Wall clock time and date at job start Tue Mar 31 2020 11:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 111.00046 * 2 1 4 4 C 1.46902 * 111.00103 * 123.95079 * 2 1 3 5 5 C 1.50706 * 109.46851 * 66.04459 * 4 2 1 6 6 C 1.37972 * 120.07358 * 260.00049 * 5 4 2 7 7 C 1.38336 * 120.14648 * 179.97438 * 6 5 4 8 8 C 1.38385 * 120.29153 * 0.02562 * 7 6 5 9 9 C 1.37942 * 120.14390 * 359.97438 * 8 7 6 10 10 C 1.39557 * 120.07067 * 79.97758 * 5 4 2 11 11 C 1.47843 * 120.14528 * 0.02562 * 10 5 4 12 12 O 1.21549 * 119.99850 * 359.97438 * 11 10 5 13 13 N 1.34780 * 119.99634 * 179.97438 * 11 10 5 14 14 C 1.46502 * 119.99332 * 179.97438 * 13 11 10 15 15 H 1.08994 * 112.85213 * 334.66391 * 14 13 11 16 16 C 1.53779 * 113.61331 * 105.87122 * 14 13 11 17 17 C 1.54040 * 86.98970 * 89.15686 * 16 14 13 18 18 H 1.09005 * 113.61401 * 270.88256 * 17 16 14 19 19 N 1.46504 * 113.69700 * 139.99313 * 17 16 14 20 20 C 1.36934 * 120.00255 * 107.46631 * 19 17 16 21 21 H 1.08002 * 120.00207 * 359.97438 * 20 19 17 22 22 C 1.38808 * 119.99951 * 179.97438 * 20 19 17 23 23 N 1.31616 * 120.00184 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00106 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47292 * 60.00316 * 24 22 20 26 26 H 1.48497 * 109.47535 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47633 * 300.00428 * 24 22 20 28 28 C 1.53775 * 87.07972 * 25.43048 * 17 16 14 29 29 H 1.09001 * 109.47206 * 296.04671 * 1 2 3 30 30 H 1.09000 * 109.47128 * 56.04709 * 1 2 3 31 31 H 1.09000 * 109.47165 * 176.05262 * 1 2 3 32 32 H 1.08999 * 109.47491 * 183.95444 * 3 2 1 33 33 H 1.09000 * 109.46949 * 303.95246 * 3 2 1 34 34 H 1.08999 * 109.47581 * 63.94934 * 3 2 1 35 35 H 1.09003 * 109.47188 * 306.04556 * 4 2 1 36 36 H 1.08998 * 109.46802 * 186.04327 * 4 2 1 37 37 H 1.08005 * 119.93155 * 359.95600 * 6 5 4 38 38 H 1.08003 * 119.85732 * 180.02562 * 7 6 5 39 39 H 1.07998 * 119.92699 * 179.70737 * 8 7 6 40 40 H 1.07993 * 120.07351 * 179.97438 * 9 8 7 41 41 H 0.96997 * 119.99895 * 0.02562 * 13 11 10 42 42 H 1.09001 * 113.61518 * 203.66332 * 16 14 13 43 43 H 1.09005 * 113.61174 * 334.55713 * 16 14 13 44 44 H 0.97003 * 119.99648 * 287.46577 * 19 17 16 45 45 H 0.96998 * 120.00229 * 179.97438 * 23 22 20 46 46 H 1.09000 * 113.61578 * 220.02250 * 28 17 16 47 47 H 1.09001 * 113.69043 * 89.12860 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6369 -2.2204 0.9729 6 6 0.5655 -2.7506 1.6618 7 6 0.2346 -4.0854 1.5113 8 6 0.9752 -4.8976 0.6704 9 6 2.0488 -4.3800 -0.0240 10 6 2.3876 -3.0338 0.1230 11 6 3.5370 -2.4723 -0.6182 12 8 3.8297 -1.2998 -0.4883 13 7 4.2603 -3.2607 -1.4379 14 6 5.3990 -2.7041 -2.1727 15 1 5.3125 -1.6301 -2.3372 16 6 6.7643 -3.1333 -1.6102 17 6 6.6803 -4.3477 -2.5542 18 1 6.1835 -5.2112 -2.1117 19 7 7.9556 -4.6890 -3.1894 20 6 8.6404 -5.8067 -2.7933 21 1 8.2406 -6.4365 -2.0123 22 6 9.8484 -6.1303 -3.3955 23 7 10.3360 -5.3626 -4.3469 24 14 10.7829 -7.6547 -2.8547 25 1 9.9391 -8.8567 -3.0748 26 1 12.0334 -7.7756 -3.6464 27 1 11.1194 -7.5435 -1.4126 28 6 5.7588 -3.4946 -3.4418 29 1 -0.3634 0.4513 0.9233 30 1 -0.3633 0.5740 -0.8524 31 1 -0.3633 -1.0252 -0.0707 32 1 3.0828 1.3433 -0.0709 33 1 1.5898 1.9163 -0.8525 34 1 1.7044 1.8724 0.9232 35 1 1.5612 -0.3871 2.0629 36 1 3.0798 -0.6610 1.1756 37 1 -0.0161 -2.1223 2.3202 38 1 -0.6053 -4.4955 2.0525 39 1 0.7146 -5.9399 0.5610 40 1 2.6261 -5.0149 -0.6796 41 1 4.0265 -4.1963 -1.5418 42 1 7.5733 -2.4451 -1.8551 43 1 6.7375 -3.3975 -0.5530 44 1 8.3150 -4.1231 -3.8906 45 1 11.1803 -5.5885 -4.7675 46 1 4.9208 -4.0504 -3.8624 47 1 6.2922 -2.9046 -4.1872 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021093987.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:02 Heat of formation + Delta-G solvation = 19.803371 kcal Electronic energy + Delta-G solvation = -26419.704705 eV Core-core repulsion = 22795.936475 eV Total energy + Delta-G solvation = -3623.768230 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.54772 -40.20244 -38.70283 -37.90072 -35.74398 -34.21461 -32.62324 -32.28105 -31.34072 -28.41628 -27.82175 -26.58494 -26.41110 -24.97607 -23.77117 -23.32905 -22.17173 -21.40983 -20.28765 -19.19728 -18.62626 -17.30776 -16.80124 -16.78244 -16.50178 -16.32139 -16.08857 -15.82847 -15.52791 -15.44791 -15.27070 -15.16498 -14.60716 -14.07588 -13.73093 -13.63348 -13.43937 -13.32045 -13.26271 -13.20907 -12.94261 -12.77573 -12.69035 -12.52861 -12.45916 -12.44342 -12.20343 -11.90072 -11.80701 -11.71647 -11.17923 -10.82509 -10.50681 -10.03404 -9.83652 -9.70234 -9.14241 -8.97938 -7.93855 -5.22453 -0.05123 0.40134 1.48167 1.51006 1.57011 2.00273 2.19823 2.57380 2.84939 3.30915 3.37455 3.70681 3.75269 3.82513 3.87673 3.90969 3.98028 4.18169 4.27867 4.32982 4.34193 4.35590 4.44639 4.53088 4.58915 4.60529 4.75125 4.75381 4.83572 4.89956 4.92434 4.99809 5.00271 5.05705 5.09142 5.15302 5.23351 5.30473 5.39554 5.51562 5.52937 5.55886 5.76482 5.97239 6.14727 6.24904 6.28023 6.65471 7.34152 7.35964 8.10830 8.33627 9.29320 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019528 B = 0.002713 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.494456 B =10316.667556 C =11315.115837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.037 3.963 4 C 0.094 3.906 5 C -0.038 4.038 6 C -0.127 4.127 7 C -0.090 4.090 8 C -0.128 4.128 9 C -0.093 4.093 10 C -0.136 4.136 11 C 0.553 3.447 12 O -0.546 6.546 13 N -0.700 5.700 14 C 0.141 3.859 15 H 0.089 0.911 16 C -0.172 4.172 17 C 0.154 3.846 18 H 0.082 0.918 19 N -0.727 5.727 20 C -0.245 4.245 21 H 0.078 0.922 22 C -0.077 4.077 23 N -0.970 5.970 24 Si 0.972 3.028 25 H -0.275 1.275 26 H -0.297 1.297 27 H -0.280 1.280 28 C -0.143 4.143 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.030 0.970 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.142 0.858 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.139 0.861 41 H 0.408 0.592 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.374 0.626 45 H 0.251 0.749 46 H 0.085 0.915 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.410 5.875 12.421 29.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.111 4.111 4 C -0.033 4.033 5 C -0.039 4.039 6 C -0.146 4.146 7 C -0.108 4.108 8 C -0.146 4.146 9 C -0.111 4.111 10 C -0.140 4.140 11 C 0.342 3.658 12 O -0.424 6.424 13 N -0.352 5.352 14 C 0.034 3.966 15 H 0.107 0.893 16 C -0.214 4.214 17 C 0.044 3.956 18 H 0.100 0.900 19 N -0.364 5.364 20 C -0.377 4.377 21 H 0.096 0.904 22 C -0.269 4.269 23 N -0.621 5.621 24 Si 0.801 3.199 25 H -0.201 1.201 26 H -0.224 1.224 27 H -0.206 1.206 28 C -0.182 4.182 29 H 0.051 0.949 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.102 0.898 37 H 0.160 0.840 38 H 0.174 0.826 39 H 0.172 0.828 40 H 0.157 0.843 41 H 0.245 0.755 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.206 0.794 45 H 0.060 0.940 46 H 0.103 0.897 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -25.969 6.322 12.143 29.356 hybrid contribution 0.972 -0.360 0.402 1.111 sum -24.997 5.963 12.545 28.597 Atomic orbital electron populations 1.22445 0.86932 1.02200 1.00769 1.61752 1.07961 1.14081 1.43070 1.22234 1.00365 0.88056 1.00448 1.21126 1.01545 0.89483 0.91171 1.19945 0.94340 0.95087 0.94558 1.21266 0.96440 0.96568 1.00298 1.21698 0.99380 0.93012 0.96701 1.21467 0.94938 1.01555 0.96594 1.21581 0.97506 0.93256 0.98792 1.19773 0.97651 0.95248 1.01285 1.18609 0.82385 0.85706 0.79112 1.90697 1.70532 1.17028 1.64188 1.45545 1.30381 1.13880 1.45354 1.21420 0.84873 0.97914 0.92376 0.89284 1.24183 0.96709 1.00666 0.99823 1.21992 0.86318 0.94118 0.93145 0.90022 1.42589 1.21437 1.28548 1.43860 1.19673 1.01369 1.01568 1.15067 0.90401 1.25576 0.99502 1.02283 0.99519 1.69807 1.21494 1.41167 1.29628 0.85229 0.77649 0.79674 0.77318 1.20068 1.22362 1.20620 1.23663 0.99699 0.98515 0.96338 0.94903 0.91253 0.91625 0.92730 0.91041 0.95146 0.94007 0.89807 0.84019 0.82622 0.82826 0.84303 0.75505 0.91270 0.92870 0.79388 0.94035 0.89684 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.28 127.69 1.18 1.61 16 2 N -0.54 -12.53 4.30 -953.46 -4.10 -16.63 16 3 C 0.04 0.78 9.57 127.69 1.22 2.00 16 4 C 0.09 2.15 4.11 85.56 0.35 2.50 16 5 C -0.04 -0.80 4.61 -19.61 -0.09 -0.89 16 6 C -0.13 -1.91 8.72 22.23 0.19 -1.72 16 7 C -0.09 -1.06 10.04 22.33 0.22 -0.84 16 8 C -0.13 -1.66 10.03 22.23 0.22 -1.44 16 9 C -0.09 -1.62 9.54 22.53 0.21 -1.40 16 10 C -0.14 -3.14 5.87 -20.09 -0.12 -3.26 16 11 C 0.55 15.71 7.75 86.79 0.67 16.38 16 12 O -0.55 -18.51 12.37 -3.87 -0.05 -18.56 16 13 N -0.70 -18.28 5.21 -442.91 -2.31 -20.59 16 14 C 0.14 4.27 4.30 45.52 0.20 4.46 16 15 H 0.09 2.90 7.50 -2.39 -0.02 2.88 16 16 C -0.17 -6.16 7.70 31.21 0.24 -5.92 16 17 C 0.15 5.87 4.37 45.60 0.20 6.07 16 18 H 0.08 2.95 8.10 -2.38 -0.02 2.93 16 19 N -0.73 -36.34 5.41 -320.03 -1.73 -38.07 16 20 C -0.24 -13.48 9.97 84.03 0.84 -12.64 16 21 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 22 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 23 N -0.97 -59.50 13.06 21.65 0.28 -59.22 16 24 Si 0.97 45.89 29.55 68.60 2.03 47.92 16 25 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 26 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 27 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 28 C -0.14 -4.44 7.57 31.12 0.24 -4.21 16 29 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.07 1.12 8.12 -2.39 -0.02 1.10 16 31 H 0.06 1.14 6.65 -2.39 -0.02 1.12 16 32 H 0.05 1.37 8.12 -2.39 -0.02 1.35 16 33 H 0.07 1.35 8.12 -2.39 -0.02 1.33 16 34 H 0.03 0.54 8.14 -2.39 -0.02 0.53 16 35 H 0.04 0.81 7.98 -2.39 -0.02 0.79 16 36 H 0.08 2.40 5.84 -2.39 -0.01 2.39 16 37 H 0.14 1.54 8.04 -2.91 -0.02 1.51 16 38 H 0.16 0.88 8.06 -2.91 -0.02 0.85 16 39 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 40 H 0.14 1.97 6.41 -2.91 -0.02 1.95 16 41 H 0.41 8.70 6.74 -92.71 -0.62 8.08 16 42 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 43 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 44 H 0.37 20.16 7.93 -92.71 -0.73 19.42 16 45 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 46 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.09 2.83 8.12 -2.39 -0.02 2.81 16 Total: -1.00 -69.83 380.77 -0.01 -69.84 By element: Atomic # 1 Polarization: 38.91 SS G_CDS: -0.38 Total: 38.52 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 6.25 Total: -3.21 kcal Atomic # 7 Polarization: -126.66 SS G_CDS: -7.86 Total: -134.51 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.05 Total: -18.56 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -69.83 -0.01 -69.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021093987.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.644 kcal (2) G-P(sol) polarization free energy of solvation -69.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds