Wall clock time and date at job start Tue Mar 31 2020 11:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35533 * 125.67949 * 2 1 4 4 C 1.35442 * 108.87264 * 180.25893 * 3 2 1 5 5 C 1.39837 * 107.86546 * 359.76799 * 4 3 2 6 6 C 1.37645 * 125.67459 * 179.85856 * 2 1 3 7 7 C 1.46672 * 126.23814 * 0.02562 * 6 2 1 8 8 O 1.21700 * 119.99936 * 25.81200 * 7 6 2 9 9 N 1.34773 * 120.00401 * 205.81672 * 7 6 2 10 10 C 1.47103 * 120.93756 * 6.87386 * 9 7 6 11 11 C 1.53139 * 109.62652 * 233.61037 * 10 9 7 12 12 C 1.53121 * 109.48727 * 306.36945 * 11 10 9 13 13 C 1.52862 * 109.33974 * 60.64005 * 12 11 10 14 14 H 1.09010 * 108.60143 * 57.11561 * 13 12 11 15 15 C 1.51250 * 109.76130 * 176.02601 * 13 12 11 16 16 N 1.46891 * 109.34732 * 68.22595 * 15 13 12 17 17 C 1.36937 * 120.76861 * 232.94461 * 16 15 13 18 18 H 1.08002 * 120.00214 * 142.66141 * 17 16 15 19 19 C 1.38814 * 120.00248 * 322.65501 * 17 16 15 20 20 N 1.31613 * 120.00242 * 172.29950 * 19 17 16 21 21 Si 1.86806 * 119.99506 * 352.30038 * 19 17 16 22 22 H 1.48495 * 109.47109 * 86.93198 * 21 19 17 23 23 H 1.48501 * 109.46717 * 206.92868 * 21 19 17 24 24 H 1.48496 * 109.47166 * 326.92756 * 21 19 17 25 25 C 1.46971 * 118.46052 * 52.91931 * 16 15 13 26 26 C 1.53099 * 108.62382 * 305.70095 * 25 16 15 27 27 C 1.47313 * 120.85157 * 187.84073 * 9 7 6 28 28 H 1.09001 * 110.07525 * 4.90006 * 27 9 7 29 29 H 1.09000 * 109.47266 * 264.42486 * 1 2 3 30 30 H 1.08999 * 109.46987 * 24.42222 * 1 2 3 31 31 H 1.08991 * 109.46773 * 144.41875 * 1 2 3 32 32 H 1.08003 * 125.56023 * 359.97438 * 3 2 1 33 33 H 1.08000 * 126.07044 * 179.78607 * 4 3 2 34 34 H 1.07997 * 126.45681 * 180.02562 * 5 4 3 35 35 H 1.09000 * 108.89493 * 113.78437 * 10 9 7 36 36 H 1.09000 * 109.67157 * 353.92027 * 10 9 7 37 37 H 1.08995 * 109.47040 * 186.36365 * 11 10 9 38 38 H 1.09004 * 109.46840 * 66.37409 * 11 10 9 39 39 H 1.08997 * 109.49154 * 300.68362 * 12 11 10 40 40 H 1.08994 * 109.49436 * 180.60098 * 12 11 10 41 41 H 1.08998 * 109.77848 * 308.05620 * 15 13 12 42 42 H 1.09002 * 109.14750 * 188.00588 * 15 13 12 43 43 H 0.97003 * 119.99914 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.60982 * 185.96113 * 25 16 15 45 45 H 1.08998 * 109.75445 * 65.53161 * 25 16 15 46 46 H 1.08998 * 109.45802 * 295.30898 * 26 25 16 47 47 H 1.08994 * 109.45297 * 175.37227 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2556 1.1009 0.0000 4 6 3.5521 0.7093 -0.0058 5 6 3.5780 -0.6888 -0.0042 6 6 2.2678 -1.1181 0.0028 7 6 1.8124 -2.5124 0.0057 8 8 0.7218 -2.7972 -0.4530 9 7 2.6017 -3.4781 0.5164 10 6 3.8548 -3.1425 1.2100 11 6 5.0147 -3.9202 0.5816 12 6 4.6788 -5.4140 0.5653 13 6 3.4180 -5.6402 -0.2690 14 1 3.5874 -5.2428 -1.2698 15 6 3.1325 -7.1219 -0.3729 16 7 2.7392 -7.6353 0.9459 17 6 3.3756 -8.7163 1.4952 18 1 3.5644 -8.7492 2.5581 19 6 3.7781 -9.7699 0.6859 20 7 4.5209 -10.7356 1.1837 21 14 3.2654 -9.8168 -1.1098 22 1 4.2467 -9.0565 -1.9248 23 1 3.2218 -11.2263 -1.5753 24 1 1.9203 -9.2052 -1.2567 25 6 1.6470 -6.9617 1.6625 26 6 1.9804 -5.4716 1.7727 27 6 2.2428 -4.8999 0.3761 28 1 1.3515 -5.0015 -0.2431 29 1 -0.3634 -0.0998 1.0228 30 1 -0.3633 0.9357 -0.4249 31 1 -0.3632 -0.8357 -0.5979 32 1 1.9082 2.1236 -0.0004 33 1 4.4132 1.3611 -0.0105 34 1 4.4583 -1.3144 -0.0073 35 1 3.7602 -3.4150 2.2612 36 1 4.0453 -2.0726 1.1263 37 1 5.9200 -3.7579 1.1665 38 1 5.1745 -3.5725 -0.4390 39 1 4.5071 -5.7594 1.5847 40 1 5.5087 -5.9687 0.1278 41 1 4.0243 -7.6460 -0.7166 42 1 2.3205 -7.2806 -1.0825 43 1 4.8024 -11.4716 0.6181 44 1 1.5460 -7.3888 2.6603 45 1 0.7135 -7.0883 1.1143 46 1 2.8693 -5.3430 2.3904 47 1 1.1424 -4.9448 2.2290 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021523385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:18 Heat of formation + Delta-G solvation = 39.172293 kcal Electronic energy + Delta-G solvation = -28237.565232 eV Core-core repulsion = 24614.636901 eV Total energy + Delta-G solvation = -3622.928331 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.54465 -41.28443 -39.32507 -37.32164 -34.67123 -34.11413 -33.64924 -32.44840 -31.62931 -30.11010 -27.61344 -27.09817 -26.58547 -24.56786 -23.66967 -23.08388 -22.52127 -21.66566 -20.23604 -19.55057 -18.57424 -18.23720 -17.62592 -17.23780 -16.49824 -16.39031 -16.18459 -15.93713 -15.54241 -15.39351 -15.27060 -14.75609 -14.51547 -14.38166 -14.23509 -14.05390 -13.94227 -13.78036 -13.51686 -13.23716 -13.16596 -13.03356 -12.86078 -12.66132 -12.40581 -12.18831 -11.92235 -11.89121 -11.70498 -11.53791 -11.32197 -11.11791 -10.93485 -10.71622 -9.70199 -9.62079 -9.09263 -8.78972 -8.16145 -5.61800 0.50156 1.27791 1.39165 1.47370 1.57112 1.83340 2.24115 2.29141 2.39699 3.12725 3.25522 3.46151 3.71856 3.83743 3.93235 3.97611 4.06935 4.14812 4.22759 4.25986 4.34530 4.36923 4.46631 4.51445 4.55977 4.58089 4.64842 4.71361 4.74623 4.82760 4.84796 4.86031 4.94826 5.03076 5.06342 5.13567 5.19195 5.27349 5.28296 5.35912 5.52382 5.59895 5.86745 5.94210 6.01653 6.16289 6.33711 6.42535 6.92084 7.06318 7.58673 8.05455 9.03200 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026254 B = 0.003713 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.238712 B = 7539.014931 C = 7879.131658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.422 5.422 3 C 0.022 3.978 4 C -0.216 4.216 5 C -0.149 4.149 6 C -0.083 4.083 7 C 0.582 3.418 8 O -0.592 6.592 9 N -0.589 5.589 10 C 0.075 3.925 11 C -0.124 4.124 12 C -0.104 4.104 13 C -0.102 4.102 14 H 0.069 0.931 15 C 0.128 3.872 16 N -0.613 5.613 17 C -0.242 4.242 18 H 0.052 0.948 19 C -0.024 4.024 20 N -0.959 5.959 21 Si 0.948 3.052 22 H -0.272 1.272 23 H -0.311 1.311 24 H -0.264 1.264 25 C 0.148 3.852 26 C -0.126 4.126 27 C 0.165 3.835 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.119 0.881 31 H 0.074 0.926 32 H 0.205 0.795 33 H 0.168 0.832 34 H 0.168 0.832 35 H 0.069 0.931 36 H 0.134 0.866 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.022 0.978 43 H 0.262 0.738 44 H 0.064 0.936 45 H 0.027 0.973 46 H 0.072 0.928 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.260 27.916 -1.772 28.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.095 5.095 3 C -0.113 4.113 4 C -0.240 4.240 5 C -0.175 4.175 6 C -0.196 4.196 7 C 0.373 3.627 8 O -0.475 6.475 9 N -0.319 5.319 10 C -0.046 4.046 11 C -0.162 4.162 12 C -0.142 4.142 13 C -0.123 4.123 14 H 0.088 0.912 15 C 0.002 3.998 16 N -0.338 5.338 17 C -0.371 4.371 18 H 0.070 0.930 19 C -0.220 4.220 20 N -0.605 5.605 21 Si 0.777 3.223 22 H -0.199 1.199 23 H -0.240 1.240 24 H -0.189 1.189 25 C 0.022 3.978 26 C -0.166 4.166 27 C 0.062 3.938 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.137 0.863 31 H 0.093 0.907 32 H 0.221 0.779 33 H 0.185 0.815 34 H 0.185 0.815 35 H 0.087 0.913 36 H 0.151 0.849 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.039 0.961 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.045 0.955 46 H 0.090 0.910 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.171 27.596 -2.007 27.850 hybrid contribution -0.221 -1.157 -0.827 1.439 sum -3.392 26.439 -2.835 26.806 Atomic orbital electron populations 1.22339 0.75589 1.05805 1.04130 1.44117 1.07449 1.05084 1.52828 1.22715 0.90558 0.92338 1.05733 1.21230 0.97178 0.94499 1.11047 1.21856 0.94234 0.96498 1.04892 1.19964 0.91830 0.86867 1.20933 1.17452 0.83508 0.84675 0.77029 1.90737 1.22814 1.83990 1.49913 1.48100 1.23547 1.05142 1.55069 1.22742 0.82022 1.03769 0.96037 1.21898 0.98328 0.93679 1.02290 1.21430 0.95655 0.96759 1.00354 1.21419 0.96130 0.95289 0.99438 0.91218 1.21047 0.97670 0.93399 0.87640 1.44333 1.37848 1.33292 1.18359 1.18730 1.30820 0.94132 0.93466 0.93046 1.26063 0.99009 0.94936 1.01959 1.69868 1.39946 1.13137 1.37569 0.85936 0.79571 0.74949 0.81805 1.19873 1.24042 1.18917 1.21014 0.89326 0.90984 0.96464 1.22193 1.01910 0.96322 0.96166 1.20953 0.96946 0.78748 0.97132 0.90768 0.90335 0.86288 0.90684 0.77863 0.81463 0.81521 0.91281 0.84862 0.88205 0.90975 0.92182 0.92913 0.92441 0.96055 0.92912 0.91789 0.95477 0.90959 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.00 10.74 127.77 1.37 2.38 16 2 N -0.42 -8.31 3.16 -534.32 -1.69 -10.00 16 3 C 0.02 0.30 11.37 83.47 0.95 1.25 16 4 C -0.22 -3.17 10.81 22.01 0.24 -2.93 16 5 C -0.15 -2.82 8.61 22.57 0.19 -2.63 16 6 C -0.08 -2.02 6.50 40.35 0.26 -1.76 16 7 C 0.58 17.76 7.53 86.45 0.65 18.41 16 8 O -0.59 -21.85 14.57 -4.35 -0.06 -21.92 16 9 N -0.59 -16.71 2.69 -798.22 -2.15 -18.85 16 10 C 0.08 1.64 5.29 86.31 0.46 2.09 16 11 C -0.12 -2.71 5.89 30.68 0.18 -2.53 16 12 C -0.10 -3.28 4.82 30.59 0.15 -3.13 16 13 C -0.10 -3.54 2.39 -11.36 -0.03 -3.57 16 14 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 15 C 0.13 5.49 3.47 85.73 0.30 5.79 16 16 N -0.61 -28.73 2.33 -702.93 -1.64 -30.36 16 17 C -0.24 -13.54 10.04 84.03 0.84 -12.69 16 18 H 0.05 3.16 8.06 -2.91 -0.02 3.13 16 19 C -0.02 -1.43 5.39 84.86 0.46 -0.97 16 20 N -0.96 -60.10 13.97 21.65 0.30 -59.80 16 21 Si 0.95 47.39 24.30 68.60 1.67 49.06 16 22 H -0.27 -12.83 6.60 99.48 0.66 -12.17 16 23 H -0.31 -15.84 7.11 99.48 0.71 -15.13 16 24 H -0.26 -12.90 6.33 99.48 0.63 -12.27 16 25 C 0.15 5.87 6.51 86.32 0.56 6.43 16 26 C -0.13 -4.20 5.05 30.68 0.15 -4.04 16 27 C 0.17 5.51 2.62 44.94 0.12 5.63 16 28 H 0.07 2.80 7.11 -2.39 -0.02 2.78 16 29 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.12 1.01 8.12 -2.39 -0.02 0.99 16 31 H 0.07 1.67 6.45 -2.39 -0.02 1.65 16 32 H 0.20 1.12 8.06 -2.91 -0.02 1.09 16 33 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 34 H 0.17 2.65 5.83 -2.91 -0.02 2.63 16 35 H 0.07 1.51 7.30 -2.39 -0.02 1.50 16 36 H 0.13 2.37 3.20 -2.39 -0.01 2.36 16 37 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.06 2.14 6.19 -2.39 -0.01 2.12 16 40 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.06 2.67 4.84 -2.39 -0.01 2.66 16 42 H 0.02 0.94 6.68 -2.39 -0.02 0.93 16 43 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 44 H 0.06 2.55 7.94 -2.39 -0.02 2.53 16 45 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.07 2.38 5.42 -2.39 -0.01 2.37 16 47 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -73.24 346.63 4.14 -69.10 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.85 Total: 15.05 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 6.86 Total: 7.73 kcal Atomic # 7 Polarization: -113.85 SS G_CDS: -5.17 Total: -119.02 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.06 Total: -21.92 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 1.67 Total: 49.06 kcal Total: -73.24 4.14 -69.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021523385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.269 kcal (2) G-P(sol) polarization free energy of solvation -73.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds