Wall clock time and date at job start Tue Mar 31 2020 11:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99863 * 2 1 4 4 C 1.46893 * 111.00249 * 123.95572 * 2 1 3 5 5 C 1.50702 * 109.47352 * 170.00148 * 4 2 1 6 6 C 1.38380 * 119.92750 * 89.99877 * 5 4 2 7 7 C 1.38341 * 120.29436 * 179.97438 * 6 5 4 8 8 C 1.37985 * 120.14003 * 359.97438 * 7 6 5 9 9 C 1.39555 * 119.85466 * 0.02605 * 8 7 6 10 10 C 1.47844 * 120.14222 * 180.02562 * 9 8 7 11 11 O 1.21557 * 119.99918 * 180.02562 * 10 9 8 12 12 N 1.34773 * 120.00397 * 359.97438 * 10 9 8 13 13 C 1.46498 * 120.00487 * 179.97438 * 12 10 9 14 14 H 1.09000 * 112.84451 * 23.80884 * 13 12 10 15 15 C 1.53779 * 113.61507 * 155.00196 * 13 12 10 16 16 C 1.53779 * 87.08129 * 139.98259 * 15 13 12 17 17 H 1.08998 * 113.61431 * 220.01793 * 16 15 13 18 18 N 1.46511 * 113.61113 * 89.19936 * 16 15 13 19 19 C 1.36939 * 119.99466 * 154.99932 * 18 16 15 20 20 H 1.07999 * 120.00353 * 0.02562 * 19 18 16 21 21 C 1.38814 * 119.99464 * 179.97438 * 19 18 16 22 22 N 1.31615 * 120.00260 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99740 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47248 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47080 * 119.99980 * 23 21 19 26 26 H 1.48499 * 109.47209 * 239.99764 * 23 21 19 27 27 C 1.53780 * 87.08215 * 334.56852 * 16 15 13 28 28 C 1.37935 * 119.92537 * 269.72480 * 5 4 2 29 29 H 1.09002 * 109.47401 * 56.04417 * 1 2 3 30 30 H 1.09001 * 109.46874 * 296.04430 * 1 2 3 31 31 H 1.09004 * 109.46970 * 176.04563 * 1 2 3 32 32 H 1.09005 * 109.47361 * 59.99945 * 3 2 1 33 33 H 1.08997 * 109.47533 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47597 * 300.00325 * 3 2 1 35 35 H 1.09009 * 109.47180 * 289.99861 * 4 2 1 36 36 H 1.08996 * 109.47374 * 50.00147 * 4 2 1 37 37 H 1.07997 * 119.85303 * 359.97438 * 6 5 4 38 38 H 1.07994 * 119.92809 * 180.02562 * 7 6 5 39 39 H 1.07997 * 120.06958 * 179.97438 * 8 7 6 40 40 H 0.97002 * 119.99693 * 0.02562 * 12 10 9 41 41 H 1.09001 * 113.61159 * 254.53288 * 15 13 12 42 42 H 1.09000 * 113.61339 * 25.43355 * 15 13 12 43 43 H 0.96999 * 119.99777 * 334.99772 * 18 16 15 44 44 H 0.97001 * 120.00178 * 179.97438 * 22 21 19 45 45 H 1.09003 * 113.61305 * 270.88433 * 27 16 15 46 46 H 1.09000 * 113.61567 * 139.98134 * 27 16 15 47 47 H 1.07996 * 120.07778 * 359.97438 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4818 -0.9524 0.9728 6 6 4.3571 -0.0165 1.4951 7 6 5.7230 -0.1804 1.3487 8 6 6.2212 -1.2801 0.6805 9 6 5.3439 -2.2277 0.1514 10 6 5.8708 -3.4086 -0.5652 11 8 5.1043 -4.2322 -1.0255 12 7 7.2009 -3.5716 -0.7091 13 6 7.7230 -4.7421 -1.4187 14 1 7.0031 -5.1699 -2.1165 15 6 9.1167 -4.5209 -2.0299 16 6 9.4545 -5.9523 -1.5805 17 1 10.4639 -6.0584 -1.1831 18 7 9.1255 -6.9736 -2.5781 19 6 9.7931 -8.1692 -2.5796 20 1 10.5618 -8.3595 -1.8453 21 6 9.4810 -9.1371 -3.5245 22 7 8.5432 -8.9058 -4.4185 23 14 10.3911 -10.7683 -3.5262 24 1 11.3892 -10.7795 -2.4266 25 1 9.4223 -11.8759 -3.3259 26 1 11.0850 -10.9467 -4.8269 27 6 8.3796 -5.7808 -0.4942 28 6 3.9669 -2.0586 0.3066 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3633 0.4512 0.9233 31 1 -0.3633 -1.0253 -0.0709 32 1 1.6459 1.8948 0.8900 33 1 3.0850 1.3425 -0.0005 34 1 1.6459 1.8949 -0.8899 35 1 1.7976 -0.2247 2.0628 36 1 1.5091 -1.7406 1.1755 37 1 3.9723 0.8457 2.0193 38 1 6.4007 0.5534 1.7591 39 1 7.2876 -1.4067 0.5666 40 1 7.8125 -2.9143 -0.3422 41 1 9.1036 -4.3948 -3.1125 42 1 9.7002 -3.7541 -1.5203 43 1 8.4348 -6.8028 -3.2374 44 1 8.3254 -9.5820 -5.0790 45 1 8.7617 -5.3584 0.4352 46 1 7.7717 -6.6717 -0.3370 47 1 3.2830 -2.7908 -0.0963 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021089385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:59 Heat of formation + Delta-G solvation = 31.481634 kcal Electronic energy + Delta-G solvation = -25487.600053 eV Core-core repulsion = 21864.338230 eV Total energy + Delta-G solvation = -3623.261823 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.40783 -39.24039 -37.93223 -37.07747 -34.09097 -32.88076 -31.85822 -31.27496 -29.63114 -27.96244 -27.11962 -25.08614 -25.01800 -23.67315 -23.00056 -22.31656 -21.51775 -20.15364 -18.86056 -17.53075 -17.35352 -16.42519 -16.12031 -15.85646 -15.65513 -15.46221 -14.92609 -14.71210 -14.64809 -14.37726 -13.95356 -13.82762 -13.21111 -13.01755 -12.80590 -12.71504 -12.66296 -12.36168 -12.20032 -12.07565 -11.98056 -11.87921 -11.68835 -11.60958 -11.21864 -10.87534 -10.78038 -10.24295 -10.11352 -9.92646 -9.70199 -9.58361 -9.18410 -9.15121 -8.90183 -8.71500 -8.64095 -6.98591 -5.77322 -3.07389 0.67352 1.09305 2.81976 3.31292 3.44244 3.49474 3.52173 3.56321 3.88914 4.35875 4.50012 4.57796 4.61507 4.74589 4.79785 4.94557 4.94749 5.00656 5.09360 5.11724 5.18817 5.27303 5.30689 5.34890 5.41769 5.49598 5.51342 5.55710 5.59126 5.72873 5.89719 6.00849 6.07828 6.10674 6.12139 6.22185 6.26931 6.39886 6.54885 6.61788 6.63407 6.67764 6.75039 6.81046 7.06031 7.68509 7.72023 8.37830 8.40819 9.51583 10.08078 10.42093 11.44897 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025544 B = 0.002144 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.870175 B =13055.963746 C =13766.835550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.542 5.542 3 C 0.019 3.981 4 C 0.094 3.906 5 C -0.090 4.090 6 C -0.094 4.094 7 C -0.128 4.128 8 C -0.086 4.086 9 C -0.128 4.128 10 C 0.552 3.448 11 O -0.533 6.533 12 N -0.712 5.712 13 C 0.125 3.875 14 H 0.115 0.885 15 C -0.164 4.164 16 C 0.172 3.828 17 H 0.068 0.932 18 N -0.705 5.705 19 C -0.245 4.245 20 H 0.073 0.927 21 C -0.012 4.012 22 N -0.929 5.929 23 Si 0.909 3.091 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.184 4.184 28 C -0.039 4.039 29 H 0.070 0.930 30 H 0.025 0.975 31 H 0.071 0.929 32 H 0.024 0.976 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.044 0.956 36 H 0.087 0.913 37 H 0.121 0.879 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.394 0.606 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.386 0.614 44 H 0.256 0.744 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.504 24.471 14.080 30.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.266 5.266 3 C -0.129 4.129 4 C -0.034 4.034 5 C -0.090 4.090 6 C -0.112 4.112 7 C -0.146 4.146 8 C -0.105 4.105 9 C -0.131 4.131 10 C 0.338 3.662 11 O -0.410 6.410 12 N -0.362 5.362 13 C 0.021 3.979 14 H 0.133 0.867 15 C -0.204 4.204 16 C 0.059 3.941 17 H 0.086 0.914 18 N -0.344 5.344 19 C -0.376 4.376 20 H 0.091 0.909 21 C -0.209 4.209 22 N -0.577 5.577 23 Si 0.740 3.260 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.226 4.226 28 C -0.058 4.058 29 H 0.089 0.911 30 H 0.043 0.957 31 H 0.089 0.911 32 H 0.043 0.957 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.139 0.861 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.229 0.771 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.220 0.780 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.790 23.446 13.290 29.030 hybrid contribution 0.215 -0.017 0.708 0.740 sum -10.575 23.429 13.998 29.269 Atomic orbital electron populations 1.22403 0.86820 1.02626 1.00526 1.61954 1.07911 1.14065 1.42652 1.22494 1.01461 0.88447 1.00514 1.21067 0.91269 0.99298 0.91719 1.19646 0.95012 0.95093 0.99254 1.21202 0.93333 0.98165 0.98537 1.21032 0.95310 0.98098 1.00152 1.21330 0.99365 0.93604 0.96241 1.20089 0.94477 0.96330 1.02167 1.18307 0.82807 0.85326 0.79734 1.90806 1.57121 1.44283 1.48784 1.46051 1.06296 1.26392 1.57500 1.22679 0.94639 0.85229 0.95310 0.86746 1.23903 0.95232 0.99892 1.01405 1.20905 0.95774 0.87429 0.90021 0.91366 1.42210 1.44506 1.13560 1.34110 1.19316 1.14601 0.91685 1.11956 0.90864 1.24793 0.99139 0.98780 0.98144 1.69677 1.33411 1.34770 1.19845 0.86091 0.78824 0.83870 0.77211 1.20495 1.21817 1.21839 1.24323 1.01019 0.98877 0.98414 1.21148 0.94139 0.96466 0.94085 0.91138 0.95658 0.91050 0.95725 0.90809 0.91315 0.93739 0.89498 0.86076 0.85447 0.85597 0.77063 0.90789 0.90360 0.77950 0.93413 0.91274 0.90989 0.84517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.57 60.07 0.57 0.73 16 2 N -0.54 -4.58 5.01 -252.72 -1.27 -5.85 16 3 C 0.02 0.13 9.25 60.06 0.56 0.69 16 4 C 0.09 0.75 5.12 -4.98 -0.03 0.73 16 5 C -0.09 -0.85 4.88 -104.68 -0.51 -1.36 16 6 C -0.09 -0.73 7.90 -39.49 -0.31 -1.05 16 7 C -0.13 -0.99 10.03 -39.64 -0.40 -1.38 16 8 C -0.09 -0.80 9.54 -39.18 -0.37 -1.18 16 9 C -0.13 -1.58 5.87 -104.97 -0.62 -2.20 16 10 C 0.55 8.67 7.77 -12.33 -0.10 8.57 16 11 O -0.53 -10.73 15.95 5.32 0.08 -10.64 16 12 N -0.71 -9.90 5.31 -53.96 -0.29 -10.19 16 13 C 0.13 2.13 4.12 -67.12 -0.28 1.85 16 14 H 0.11 2.35 7.46 -51.93 -0.39 1.96 16 15 C -0.16 -2.62 7.58 -25.92 -0.20 -2.82 16 16 C 0.17 3.38 4.56 -67.11 -0.31 3.07 16 17 H 0.07 1.31 8.10 -51.93 -0.42 0.88 16 18 N -0.71 -17.82 5.31 -52.63 -0.28 -18.09 16 19 C -0.24 -6.82 9.97 -15.06 -0.15 -6.97 16 20 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.46 13.06 55.49 0.72 -27.73 16 23 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 27 C -0.18 -3.29 7.68 -25.92 -0.20 -3.49 16 28 C -0.04 -0.47 9.24 -39.18 -0.36 -0.83 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.07 0.46 8.12 -51.93 -0.42 0.03 16 32 H 0.02 0.15 8.14 -51.93 -0.42 -0.28 16 33 H 0.07 0.55 5.89 -51.93 -0.31 0.24 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.04 0.30 8.06 -51.92 -0.42 -0.12 16 36 H 0.09 0.69 8.00 -51.93 -0.42 0.27 16 37 H 0.12 0.69 7.97 -52.49 -0.42 0.27 16 38 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.13 0.89 6.41 -52.49 -0.34 0.55 16 40 H 0.39 4.09 6.76 -40.82 -0.28 3.82 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.08 0.99 8.12 -51.93 -0.42 0.57 16 43 H 0.39 10.46 7.90 -40.82 -0.32 10.14 16 44 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 45 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 47 H 0.14 1.79 7.65 -52.49 -0.40 1.39 16 LS Contribution 385.72 15.07 5.81 5.81 Total: -1.00 -33.71 385.72 -10.50 -44.20 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -7.47 Total: 11.05 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -2.79 Total: -6.07 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: -1.11 Total: -61.86 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.08 Total: -10.64 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.71 -10.50 -44.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021089385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.686 kcal (2) G-P(sol) polarization free energy of solvation -33.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds