Wall clock time and date at job start Tue Mar 31 2020 11:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99863 * 2 1 4 4 C 1.46893 * 111.00249 * 123.95572 * 2 1 3 5 5 C 1.50702 * 109.47352 * 170.00148 * 4 2 1 6 6 C 1.38380 * 119.92750 * 89.99877 * 5 4 2 7 7 C 1.38341 * 120.29436 * 179.97438 * 6 5 4 8 8 C 1.37985 * 120.14003 * 359.97438 * 7 6 5 9 9 C 1.39555 * 119.85466 * 0.02605 * 8 7 6 10 10 C 1.47844 * 120.14222 * 180.02562 * 9 8 7 11 11 O 1.21557 * 119.99918 * 180.02562 * 10 9 8 12 12 N 1.34773 * 120.00397 * 359.97438 * 10 9 8 13 13 C 1.46498 * 120.00487 * 179.97438 * 12 10 9 14 14 H 1.09000 * 112.84451 * 23.80884 * 13 12 10 15 15 C 1.53779 * 113.61507 * 155.00196 * 13 12 10 16 16 C 1.53779 * 87.08129 * 139.98259 * 15 13 12 17 17 H 1.08998 * 113.61431 * 220.01793 * 16 15 13 18 18 N 1.46511 * 113.61113 * 89.19936 * 16 15 13 19 19 C 1.36939 * 119.99466 * 154.99932 * 18 16 15 20 20 H 1.07999 * 120.00353 * 0.02562 * 19 18 16 21 21 C 1.38814 * 119.99464 * 179.97438 * 19 18 16 22 22 N 1.31615 * 120.00260 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99740 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47248 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47080 * 119.99980 * 23 21 19 26 26 H 1.48499 * 109.47209 * 239.99764 * 23 21 19 27 27 C 1.53780 * 87.08215 * 334.56852 * 16 15 13 28 28 C 1.37935 * 119.92537 * 269.72480 * 5 4 2 29 29 H 1.09002 * 109.47401 * 56.04417 * 1 2 3 30 30 H 1.09001 * 109.46874 * 296.04430 * 1 2 3 31 31 H 1.09004 * 109.46970 * 176.04563 * 1 2 3 32 32 H 1.09005 * 109.47361 * 59.99945 * 3 2 1 33 33 H 1.08997 * 109.47533 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47597 * 300.00325 * 3 2 1 35 35 H 1.09009 * 109.47180 * 289.99861 * 4 2 1 36 36 H 1.08996 * 109.47374 * 50.00147 * 4 2 1 37 37 H 1.07997 * 119.85303 * 359.97438 * 6 5 4 38 38 H 1.07994 * 119.92809 * 180.02562 * 7 6 5 39 39 H 1.07997 * 120.06958 * 179.97438 * 8 7 6 40 40 H 0.97002 * 119.99693 * 0.02562 * 12 10 9 41 41 H 1.09001 * 113.61159 * 254.53288 * 15 13 12 42 42 H 1.09000 * 113.61339 * 25.43355 * 15 13 12 43 43 H 0.96999 * 119.99777 * 334.99772 * 18 16 15 44 44 H 0.97001 * 120.00178 * 179.97438 * 22 21 19 45 45 H 1.09003 * 113.61305 * 270.88433 * 27 16 15 46 46 H 1.09000 * 113.61567 * 139.98134 * 27 16 15 47 47 H 1.07996 * 120.07778 * 359.97438 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4818 -0.9524 0.9728 6 6 4.3571 -0.0165 1.4951 7 6 5.7230 -0.1804 1.3487 8 6 6.2212 -1.2801 0.6805 9 6 5.3439 -2.2277 0.1514 10 6 5.8708 -3.4086 -0.5652 11 8 5.1043 -4.2322 -1.0255 12 7 7.2009 -3.5716 -0.7091 13 6 7.7230 -4.7421 -1.4187 14 1 7.0031 -5.1699 -2.1165 15 6 9.1167 -4.5209 -2.0299 16 6 9.4545 -5.9523 -1.5805 17 1 10.4639 -6.0584 -1.1831 18 7 9.1255 -6.9736 -2.5781 19 6 9.7931 -8.1692 -2.5796 20 1 10.5618 -8.3595 -1.8453 21 6 9.4810 -9.1371 -3.5245 22 7 8.5432 -8.9058 -4.4185 23 14 10.3911 -10.7683 -3.5262 24 1 11.3892 -10.7795 -2.4266 25 1 9.4223 -11.8759 -3.3259 26 1 11.0850 -10.9467 -4.8269 27 6 8.3796 -5.7808 -0.4942 28 6 3.9669 -2.0586 0.3066 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3633 0.4512 0.9233 31 1 -0.3633 -1.0253 -0.0709 32 1 1.6459 1.8948 0.8900 33 1 3.0850 1.3425 -0.0005 34 1 1.6459 1.8949 -0.8899 35 1 1.7976 -0.2247 2.0628 36 1 1.5091 -1.7406 1.1755 37 1 3.9723 0.8457 2.0193 38 1 6.4007 0.5534 1.7591 39 1 7.2876 -1.4067 0.5666 40 1 7.8125 -2.9143 -0.3422 41 1 9.1036 -4.3948 -3.1125 42 1 9.7002 -3.7541 -1.5203 43 1 8.4348 -6.8028 -3.2374 44 1 8.3254 -9.5820 -5.0790 45 1 8.7617 -5.3584 0.4352 46 1 7.7717 -6.6717 -0.3370 47 1 3.2830 -2.7908 -0.0963 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021089385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:59 Heat of formation + Delta-G solvation = 7.386927 kcal Electronic energy + Delta-G solvation = -25488.644878 eV Core-core repulsion = 21864.338230 eV Total energy + Delta-G solvation = -3624.306648 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.47245 -40.29345 -39.21021 -37.80749 -35.78257 -34.45509 -32.74079 -32.15729 -31.47351 -28.48583 -27.77279 -26.55912 -26.47723 -25.30574 -23.80671 -23.51036 -22.24970 -21.26168 -20.28031 -19.34959 -18.55394 -17.60221 -16.98894 -16.71743 -16.45760 -16.41492 -16.25781 -16.05743 -15.70970 -15.46647 -15.28510 -14.98101 -14.68835 -14.40089 -13.77486 -13.70936 -13.43632 -13.31330 -13.26365 -13.20619 -12.95861 -12.84270 -12.84063 -12.60586 -12.49323 -12.36485 -12.12242 -11.89521 -11.83608 -11.72032 -11.35846 -10.99238 -10.85866 -10.14382 -9.86134 -9.81002 -9.26741 -9.03840 -7.96127 -5.26160 -0.14385 0.37344 1.46803 1.48526 1.58541 1.81998 2.14858 2.54972 2.77187 3.24378 3.35803 3.60422 3.68375 3.70696 3.83821 3.89054 3.94333 4.12482 4.18174 4.29548 4.30487 4.31647 4.37004 4.44218 4.55240 4.61732 4.70407 4.76106 4.79374 4.82198 4.89677 4.99646 5.01391 5.03366 5.04459 5.14581 5.23563 5.29745 5.35387 5.41432 5.50510 5.53928 5.66758 5.91524 6.04588 6.09272 6.26270 6.56375 7.22671 7.30585 8.06895 8.28130 9.27686 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025544 B = 0.002144 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.870175 B =13055.963746 C =13766.835550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.566 5.566 3 C 0.020 3.980 4 C 0.095 3.905 5 C -0.092 4.092 6 C -0.082 4.082 7 C -0.119 4.119 8 C -0.081 4.081 9 C -0.151 4.151 10 C 0.546 3.454 11 O -0.593 6.593 12 N -0.693 5.693 13 C 0.128 3.872 14 H 0.068 0.932 15 C -0.137 4.137 16 C 0.152 3.848 17 H 0.082 0.918 18 N -0.724 5.724 19 C -0.242 4.242 20 H 0.084 0.916 21 C -0.082 4.082 22 N -0.973 5.973 23 Si 0.977 3.023 24 H -0.261 1.261 25 H -0.298 1.298 26 H -0.292 1.292 27 C -0.171 4.171 28 C -0.062 4.062 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.152 0.848 38 H 0.166 0.834 39 H 0.152 0.848 40 H 0.417 0.583 41 H 0.061 0.939 42 H 0.129 0.871 43 H 0.371 0.629 44 H 0.250 0.750 45 H 0.108 0.892 46 H 0.033 0.967 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.602 27.805 16.831 33.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.291 5.291 3 C -0.128 4.128 4 C -0.032 4.032 5 C -0.093 4.093 6 C -0.101 4.101 7 C -0.137 4.137 8 C -0.099 4.099 9 C -0.154 4.154 10 C 0.336 3.664 11 O -0.475 6.475 12 N -0.345 5.345 13 C 0.023 3.977 14 H 0.086 0.914 15 C -0.176 4.176 16 C 0.041 3.959 17 H 0.100 0.900 18 N -0.361 5.361 19 C -0.373 4.373 20 H 0.102 0.898 21 C -0.273 4.273 22 N -0.623 5.623 23 Si 0.806 3.194 24 H -0.185 1.185 25 H -0.225 1.225 26 H -0.220 1.220 27 C -0.213 4.213 28 C -0.082 4.082 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.169 0.831 38 H 0.183 0.817 39 H 0.170 0.830 40 H 0.256 0.744 41 H 0.080 0.920 42 H 0.147 0.853 43 H 0.202 0.798 44 H 0.059 0.941 45 H 0.126 0.874 46 H 0.052 0.948 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.831 26.851 16.111 32.535 hybrid contribution -0.423 -0.915 -0.049 1.009 sum -9.254 25.936 16.063 31.880 Atomic orbital electron populations 1.22406 0.85992 1.02558 1.01319 1.61927 1.08909 1.15075 1.43167 1.22496 1.01182 0.87775 1.01320 1.21050 0.90439 0.99235 0.92474 1.19789 0.96127 0.94531 0.98833 1.21590 0.93394 0.98034 0.97072 1.21475 0.95771 0.97799 0.98650 1.21610 1.00144 0.92944 0.95250 1.19876 0.95058 0.96304 1.04168 1.18953 0.82787 0.85707 0.78994 1.90775 1.58573 1.46682 1.51430 1.45762 1.06236 1.25765 1.56714 1.22256 0.94407 0.86243 0.94763 0.91391 1.23751 0.94231 0.98493 1.01142 1.21244 0.96652 0.88273 0.89724 0.90019 1.42427 1.44131 1.14390 1.35187 1.19773 1.13922 0.92469 1.11161 0.89801 1.25675 1.00598 1.02590 0.98482 1.69853 1.35670 1.35771 1.21040 0.85010 0.77658 0.79220 0.77476 1.18467 1.22502 1.21963 1.24197 0.99666 0.97811 0.99585 1.21071 0.93968 0.97364 0.95767 0.90731 0.94438 0.91587 0.94205 0.91142 0.91231 0.91826 0.90449 0.83073 0.81672 0.82995 0.74412 0.92015 0.85309 0.79761 0.94078 0.87408 0.94810 0.87480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.57 127.69 1.22 1.53 16 2 N -0.57 -9.09 5.01 -953.46 -4.78 -13.87 16 3 C 0.02 0.24 9.25 127.69 1.18 1.42 16 4 C 0.10 1.45 5.12 85.56 0.44 1.89 16 5 C -0.09 -1.64 4.88 -19.90 -0.10 -1.74 16 6 C -0.08 -0.99 7.90 22.33 0.18 -0.82 16 7 C -0.12 -1.29 10.03 22.23 0.22 -1.07 16 8 C -0.08 -1.24 9.54 22.53 0.21 -1.02 16 9 C -0.15 -3.70 5.87 -20.09 -0.12 -3.82 16 10 C 0.55 17.73 7.77 86.79 0.67 18.41 16 11 O -0.59 -25.97 15.95 -3.90 -0.06 -26.03 16 12 N -0.69 -18.59 5.31 -442.92 -2.35 -20.94 16 13 C 0.13 4.40 4.12 45.52 0.19 4.58 16 14 H 0.07 3.02 7.46 -2.39 -0.02 3.00 16 15 C -0.14 -4.11 7.58 31.12 0.24 -3.88 16 16 C 0.15 5.84 4.56 45.51 0.21 6.04 16 17 H 0.08 2.93 8.10 -2.39 -0.02 2.91 16 18 N -0.72 -37.50 5.31 -320.43 -1.70 -39.20 16 19 C -0.24 -13.62 9.97 84.03 0.84 -12.78 16 20 H 0.08 4.45 7.83 -2.91 -0.02 4.42 16 21 C -0.08 -4.81 5.50 84.86 0.47 -4.35 16 22 N -0.97 -61.94 13.06 21.65 0.28 -61.65 16 23 Si 0.98 47.14 29.55 68.60 2.03 49.17 16 24 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 25 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 26 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 27 C -0.17 -6.01 7.68 31.12 0.24 -5.77 16 28 C -0.06 -1.55 9.24 22.53 0.21 -1.34 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 30 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.07 0.87 8.12 -2.38 -0.02 0.85 16 32 H 0.04 0.35 8.14 -2.38 -0.02 0.33 16 33 H 0.07 0.87 5.89 -2.39 -0.01 0.85 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.06 0.71 8.06 -2.38 -0.02 0.69 16 36 H 0.08 1.28 8.00 -2.39 -0.02 1.26 16 37 H 0.15 0.95 7.97 -2.91 -0.02 0.93 16 38 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 39 H 0.15 1.42 6.41 -2.91 -0.02 1.40 16 40 H 0.42 7.23 6.76 -92.71 -0.63 6.60 16 41 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.13 2.61 8.12 -2.39 -0.02 2.59 16 43 H 0.37 21.15 7.90 -92.71 -0.73 20.42 16 44 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 45 H 0.11 2.95 8.14 -2.39 -0.02 2.94 16 46 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.11 3.20 7.65 -2.91 -0.02 3.18 16 Total: -1.00 -79.52 385.72 -0.67 -80.19 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: -0.38 Total: 35.04 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 6.30 Total: -2.71 kcal Atomic # 7 Polarization: -127.12 SS G_CDS: -8.55 Total: -135.66 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.06 Total: -26.03 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -79.52 -0.67 -80.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021089385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.575 kcal (2) G-P(sol) polarization free energy of solvation -79.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds