Wall clock time and date at job start Tue Mar 31 2020 11:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 111.00046 * 2 1 4 4 C 1.46902 * 111.00103 * 123.95079 * 2 1 3 5 5 C 1.50706 * 109.46851 * 66.04459 * 4 2 1 6 6 C 1.37972 * 120.07358 * 260.00049 * 5 4 2 7 7 C 1.38336 * 120.14648 * 179.97438 * 6 5 4 8 8 C 1.38385 * 120.29153 * 0.02562 * 7 6 5 9 9 C 1.37942 * 120.14390 * 359.97438 * 8 7 6 10 10 C 1.39557 * 120.07067 * 79.97758 * 5 4 2 11 11 C 1.47843 * 120.14528 * 0.02562 * 10 5 4 12 12 O 1.21549 * 119.99850 * 359.97438 * 11 10 5 13 13 N 1.34780 * 119.99634 * 179.97438 * 11 10 5 14 14 C 1.46502 * 119.99332 * 179.97438 * 13 11 10 15 15 H 1.08994 * 112.85213 * 334.66391 * 14 13 11 16 16 C 1.53779 * 113.61331 * 105.87122 * 14 13 11 17 17 C 1.54040 * 86.98970 * 89.15686 * 16 14 13 18 18 H 1.09005 * 113.61401 * 270.88256 * 17 16 14 19 19 N 1.46504 * 113.69700 * 139.99313 * 17 16 14 20 20 C 1.36934 * 120.00255 * 107.46631 * 19 17 16 21 21 H 1.08002 * 120.00207 * 359.97438 * 20 19 17 22 22 C 1.38808 * 119.99951 * 179.97438 * 20 19 17 23 23 N 1.31616 * 120.00184 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00106 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47292 * 60.00316 * 24 22 20 26 26 H 1.48497 * 109.47535 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47633 * 300.00428 * 24 22 20 28 28 C 1.53775 * 87.07972 * 25.43048 * 17 16 14 29 29 H 1.09001 * 109.47206 * 296.04671 * 1 2 3 30 30 H 1.09000 * 109.47128 * 56.04709 * 1 2 3 31 31 H 1.09000 * 109.47165 * 176.05262 * 1 2 3 32 32 H 1.08999 * 109.47491 * 183.95444 * 3 2 1 33 33 H 1.09000 * 109.46949 * 303.95246 * 3 2 1 34 34 H 1.08999 * 109.47581 * 63.94934 * 3 2 1 35 35 H 1.09003 * 109.47188 * 306.04556 * 4 2 1 36 36 H 1.08998 * 109.46802 * 186.04327 * 4 2 1 37 37 H 1.08005 * 119.93155 * 359.95600 * 6 5 4 38 38 H 1.08003 * 119.85732 * 180.02562 * 7 6 5 39 39 H 1.07998 * 119.92699 * 179.70737 * 8 7 6 40 40 H 1.07993 * 120.07351 * 179.97438 * 9 8 7 41 41 H 0.96997 * 119.99895 * 0.02562 * 13 11 10 42 42 H 1.09001 * 113.61518 * 203.66332 * 16 14 13 43 43 H 1.09005 * 113.61174 * 334.55713 * 16 14 13 44 44 H 0.97003 * 119.99648 * 287.46577 * 19 17 16 45 45 H 0.96998 * 120.00229 * 179.97438 * 23 22 20 46 46 H 1.09000 * 113.61578 * 220.02250 * 28 17 16 47 47 H 1.09001 * 113.69043 * 89.12860 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6369 -2.2204 0.9729 6 6 0.5655 -2.7506 1.6618 7 6 0.2346 -4.0854 1.5113 8 6 0.9752 -4.8976 0.6704 9 6 2.0488 -4.3800 -0.0240 10 6 2.3876 -3.0338 0.1230 11 6 3.5370 -2.4723 -0.6182 12 8 3.8297 -1.2998 -0.4883 13 7 4.2603 -3.2607 -1.4379 14 6 5.3990 -2.7041 -2.1727 15 1 5.3125 -1.6301 -2.3372 16 6 6.7643 -3.1333 -1.6102 17 6 6.6803 -4.3477 -2.5542 18 1 6.1835 -5.2112 -2.1117 19 7 7.9556 -4.6890 -3.1894 20 6 8.6404 -5.8067 -2.7933 21 1 8.2406 -6.4365 -2.0123 22 6 9.8484 -6.1303 -3.3955 23 7 10.3360 -5.3626 -4.3469 24 14 10.7829 -7.6547 -2.8547 25 1 9.9391 -8.8567 -3.0748 26 1 12.0334 -7.7756 -3.6464 27 1 11.1194 -7.5435 -1.4126 28 6 5.7588 -3.4946 -3.4418 29 1 -0.3634 0.4513 0.9233 30 1 -0.3633 0.5740 -0.8524 31 1 -0.3633 -1.0252 -0.0707 32 1 3.0828 1.3433 -0.0709 33 1 1.5898 1.9163 -0.8525 34 1 1.7044 1.8724 0.9232 35 1 1.5612 -0.3871 2.0629 36 1 3.0798 -0.6610 1.1756 37 1 -0.0161 -2.1223 2.3202 38 1 -0.6053 -4.4955 2.0525 39 1 0.7146 -5.9399 0.5610 40 1 2.6261 -5.0149 -0.6796 41 1 4.0265 -4.1963 -1.5418 42 1 7.5733 -2.4451 -1.8551 43 1 6.7375 -3.3975 -0.5530 44 1 8.3150 -4.1231 -3.8906 45 1 11.1803 -5.5885 -4.7675 46 1 4.9208 -4.0504 -3.8624 47 1 6.2922 -2.9046 -4.1872 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021093987.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:03 Heat of formation + Delta-G solvation = 40.539037 kcal Electronic energy + Delta-G solvation = -26418.805539 eV Core-core repulsion = 22795.936475 eV Total energy + Delta-G solvation = -3622.869064 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.56807 -39.06543 -37.51951 -37.09895 -34.03369 -32.79035 -31.87612 -31.12407 -29.72824 -27.64808 -27.00210 -25.08753 -24.80600 -23.83065 -22.66980 -22.20743 -21.17939 -20.49217 -18.86326 -17.83088 -17.06313 -16.27863 -15.90324 -15.65597 -15.57567 -15.10767 -14.95782 -14.59927 -14.52838 -14.40641 -13.99853 -13.71303 -13.31031 -13.00303 -12.74368 -12.60686 -12.45320 -12.20117 -12.00419 -11.86711 -11.81729 -11.72998 -11.66037 -11.53237 -11.19069 -10.87843 -10.74817 -10.27533 -10.22487 -9.89455 -9.53321 -9.45133 -9.18847 -9.03531 -8.88404 -8.64641 -8.33897 -6.97012 -5.79031 -3.07930 0.72190 1.08545 2.91369 3.28817 3.42694 3.47311 3.48276 3.67513 4.09382 4.54291 4.55148 4.58282 4.63404 4.80463 5.00599 5.06343 5.09976 5.18406 5.22024 5.27226 5.30922 5.38078 5.47983 5.49809 5.53231 5.61384 5.65244 5.71700 5.84388 5.89738 5.94007 5.97494 6.06343 6.16055 6.19130 6.28773 6.33197 6.36405 6.57988 6.63099 6.68556 6.74610 6.96098 7.02389 7.13378 7.67446 7.71233 8.39466 8.42812 9.50569 10.08389 10.42817 11.43294 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019528 B = 0.002713 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.494456 B =10316.667556 C =11315.115837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.524 5.524 3 C 0.033 3.967 4 C 0.089 3.911 5 C -0.023 4.023 6 C -0.126 4.126 7 C -0.099 4.099 8 C -0.127 4.127 9 C -0.088 4.088 10 C -0.111 4.111 11 C 0.558 3.442 12 O -0.517 6.517 13 N -0.705 5.705 14 C 0.120 3.880 15 H 0.096 0.904 16 C -0.176 4.176 17 C 0.167 3.833 18 H 0.072 0.928 19 N -0.712 5.712 20 C -0.245 4.245 21 H 0.070 0.930 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.907 3.093 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.159 4.159 29 H 0.020 0.980 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.017 0.983 35 H 0.030 0.970 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.397 0.603 42 H 0.085 0.915 43 H 0.056 0.944 44 H 0.386 0.614 45 H 0.256 0.744 46 H 0.063 0.937 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.585 7.338 11.063 27.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.247 5.247 3 C -0.115 4.115 4 C -0.038 4.038 5 C -0.025 4.025 6 C -0.145 4.145 7 C -0.117 4.117 8 C -0.146 4.146 9 C -0.107 4.107 10 C -0.114 4.114 11 C 0.345 3.655 12 O -0.393 6.393 13 N -0.356 5.356 14 C 0.015 3.985 15 H 0.114 0.886 16 C -0.218 4.218 17 C 0.054 3.946 18 H 0.090 0.910 19 N -0.350 5.350 20 C -0.376 4.376 21 H 0.088 0.912 22 C -0.208 4.208 23 N -0.580 5.580 24 Si 0.738 3.262 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.199 4.199 29 H 0.038 0.962 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.036 0.964 35 H 0.048 0.952 36 H 0.131 0.869 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.232 0.768 42 H 0.103 0.897 43 H 0.075 0.925 44 H 0.220 0.780 45 H 0.066 0.934 46 H 0.082 0.918 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -23.077 7.800 10.748 26.626 hybrid contribution 0.214 -0.846 0.742 1.145 sum -22.863 6.954 11.490 26.516 Atomic orbital electron populations 1.22468 0.88362 1.02049 0.99936 1.61779 1.06548 1.13738 1.42597 1.22302 1.01711 0.87996 0.99487 1.21275 1.03256 0.88642 0.90642 1.19845 0.93320 0.95461 0.93839 1.21041 0.97171 0.95662 1.00620 1.21287 0.99162 0.93658 0.97597 1.21107 0.95854 1.00189 0.97413 1.21386 0.96781 0.94111 0.98381 1.19857 0.97630 0.93956 1.00001 1.18123 0.81968 0.86005 0.79414 1.90698 1.69629 1.15717 1.63289 1.45651 1.31119 1.13290 1.45573 1.21771 0.85439 0.98248 0.93068 0.88613 1.24339 0.95426 1.01639 1.00417 1.21668 0.87693 0.93173 0.92040 0.90968 1.42395 1.19709 1.29201 1.43692 1.19247 1.01382 1.01213 1.15787 0.91192 1.24762 0.98171 0.99103 0.98809 1.69645 1.21206 1.39221 1.27943 0.86269 0.79282 0.82807 0.77821 1.21240 1.21668 1.21238 1.23849 1.00123 0.99360 0.96585 0.96176 0.91684 0.91537 0.90542 0.91789 0.96401 0.95204 0.86883 0.85885 0.85748 0.85447 0.85426 0.76831 0.89670 0.92484 0.78009 0.93376 0.91836 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.28 60.07 0.56 0.75 16 2 N -0.52 -6.10 4.30 -252.72 -1.09 -7.19 16 3 C 0.03 0.35 9.57 60.06 0.57 0.92 16 4 C 0.09 1.02 4.11 -4.97 -0.02 1.00 16 5 C -0.02 -0.26 4.61 -104.22 -0.48 -0.74 16 6 C -0.13 -1.12 8.72 -39.64 -0.35 -1.47 16 7 C -0.10 -0.77 10.04 -39.49 -0.40 -1.17 16 8 C -0.13 -1.05 10.03 -39.64 -0.40 -1.45 16 9 C -0.09 -0.86 9.54 -39.18 -0.37 -1.24 16 10 C -0.11 -1.33 5.87 -104.97 -0.62 -1.95 16 11 C 0.56 7.93 7.75 -12.33 -0.10 7.83 16 12 O -0.52 -8.49 12.37 5.32 0.07 -8.43 16 13 N -0.71 -9.47 5.21 -53.96 -0.28 -9.75 16 14 C 0.12 1.84 4.30 -67.12 -0.29 1.55 16 15 H 0.10 1.54 7.50 -51.93 -0.39 1.15 16 16 C -0.18 -3.13 7.70 -25.78 -0.20 -3.32 16 17 C 0.17 3.20 4.37 -66.98 -0.29 2.91 16 18 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 19 N -0.71 -17.64 5.41 -52.51 -0.28 -17.92 16 20 C -0.25 -6.74 9.97 -15.06 -0.15 -6.89 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 24 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 C -0.16 -2.55 7.57 -25.92 -0.20 -2.74 16 29 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 31 H 0.07 0.64 6.65 -51.93 -0.35 0.29 16 32 H 0.08 0.90 8.12 -51.93 -0.42 0.48 16 33 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 34 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.03 0.30 7.98 -51.93 -0.41 -0.11 16 36 H 0.11 1.54 5.84 -51.93 -0.30 1.24 16 37 H 0.12 0.87 8.04 -52.48 -0.42 0.44 16 38 H 0.12 0.67 8.06 -52.48 -0.42 0.24 16 39 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.13 1.05 6.41 -52.49 -0.34 0.72 16 41 H 0.40 4.54 6.74 -40.82 -0.28 4.26 16 42 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.39 10.15 7.93 -40.82 -0.32 9.82 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.09 1.50 8.12 -51.93 -0.42 1.08 16 LS Contribution 380.77 15.07 5.74 5.74 Total: -1.00 -31.87 380.77 -10.39 -42.26 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -7.42 Total: 11.84 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -2.82 Total: -6.45 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -0.93 Total: -62.16 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.07 Total: -8.43 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.87 -10.39 -42.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021093987.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.796 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds