Wall clock time and date at job start Tue Mar 31 2020 11:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35533 * 125.67949 * 2 1 4 4 C 1.35442 * 108.87264 * 180.25893 * 3 2 1 5 5 C 1.39837 * 107.86546 * 359.76799 * 4 3 2 6 6 C 1.37645 * 125.67459 * 179.85856 * 2 1 3 7 7 C 1.46672 * 126.23814 * 0.02562 * 6 2 1 8 8 O 1.21700 * 119.99936 * 25.81200 * 7 6 2 9 9 N 1.34773 * 120.00401 * 205.81672 * 7 6 2 10 10 C 1.47103 * 120.93756 * 6.87386 * 9 7 6 11 11 C 1.53139 * 109.62652 * 233.61037 * 10 9 7 12 12 C 1.53121 * 109.48727 * 306.36945 * 11 10 9 13 13 C 1.52862 * 109.33974 * 60.64005 * 12 11 10 14 14 H 1.09010 * 108.60143 * 57.11561 * 13 12 11 15 15 C 1.51250 * 109.76130 * 176.02601 * 13 12 11 16 16 N 1.46891 * 109.34732 * 68.22595 * 15 13 12 17 17 C 1.36937 * 120.76861 * 232.94461 * 16 15 13 18 18 H 1.08002 * 120.00214 * 142.66141 * 17 16 15 19 19 C 1.38814 * 120.00248 * 322.65501 * 17 16 15 20 20 N 1.31613 * 120.00242 * 172.29950 * 19 17 16 21 21 Si 1.86806 * 119.99506 * 352.30038 * 19 17 16 22 22 H 1.48495 * 109.47109 * 86.93198 * 21 19 17 23 23 H 1.48501 * 109.46717 * 206.92868 * 21 19 17 24 24 H 1.48496 * 109.47166 * 326.92756 * 21 19 17 25 25 C 1.46971 * 118.46052 * 52.91931 * 16 15 13 26 26 C 1.53099 * 108.62382 * 305.70095 * 25 16 15 27 27 C 1.47313 * 120.85157 * 187.84073 * 9 7 6 28 28 H 1.09001 * 110.07525 * 4.90006 * 27 9 7 29 29 H 1.09000 * 109.47266 * 264.42486 * 1 2 3 30 30 H 1.08999 * 109.46987 * 24.42222 * 1 2 3 31 31 H 1.08991 * 109.46773 * 144.41875 * 1 2 3 32 32 H 1.08003 * 125.56023 * 359.97438 * 3 2 1 33 33 H 1.08000 * 126.07044 * 179.78607 * 4 3 2 34 34 H 1.07997 * 126.45681 * 180.02562 * 5 4 3 35 35 H 1.09000 * 108.89493 * 113.78437 * 10 9 7 36 36 H 1.09000 * 109.67157 * 353.92027 * 10 9 7 37 37 H 1.08995 * 109.47040 * 186.36365 * 11 10 9 38 38 H 1.09004 * 109.46840 * 66.37409 * 11 10 9 39 39 H 1.08997 * 109.49154 * 300.68362 * 12 11 10 40 40 H 1.08994 * 109.49436 * 180.60098 * 12 11 10 41 41 H 1.08998 * 109.77848 * 308.05620 * 15 13 12 42 42 H 1.09002 * 109.14750 * 188.00588 * 15 13 12 43 43 H 0.97003 * 119.99914 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.60982 * 185.96113 * 25 16 15 45 45 H 1.08998 * 109.75445 * 65.53161 * 25 16 15 46 46 H 1.08998 * 109.45802 * 295.30898 * 26 25 16 47 47 H 1.08994 * 109.45297 * 175.37227 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2556 1.1009 0.0000 4 6 3.5521 0.7093 -0.0058 5 6 3.5780 -0.6888 -0.0042 6 6 2.2678 -1.1181 0.0028 7 6 1.8124 -2.5124 0.0057 8 8 0.7218 -2.7972 -0.4530 9 7 2.6017 -3.4781 0.5164 10 6 3.8548 -3.1425 1.2100 11 6 5.0147 -3.9202 0.5816 12 6 4.6788 -5.4140 0.5653 13 6 3.4180 -5.6402 -0.2690 14 1 3.5874 -5.2428 -1.2698 15 6 3.1325 -7.1219 -0.3729 16 7 2.7392 -7.6353 0.9459 17 6 3.3756 -8.7163 1.4952 18 1 3.5644 -8.7492 2.5581 19 6 3.7781 -9.7699 0.6859 20 7 4.5209 -10.7356 1.1837 21 14 3.2654 -9.8168 -1.1098 22 1 4.2467 -9.0565 -1.9248 23 1 3.2218 -11.2263 -1.5753 24 1 1.9203 -9.2052 -1.2567 25 6 1.6470 -6.9617 1.6625 26 6 1.9804 -5.4716 1.7727 27 6 2.2428 -4.8999 0.3761 28 1 1.3515 -5.0015 -0.2431 29 1 -0.3634 -0.0998 1.0228 30 1 -0.3633 0.9357 -0.4249 31 1 -0.3632 -0.8357 -0.5979 32 1 1.9082 2.1236 -0.0004 33 1 4.4132 1.3611 -0.0105 34 1 4.4583 -1.3144 -0.0073 35 1 3.7602 -3.4150 2.2612 36 1 4.0453 -2.0726 1.1263 37 1 5.9200 -3.7579 1.1665 38 1 5.1745 -3.5725 -0.4390 39 1 4.5071 -5.7594 1.5847 40 1 5.5087 -5.9687 0.1278 41 1 4.0243 -7.6460 -0.7166 42 1 2.3205 -7.2806 -1.0825 43 1 4.8024 -11.4716 0.6181 44 1 1.5460 -7.3888 2.6603 45 1 0.7135 -7.0883 1.1143 46 1 2.8693 -5.3430 2.3904 47 1 1.1424 -4.9448 2.2290 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021523385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:19 Heat of formation + Delta-G solvation = 58.804334 kcal Electronic energy + Delta-G solvation = -28236.713923 eV Core-core repulsion = 24614.636901 eV Total energy + Delta-G solvation = -3622.077022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.66559 -40.07152 -37.99069 -35.86522 -33.33578 -32.67267 -32.45335 -30.80033 -30.20342 -29.08646 -26.78647 -25.64495 -25.14543 -22.98980 -22.33085 -21.83383 -21.22644 -20.73138 -19.20938 -18.03723 -17.35259 -16.73764 -16.46496 -15.60711 -15.48942 -15.20747 -14.83252 -14.68591 -14.15379 -13.93739 -13.86043 -13.57740 -13.43247 -13.16763 -12.87838 -12.83698 -12.52574 -12.38225 -12.33663 -12.23091 -12.01333 -11.81464 -11.63803 -10.96733 -10.73405 -10.59922 -10.53993 -10.36060 -10.10110 -9.94237 -9.75320 -9.57464 -9.49705 -8.86532 -8.63793 -8.52145 -8.21330 -6.81674 -5.94033 -3.43396 1.41485 2.45647 2.57657 3.23483 3.28036 3.31458 3.47831 3.50480 4.48402 4.52037 4.59323 4.80005 4.91188 5.00327 5.02877 5.11717 5.14635 5.20127 5.23552 5.26702 5.39889 5.41101 5.44541 5.65286 5.67286 5.76631 5.85966 5.89322 5.99096 6.07093 6.08252 6.16461 6.25257 6.31570 6.34453 6.42185 6.56628 6.61187 6.66119 6.70467 6.78944 6.81841 6.83618 6.97791 7.02727 7.53950 8.06498 8.20551 8.36882 8.94617 9.70971 10.13573 11.21688 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026254 B = 0.003713 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.238712 B = 7539.014931 C = 7879.131658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.413 5.413 3 C 0.006 3.994 4 C -0.207 4.207 5 C -0.155 4.155 6 C -0.040 4.040 7 C 0.586 3.414 8 O -0.554 6.554 9 N -0.589 5.589 10 C 0.074 3.926 11 C -0.135 4.135 12 C -0.107 4.107 13 C -0.108 4.108 14 H 0.060 0.940 15 C 0.129 3.871 16 N -0.604 5.604 17 C -0.259 4.259 18 H 0.082 0.918 19 C 0.029 3.971 20 N -0.915 5.915 21 Si 0.892 3.108 22 H -0.287 1.287 23 H -0.304 1.304 24 H -0.268 1.268 25 C 0.151 3.849 26 C -0.141 4.141 27 C 0.158 3.842 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.167 0.833 33 H 0.142 0.858 34 H 0.157 0.843 35 H 0.067 0.933 36 H 0.112 0.888 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.026 0.974 43 H 0.263 0.737 44 H 0.067 0.933 45 H 0.024 0.976 46 H 0.069 0.931 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.659 23.815 -1.210 23.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.086 5.086 3 C -0.128 4.128 4 C -0.231 4.231 5 C -0.181 4.181 6 C -0.155 4.155 7 C 0.375 3.625 8 O -0.434 6.434 9 N -0.320 5.320 10 C -0.048 4.048 11 C -0.173 4.173 12 C -0.145 4.145 13 C -0.129 4.129 14 H 0.078 0.922 15 C 0.003 3.997 16 N -0.328 5.328 17 C -0.388 4.388 18 H 0.100 0.900 19 C -0.171 4.171 20 N -0.557 5.557 21 Si 0.723 3.277 22 H -0.215 1.215 23 H -0.233 1.233 24 H -0.193 1.193 25 C 0.025 3.975 26 C -0.181 4.181 27 C 0.056 3.944 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.121 0.879 32 H 0.184 0.816 33 H 0.160 0.840 34 H 0.174 0.826 35 H 0.086 0.914 36 H 0.129 0.871 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.042 0.958 46 H 0.088 0.912 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.569 23.447 -1.450 23.761 hybrid contribution -0.068 -0.003 -1.069 1.071 sum -3.637 23.444 -2.519 23.858 Atomic orbital electron populations 1.22271 0.76290 1.05142 1.04064 1.43870 1.06741 1.05043 1.52920 1.21987 0.90774 0.91401 1.08681 1.20848 0.95977 0.95036 1.11275 1.21617 0.94823 0.95304 1.06347 1.20185 0.90573 0.87647 1.17048 1.17028 0.84084 0.83468 0.77902 1.90762 1.21137 1.83238 1.48273 1.48156 1.22618 1.06353 1.54864 1.22553 0.83409 1.02453 0.96375 1.21950 0.97307 0.97009 1.01014 1.21496 0.96954 0.93784 1.02254 1.21552 0.94957 0.98014 0.98360 0.92165 1.21080 0.98769 0.90983 0.88858 1.44275 1.37021 1.33834 1.17692 1.18841 1.32106 0.93201 0.94662 0.90007 1.25491 0.98389 0.94985 0.98190 1.69741 1.37845 1.12048 1.36092 0.86844 0.79544 0.75419 0.85852 1.21457 1.23278 1.19314 1.20900 0.90236 0.89353 0.97045 1.22390 1.01343 0.98570 0.95824 1.21273 0.98133 0.77079 0.97870 0.88773 0.90781 0.89748 0.87872 0.81610 0.84026 0.82579 0.91441 0.87105 0.90828 0.92022 0.90096 0.91797 0.90635 0.95617 0.92727 0.91469 0.95778 0.91231 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.57 10.74 59.85 0.64 1.21 16 2 N -0.41 -4.63 3.16 -120.24 -0.38 -5.01 16 3 C 0.01 0.06 11.37 -16.91 -0.19 -0.14 16 4 C -0.21 -1.97 10.81 -39.98 -0.43 -2.40 16 5 C -0.16 -1.74 8.61 -39.12 -0.34 -2.07 16 6 C -0.04 -0.54 6.50 -81.98 -0.53 -1.07 16 7 C 0.59 9.20 7.53 -12.86 -0.10 9.10 16 8 O -0.55 -10.14 14.57 5.19 0.08 -10.07 16 9 N -0.59 -8.76 2.69 -166.28 -0.45 -9.20 16 10 C 0.07 0.90 5.29 -3.64 -0.02 0.88 16 11 C -0.13 -1.66 5.89 -26.60 -0.16 -1.81 16 12 C -0.11 -1.74 4.82 -26.74 -0.13 -1.87 16 13 C -0.11 -1.91 2.39 -91.50 -0.22 -2.13 16 14 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 15 C 0.13 2.77 3.47 -4.71 -0.02 2.75 16 16 N -0.60 -13.95 2.33 -173.53 -0.40 -14.35 16 17 C -0.26 -7.06 10.04 -15.06 -0.15 -7.21 16 18 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 19 C 0.03 0.82 5.39 -17.43 -0.09 0.73 16 20 N -0.91 -27.77 13.97 55.49 0.78 -27.00 16 21 Si 0.89 22.51 24.30 -169.99 -4.13 18.38 16 22 H -0.29 -6.97 6.60 56.52 0.37 -6.59 16 23 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 24 H -0.27 -6.68 6.33 56.52 0.36 -6.32 16 25 C 0.15 2.98 6.51 -3.73 -0.02 2.96 16 26 C -0.14 -2.39 5.05 -26.60 -0.13 -2.52 16 27 C 0.16 2.68 2.62 -67.33 -0.18 2.51 16 28 H 0.09 1.77 7.11 -51.93 -0.37 1.40 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 31 H 0.10 1.15 6.45 -51.93 -0.33 0.82 16 32 H 0.17 0.93 8.06 -52.48 -0.42 0.51 16 33 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 34 H 0.16 1.55 5.83 -52.49 -0.31 1.24 16 35 H 0.07 0.83 7.30 -51.93 -0.38 0.45 16 36 H 0.11 1.17 3.20 -51.93 -0.17 1.01 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 1.46 6.19 -51.93 -0.32 1.14 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.08 1.75 4.84 -51.93 -0.25 1.50 16 42 H 0.03 0.57 6.68 -51.93 -0.35 0.22 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.07 1.32 7.94 -51.93 -0.41 0.91 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.07 1.17 5.42 -51.93 -0.28 0.89 16 47 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 346.63 15.07 5.22 5.22 Total: -1.00 -32.46 346.63 -8.38 -40.84 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -7.03 Total: 2.26 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -2.07 Total: -1.08 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.46 Total: -55.56 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.13 Total: 18.38 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.46 -8.38 -40.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021523385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.645 kcal (2) G-P(sol) polarization free energy of solvation -32.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds