -15.55428 -15.20881 -14.57645 -14.52963 -14.50905 -14.01583 -13.66747 -13.56502 -13.44660 -13.17478 -12.90796 -12.76045 -12.57411 -12.42612 -12.31184 -12.11678 -11.98640 -11.67791 -11.55801 -11.19307 -11.11952 -11.08448 -10.86404 -10.70420 -10.31794 -10.05596 -9.85874 -9.75129 -9.02723 -8.98446 -8.78886 -8.54769 -8.39287 -7.06850 -5.84321 -3.14946 1.13085 1.29192 2.71465 2.96632 3.39447 3.45382 3.47536 3.57563 3.87116 4.46820 4.52993 4.61825 4.71705 4.87868 4.92933 4.99511 5.02011 5.10535 5.16465 5.26313 5.32211 5.34490 5.43740 5.45374 5.49971 5.55070 5.57978 5.67975 5.72545 5.78941 5.93380 5.94669 5.95955 6.12413 6.22027 6.29695 6.34606 6.39217 6.39986 6.51741 6.57630 6.74425 6.81837 6.86536 6.89368 7.64312 7.69758 8.30118 8.33435 9.44853 9.98629 10.33684 11.37977 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017091 B = 0.003301 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.914880 B = 8481.300196 C = 9488.759177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.521 5.521 3 C 0.016 3.984 4 C 0.113 3.887 5 H 0.067 0.933 6 C 0.535 3.465 7 O -0.523 6.523 8 N -0.609 5.609 9 C 0.094 3.906 10 C -0.154 4.154 11 C 0.173 3.827 12 H 0.063 0.937 13 N -0.715 5.715 14 C -0.243 4.243 15 H 0.073 0.927 16 C -0.010 4.010 17 N -0.930 5.930 18 Si 0.908 3.092 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.101 3.899 23 C -0.080 4.080 24 C -0.083 4.083 25 C -0.125 4.125 26 C -0.116 4.116 27 C -0.122 4.122 28 C -0.112 4.112 29 H 0.025 0.975 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.022 0.978 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.386 0.614 40 H 0.256 0.744 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.134 0.866 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.922 -1.022 -7.929 24.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.245 5.245 3 C -0.132 4.132 4 C 0.002 3.998 5 H 0.084 0.916 6 C 0.322 3.678 7 O -0.399 6.399 8 N -0.343 5.343 9 C -0.030 4.030 10 C -0.195 4.195 11 C 0.061 3.939 12 H 0.081 0.919 13 N -0.355 5.355 14 C -0.374 4.374 15 H 0.091 0.909 16 C -0.207 4.207 17 N -0.578 5.578 18 Si 0.739 3.261 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.022 4.022 23 C -0.081 4.081 24 C -0.101 4.101 25 C -0.143 4.143 26 C -0.134 4.134 27 C -0.140 4.140 28 C -0.130 4.130 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.040 0.960 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.221 0.779 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.152 0.848 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -22.397 -1.217 -8.888 24.127 hybrid contribution 0.316 0.074 1.511 1.545 sum -22.081 -1.144 -7.378 23.309 Atomic orbital electron populations 1.22451 0.86640 1.02556 1.00754 1.61685 1.07681 1.14280 1.40858 1.22584 1.02877 0.87391 1.00350 1.20426 0.92474 0.92810 0.94111 0.91566 1.19752 0.88266 0.77266 0.82498 1.90682 1.71036 1.48117 1.30070 1.48416 1.08044 1.68443 1.09418 1.22298 0.97720 0.99696 0.83239 1.23402 0.95304 1.02656 0.98144 1.21278 0.86651 0.96413 0.89585 0.91914 1.42264 1.17724 1.18833 1.56713 1.19253 1.00428 0.96572 1.21188 0.90922 1.24772 0.97686 0.97177 1.01022 1.69676 1.18278 1.21401 1.48397 0.86102 0.79516 0.80368 0.80083 1.20470 1.21772 1.21800 1.22532 0.78545 1.00816 1.00345 1.19341 1.00762 0.93836 0.94180 1.21131 0.96908 0.94170 0.97884 1.21200 0.99743 0.94766 0.98592 1.21196 0.99631 0.99790 0.92803 1.21076 1.00305 0.94708 0.97872 1.21081 0.99022 0.95281 0.97609 0.95637 0.90925 0.90916 0.89461 0.90961 0.95990 0.91373 0.92323 0.90707 0.90518 0.77941 0.93400 0.91302 0.90516 0.84813 0.85992 0.86150 0.85875 0.85858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.26 60.06 0.56 0.78 16 2 N -0.52 -6.19 3.93 -245.99 -0.97 -7.15 16 3 C 0.02 0.18 9.19 60.07 0.55 0.73 16 4 C 0.11 1.41 1.50 -70.01 -0.11 1.31 16 5 H 0.07 0.75 7.38 -51.93 -0.38 0.36 16 6 C 0.54 8.46 6.21 -10.98 -0.07 8.39 16 7 O -0.52 -9.92 14.97 5.56 0.08 -9.83 16 8 N -0.61 -9.51 3.33 -170.53 -0.57 -10.08 16 9 C 0.09 1.24 6.01 -3.07 -0.02 1.23 16 10 C -0.15 -2.47 6.65 -24.90 -0.17 -2.64 16 11 C 0.17 3.33 3.69 -65.79 -0.24 3.09 16 12 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 13 N -0.71 -17.32 5.28 -51.36 -0.27 -17.59 16 14 C -0.24 -6.53 9.98 -15.06 -0.15 -6.68 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 16 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 17 N -0.93 -27.49 13.06 55.49 0.72 -26.77 16 18 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 C 0.10 1.80 6.53 -2.54 -0.02 1.78 16 23 C -0.08 -0.94 3.69 -104.63 -0.39 -1.33 16 24 C -0.08 -0.97 8.41 -39.58 -0.33 -1.31 16 25 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 26 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 27 C -0.12 -1.15 10.05 -39.58 -0.40 -1.54 16 28 C -0.11 -1.15 8.04 -39.59 -0.32 -1.46 16 29 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.67 6.36 -51.93 -0.33 0.34 16 32 H 0.09 1.24 5.68 -51.93 -0.30 0.95 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.07 0.81 5.18 -51.93 -0.27 0.54 16 36 H 0.06 0.67 7.94 -51.93 -0.41 0.26 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.39 9.98 7.71 -40.82 -0.31 9.67 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.07 1.26 8.00 -51.92 -0.42 0.85 16 42 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 43 H 0.13 1.70 7.71 -52.49 -0.40 1.29 16 44 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 46 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 47 H 0.12 1.08 6.82 -52.48 -0.36 0.73 16 LS Contribution 374.33 15.07 5.64 5.64 Total: -1.00 -31.29 374.33 -9.74 -41.03 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -7.37 Total: 9.07 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -1.98 Total: -1.18 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: -1.08 Total: -61.59 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.08 Total: -9.83 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.29 -9.74 -41.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019825674.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.587 kcal (2) G-P(sol) polarization free energy of solvation -31.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds