Wall clock time and date at job start Tue Mar 31 2020 11:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 111.00071 * 2 1 4 4 C 1.46897 * 111.00167 * 123.95743 * 2 1 3 5 5 H 1.08998 * 109.47212 * 299.99433 * 4 2 1 6 6 C 1.50708 * 109.46871 * 179.97438 * 4 2 1 7 7 O 1.21274 * 120.00422 * 340.00358 * 6 4 2 8 8 N 1.34782 * 119.99430 * 160.00127 * 6 4 2 9 9 C 1.47016 * 125.65387 * 359.97438 * 8 6 4 10 10 C 1.54319 * 107.27339 * 178.96386 * 9 8 6 11 11 C 1.55155 * 102.94326 * 337.80552 * 10 9 8 12 12 H 1.09006 * 111.00618 * 277.39604 * 11 10 9 13 13 N 1.46499 * 111.00563 * 153.57676 * 11 10 9 14 14 C 1.36939 * 119.99933 * 86.73069 * 13 11 10 15 15 H 1.08001 * 119.99700 * 359.72658 * 14 13 11 16 16 C 1.38810 * 120.00095 * 179.71972 * 14 13 11 17 17 N 1.31624 * 119.99740 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00044 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47201 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47080 * 120.00466 * 18 16 14 21 21 H 1.48506 * 109.47018 * 240.00565 * 18 16 14 22 22 C 1.47421 * 125.64301 * 179.97438 * 8 6 4 23 23 C 1.50701 * 109.47324 * 60.00227 * 4 2 1 24 24 C 1.38234 * 119.99838 * 39.72277 * 23 4 2 25 25 C 1.38239 * 120.00096 * 179.79301 * 24 23 4 26 26 C 1.38237 * 119.99292 * 0.44046 * 25 24 23 27 27 C 1.38235 * 120.00437 * 359.81324 * 26 25 24 28 28 C 1.38227 * 120.00084 * 220.00143 * 23 4 2 29 29 H 1.09004 * 109.47028 * 299.99629 * 1 2 3 30 30 H 1.09002 * 109.47231 * 59.99575 * 1 2 3 31 31 H 1.09000 * 109.46689 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47046 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47357 * 300.00884 * 3 2 1 34 34 H 1.09002 * 109.46692 * 60.00141 * 3 2 1 35 35 H 1.09002 * 109.87935 * 59.54008 * 9 8 6 36 36 H 1.09006 * 110.01022 * 298.45594 * 9 8 6 37 37 H 1.09000 * 110.71845 * 219.44538 * 10 9 8 38 38 H 1.09001 * 110.87435 * 96.24233 * 10 9 8 39 39 H 0.97001 * 119.99790 * 266.45042 * 13 11 10 40 40 H 0.96998 * 119.99409 * 179.97438 * 17 16 14 41 41 H 1.09009 * 110.36539 * 85.26829 * 22 8 6 42 42 H 1.08997 * 110.36976 * 322.94758 * 22 8 6 43 43 H 1.07999 * 120.00130 * 0.02562 * 24 23 4 44 44 H 1.07997 * 120.00213 * 180.27817 * 25 24 23 45 45 H 1.08000 * 119.99555 * 179.83606 * 26 25 24 46 46 H 1.07999 * 119.99834 * 179.97438 * 27 26 25 47 47 H 1.08007 * 119.99875 * 359.97438 * 28 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.6461 -0.3201 2.0687 6 6 3.5020 -0.7440 1.1037 7 8 4.0817 -0.4822 0.0712 8 7 4.2051 -1.0154 2.2212 9 6 3.6329 -1.3464 3.5344 10 6 4.8120 -1.6025 4.4965 11 6 5.9760 -1.9557 3.5334 12 1 5.9354 -3.0047 3.2395 13 7 7.2719 -1.6316 4.1347 14 6 7.9019 -2.5448 4.9374 15 1 7.4413 -3.5024 5.1307 16 6 9.1326 -2.2400 5.5026 17 7 9.6937 -1.0728 5.2673 18 14 9.9915 -3.4855 6.5981 19 1 9.1579 -4.7098 6.7038 20 1 11.3104 -3.8342 6.0114 21 1 10.1894 -2.9027 7.9496 22 6 5.6753 -1.0295 2.3289 23 6 1.5123 -2.1908 1.0504 24 6 1.4550 -2.8274 -0.1753 25 6 1.0159 -4.1358 -0.2548 26 6 0.6256 -4.8045 0.8904 27 6 0.6780 -4.1662 2.1155 28 6 1.1212 -2.8592 2.1953 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.0851 1.3423 0.0005 33 1 1.6459 1.8949 -0.8899 34 1 1.6459 1.8947 0.8900 35 1 3.0174 -2.2425 3.4553 36 1 3.0307 -0.5143 3.8993 37 1 4.5933 -2.4390 5.1602 38 1 5.0457 -0.7065 5.0716 39 1 7.6856 -0.7716 3.9610 40 1 10.5535 -0.8597 5.6625 41 1 6.0512 -0.0243 2.5204 42 1 6.1185 -1.4341 1.4191 43 1 1.7567 -2.3039 -1.0704 44 1 0.9753 -4.6347 -1.2118 45 1 0.2800 -5.8258 0.8281 46 1 0.3727 -4.6885 3.0100 47 1 1.1622 -2.3605 3.1525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019825674.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:43 Heat of formation + Delta-G solvation = 8.782655 kcal Electronic energy + Delta-G solvation = -27230.437276 eV Core-core repulsion = 23606.191151 eV Total energy + Delta-G solvation = -3624.246124 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.75165 -39.98247 -38.93882 -37.46046 -35.96376 -33.56839 -32.69238 -31.79348 -31.05572 -29.74234 -28.55130 -28.04235 -25.69027 -24.34672 -23.83991 -23.18039 -22.28963 -21.62844 -20.10012 -19.30176 -18.47767 -18.00027 -17.22338 -17.06060 -16.55954 -16.28286 -16.19405 -15.65129 -15.33577 -15.27622 -15.11896 -14.71418 -14.63488 -14.31611 -14.15476 -13.84942 -13.61723 -13.53081 -13.23947 -13.18535 -13.12010 -13.03301 -12.85142 -12.68865 -12.50589 -12.34869 -12.09314 -11.91911 -11.87267 -11.75153 -11.62713 -11.02260 -10.96357 -9.82323 -9.66086 -9.62097 -9.39077 -9.05984 -7.95549 -5.25991 0.34707 0.53074 1.49187 1.50278 1.51701 1.59987 1.77528 2.56583 2.77345 2.97961 3.34816 3.48290 3.65433 3.68164 3.87125 3.90816 4.04259 4.13232 4.19786 4.23131 4.25880 4.32733 4.34689 4.39736 4.48654 4.60952 4.63604 4.65335 4.67105 4.74917 4.79125 4.95340 5.00479 5.00634 5.05265 5.17189 5.19921 5.21407 5.40446 5.53495 5.56169 5.59290 5.65590 5.87302 6.01064 6.11591 6.25151 6.47728 7.06901 7.32000 8.02554 8.27174 9.28020 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017091 B = 0.003301 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.914880 B = 8481.300196 C = 9488.759177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.539 5.539 3 C 0.020 3.980 4 C 0.124 3.876 5 H 0.084 0.916 6 C 0.531 3.469 7 O -0.563 6.563 8 N -0.609 5.609 9 C 0.100 3.900 10 C -0.142 4.142 11 C 0.167 3.833 12 H 0.058 0.942 13 N -0.729 5.729 14 C -0.239 4.239 15 H 0.081 0.919 16 C -0.074 4.074 17 N -0.970 5.970 18 Si 0.973 3.027 19 H -0.263 1.263 20 H -0.297 1.297 21 H -0.293 1.293 22 C 0.110 3.890 23 C -0.094 4.094 24 C -0.100 4.100 25 C -0.132 4.132 26 C -0.117 4.117 27 C -0.123 4.123 28 C -0.116 4.116 29 H 0.037 0.963 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.035 0.965 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.374 0.626 40 H 0.251 0.749 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.114 0.886 44 H 0.135 0.865 45 H 0.144 0.856 46 H 0.148 0.852 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.844 -2.541 -6.726 26.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.263 5.263 3 C -0.128 4.128 4 C 0.013 3.987 5 H 0.102 0.898 6 C 0.320 3.680 7 O -0.442 6.442 8 N -0.343 5.343 9 C -0.022 4.022 10 C -0.182 4.182 11 C 0.057 3.943 12 H 0.076 0.924 13 N -0.369 5.369 14 C -0.370 4.370 15 H 0.099 0.901 16 C -0.266 4.266 17 N -0.620 5.620 18 Si 0.802 3.198 19 H -0.187 1.187 20 H -0.225 1.225 21 H -0.220 1.220 22 C -0.014 4.014 23 C -0.094 4.094 24 C -0.119 4.119 25 C -0.150 4.150 26 C -0.135 4.135 27 C -0.141 4.141 28 C -0.134 4.134 29 H 0.056 0.944 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.053 0.947 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.206 0.794 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.132 0.868 44 H 0.153 0.847 45 H 0.162 0.838 46 H 0.166 0.834 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -25.398 -2.766 -7.685 26.679 hybrid contribution 1.148 0.511 1.033 1.627 sum -24.250 -2.255 -6.652 25.247 Atomic orbital electron populations 1.22458 0.84707 1.02868 1.01839 1.61655 1.09371 1.14231 1.41070 1.22499 1.00869 0.87799 1.01658 1.20349 0.89413 0.93880 0.95108 0.89813 1.20493 0.89835 0.76007 0.81658 1.90661 1.72184 1.49757 1.31575 1.48471 1.06813 1.68465 1.10579 1.22408 0.96728 1.01947 0.81088 1.23192 0.94574 1.02570 0.97905 1.21403 0.85861 0.96259 0.90751 0.92420 1.42411 1.19492 1.17994 1.56957 1.19636 1.00284 0.96932 1.20186 0.90078 1.25574 0.98809 0.99016 1.03190 1.69832 1.18557 1.23424 1.50179 0.85075 0.78081 0.78711 0.77885 1.18682 1.22460 1.22023 1.22207 0.80557 0.99771 0.98892 1.19349 1.01879 0.93442 0.94770 1.21090 0.98192 0.95073 0.97510 1.21413 0.99483 0.94244 0.99861 1.21533 0.98701 1.00830 0.92446 1.21434 0.99338 0.94459 0.98830 1.21312 0.98655 0.95720 0.97702 0.94428 0.89873 0.90974 0.92659 0.89685 0.94653 0.89124 0.89377 0.89469 0.91590 0.79373 0.94012 0.92274 0.92450 0.86764 0.84695 0.83811 0.83413 0.84027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.26 127.69 1.18 1.65 16 2 N -0.54 -12.27 3.93 -932.19 -3.66 -15.93 16 3 C 0.02 0.44 9.19 127.69 1.17 1.61 16 4 C 0.12 2.90 1.50 43.43 0.07 2.96 16 5 H 0.08 1.63 7.38 -2.39 -0.02 1.62 16 6 C 0.53 16.67 6.21 87.66 0.54 17.22 16 7 O -0.56 -22.13 14.97 -3.01 -0.05 -22.17 16 8 N -0.61 -18.58 3.33 -811.83 -2.70 -21.28 16 9 C 0.10 2.38 6.01 86.73 0.52 2.90 16 10 C -0.14 -4.30 6.65 31.78 0.21 -4.09 16 11 C 0.17 6.43 3.69 46.38 0.17 6.60 16 12 H 0.06 2.28 8.13 -2.38 -0.02 2.26 16 13 N -0.73 -35.83 5.28 -316.40 -1.67 -37.50 16 14 C -0.24 -12.80 9.98 84.03 0.84 -11.96 16 15 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 16 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 17 N -0.97 -58.62 13.06 21.65 0.28 -58.34 16 18 Si 0.97 45.11 29.55 68.60 2.03 47.14 16 19 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 20 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 21 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 22 C 0.11 4.02 6.53 86.85 0.57 4.59 16 23 C -0.09 -2.01 3.69 -19.87 -0.07 -2.09 16 24 C -0.10 -2.28 8.41 22.27 0.19 -2.09 16 25 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 26 C -0.12 -1.83 10.05 22.27 0.22 -1.60 16 27 C -0.12 -1.86 10.05 22.27 0.22 -1.63 16 28 C -0.12 -1.98 8.04 22.27 0.18 -1.81 16 29 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.19 6.36 -2.39 -0.02 1.18 16 32 H 0.05 1.61 5.68 -2.39 -0.01 1.60 16 33 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.09 1.80 5.18 -2.39 -0.01 1.79 16 36 H 0.09 1.66 7.94 -2.38 -0.02 1.64 16 37 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.37 20.00 7.71 -92.71 -0.71 19.28 16 40 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 41 H 0.06 2.27 8.00 -2.38 -0.02 2.25 16 42 H 0.06 2.29 8.04 -2.39 -0.02 2.27 16 43 H 0.11 2.98 7.71 -2.91 -0.02 2.96 16 44 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 45 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 46 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 47 H 0.14 1.84 6.82 -2.91 -0.02 1.82 16 Total: -1.00 -69.42 374.33 1.19 -68.23 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: 0.25 Total: 33.48 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 6.71 Total: 6.38 kcal Atomic # 7 Polarization: -125.30 SS G_CDS: -7.75 Total: -133.05 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.05 Total: -22.17 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -69.42 1.19 -68.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019825674.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.014 kcal (2) G-P(sol) polarization free energy of solvation -69.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds