Wall clock time and date at job start Tue Mar 31 2020 11:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35532 * 125.67497 * 2 1 4 4 C 1.35450 * 108.87196 * 180.02562 * 3 2 1 5 5 C 1.39845 * 107.86366 * 359.74299 * 4 3 2 6 6 C 1.37647 * 125.67631 * 180.02562 * 2 1 3 7 7 C 1.46673 * 126.23739 * 359.97438 * 6 2 1 8 8 O 1.21692 * 120.00116 * 333.65115 * 7 6 2 9 9 N 1.34775 * 120.00046 * 153.64421 * 7 6 2 10 10 C 1.47067 * 120.84735 * 352.82126 * 9 7 6 11 11 C 1.53124 * 109.05110 * 126.55810 * 10 9 7 12 12 C 1.53152 * 109.62097 * 53.98933 * 11 10 9 13 13 C 1.52813 * 109.26551 * 299.15981 * 12 11 10 14 14 H 1.09002 * 109.47007 * 301.99745 * 13 12 11 15 15 C 1.53057 * 110.34198 * 181.45512 * 13 12 11 16 16 N 1.47066 * 108.37426 * 184.54323 * 15 13 12 17 17 C 1.36938 * 120.47648 * 233.32353 * 16 15 13 18 18 H 1.08000 * 119.99885 * 27.39792 * 17 16 15 19 19 C 1.38811 * 120.00185 * 207.40152 * 17 16 15 20 20 N 1.31618 * 120.00172 * 17.19853 * 19 17 16 21 21 Si 1.86800 * 120.00169 * 197.20780 * 19 17 16 22 22 H 1.48495 * 109.47333 * 89.99589 * 21 19 17 23 23 H 1.48501 * 109.47172 * 210.00092 * 21 19 17 24 24 H 1.48505 * 109.46823 * 329.99781 * 21 19 17 25 25 C 1.46948 * 119.00422 * 53.29892 * 16 15 13 26 26 C 1.53310 * 109.12352 * 307.36829 * 25 16 15 27 27 C 1.46720 * 120.84202 * 172.79830 * 9 7 6 28 28 H 1.08995 * 109.52428 * 114.81929 * 27 9 7 29 29 H 1.08996 * 109.47438 * 272.71284 * 1 2 3 30 30 H 1.09001 * 109.47322 * 32.71546 * 1 2 3 31 31 H 1.08999 * 109.47035 * 152.71272 * 1 2 3 32 32 H 1.08001 * 125.56544 * 0.03918 * 3 2 1 33 33 H 1.07998 * 126.07337 * 179.97438 * 4 3 2 34 34 H 1.07994 * 126.45812 * 180.26693 * 5 4 3 35 35 H 1.09003 * 109.53785 * 6.68535 * 10 9 7 36 36 H 1.08999 * 109.61229 * 246.47199 * 10 9 7 37 37 H 1.09001 * 109.44780 * 293.95103 * 11 10 9 38 38 H 1.08996 * 109.45159 * 174.03609 * 11 10 9 39 39 H 1.09001 * 109.50438 * 179.21555 * 12 11 10 40 40 H 1.09009 * 109.50044 * 59.09444 * 12 11 10 41 41 H 1.09002 * 109.69643 * 304.27705 * 15 13 12 42 42 H 1.09004 * 109.69067 * 64.81596 * 15 13 12 43 43 H 0.96997 * 120.00189 * 179.97438 * 20 19 17 44 44 H 1.08995 * 109.52010 * 187.47607 * 25 16 15 45 45 H 1.09003 * 109.52315 * 67.26755 * 25 16 15 46 46 H 1.08995 * 109.55712 * 294.27558 * 26 25 16 47 47 H 1.08998 * 109.56044 * 173.94725 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7094 -0.0006 5 6 3.5780 -0.6888 0.0050 6 6 2.2678 -1.1181 -0.0005 7 6 1.8125 -2.5124 -0.0006 8 8 0.7260 -2.7977 0.4675 9 7 2.5972 -3.4776 -0.5192 10 6 3.8399 -3.1387 -1.2290 11 6 5.0000 -3.9211 -0.6070 12 6 4.6644 -5.4154 -0.5946 13 6 3.4092 -5.6432 0.2467 14 1 3.5757 -5.2682 1.2566 15 6 3.0718 -7.1350 0.3056 16 7 1.8019 -7.2948 1.0300 17 6 1.7153 -8.1439 2.1008 18 1 2.5922 -8.3555 2.6946 19 6 0.5003 -8.7328 2.4231 20 7 -0.4734 -8.7597 1.5379 21 14 0.2470 -9.4869 4.1132 22 1 -0.2891 -8.4574 5.0394 23 1 -0.7161 -10.6129 4.0136 24 1 1.5450 -9.9902 4.6303 25 6 0.6281 -6.5292 0.5878 26 6 1.0003 -5.0445 0.5011 27 6 2.2338 -4.8931 -0.3896 28 1 2.0279 -5.3081 -1.3762 29 1 -0.3634 0.0486 1.0265 30 1 -0.3634 0.8646 -0.5554 31 1 -0.3633 -0.9133 -0.4711 32 1 1.9081 2.1236 0.0006 33 1 4.4132 1.3612 -0.0011 34 1 4.4583 -1.3143 0.0101 35 1 4.0314 -2.0695 -1.1387 36 1 3.7440 -3.4044 -2.2818 37 1 5.1632 -3.5774 0.4145 38 1 5.9041 -3.7571 -1.1934 39 1 5.4971 -5.9718 -0.1643 40 1 4.4860 -5.7567 -1.6143 41 1 2.9698 -7.5288 -0.7057 42 1 3.8635 -7.6702 0.8299 43 1 -1.3223 -9.1716 1.7630 44 1 -0.1831 -6.6604 1.3038 45 1 0.3107 -6.8833 -0.3931 46 1 1.2218 -4.6651 1.4986 47 1 0.1695 -4.4845 0.0720 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021523386.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:23 Heat of formation + Delta-G solvation = 67.857379 kcal Electronic energy + Delta-G solvation = -28179.216316 eV Core-core repulsion = 24557.531863 eV Total energy + Delta-G solvation = -3621.684452 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.58512 -39.92659 -37.49929 -35.89124 -33.40522 -32.59038 -32.45710 -30.44379 -29.45489 -28.82040 -26.66694 -25.47970 -25.00199 -22.60408 -22.48162 -21.72848 -20.73499 -19.94565 -19.29928 -18.82231 -17.16294 -16.59725 -16.05480 -15.61160 -15.31527 -14.85591 -14.61506 -14.52937 -14.07632 -13.95098 -13.63895 -13.44650 -13.23232 -12.91822 -12.71725 -12.57500 -12.41107 -12.26834 -12.25497 -12.08092 -11.84903 -11.23764 -11.14281 -10.85621 -10.82993 -10.71680 -10.43068 -10.27272 -10.17358 -9.87749 -9.86737 -9.36165 -8.79505 -8.69388 -8.37550 -8.31068 -8.12899 -6.59346 -5.70900 -3.13027 1.54265 2.57119 2.66006 3.35865 3.41393 3.43628 3.49892 3.50613 4.54940 4.59435 4.69174 4.88667 4.92615 5.03566 5.11144 5.13952 5.28823 5.31269 5.35365 5.46232 5.48214 5.52017 5.61064 5.69168 5.77911 5.91787 5.96059 5.98551 6.05414 6.13211 6.18796 6.28839 6.43399 6.45259 6.55090 6.68116 6.75666 6.81113 6.89416 7.00295 7.04602 7.11217 7.23632 7.55148 7.68072 7.78915 7.88050 8.43836 8.52637 9.28916 9.92520 10.48210 11.37106 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017700 B = 0.003971 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.562424 B = 7048.996202 C = 8015.651129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.412 5.412 3 C 0.003 3.997 4 C -0.207 4.207 5 C -0.161 4.161 6 C -0.037 4.037 7 C 0.583 3.417 8 O -0.531 6.531 9 N -0.593 5.593 10 C 0.074 3.926 11 C -0.133 4.133 12 C -0.114 4.114 13 C -0.114 4.114 14 H 0.070 0.930 15 C 0.156 3.844 16 N -0.593 5.593 17 C -0.252 4.252 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.901 3.099 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.167 3.833 26 C -0.131 4.131 27 C 0.161 3.839 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.166 0.834 33 H 0.140 0.860 34 H 0.154 0.846 35 H 0.112 0.888 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.018 0.982 42 H 0.055 0.945 43 H 0.253 0.747 44 H 0.088 0.912 45 H 0.015 0.985 46 H 0.057 0.943 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.566 19.193 -7.536 22.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.085 5.085 3 C -0.131 4.131 4 C -0.231 4.231 5 C -0.186 4.186 6 C -0.152 4.152 7 C 0.371 3.629 8 O -0.410 6.410 9 N -0.325 5.325 10 C -0.048 4.048 11 C -0.171 4.171 12 C -0.152 4.152 13 C -0.135 4.135 14 H 0.088 0.912 15 C 0.029 3.971 16 N -0.316 5.316 17 C -0.382 4.382 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.547 5.547 21 Si 0.731 3.269 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.205 1.205 25 C 0.041 3.959 26 C -0.170 4.170 27 C 0.059 3.941 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.183 0.817 33 H 0.158 0.842 34 H 0.172 0.828 35 H 0.130 0.870 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.036 0.964 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.106 0.894 45 H 0.033 0.967 46 H 0.076 0.924 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.393 18.898 -7.272 21.557 hybrid contribution -0.057 -0.323 0.862 0.923 sum 7.336 18.575 -6.409 20.975 Atomic orbital electron populations 1.22170 0.76187 1.04655 1.04011 1.43876 1.06773 1.05066 1.52781 1.21947 0.90753 0.91404 1.09044 1.20825 0.95920 0.95028 1.11372 1.21552 0.94814 0.95222 1.07035 1.20425 0.90542 0.87997 1.16233 1.17069 0.84307 0.83171 0.78358 1.90866 1.21226 1.82066 1.46800 1.47953 1.23094 1.06721 1.54730 1.22503 0.83865 1.02667 0.95765 1.21896 0.97327 0.96432 1.01459 1.21523 0.98207 0.95024 1.00417 1.22092 0.93216 0.99193 0.98973 0.91159 1.20859 0.89989 0.90975 0.95296 1.44160 1.05743 1.47844 1.33835 1.19195 0.95809 1.19982 1.03184 0.91764 1.25009 0.97962 0.98587 0.98033 1.70039 1.04916 1.47354 1.32351 0.86308 0.77610 0.78420 0.84543 1.21488 1.21807 1.20483 1.20994 0.90711 0.85678 0.98535 1.22724 0.95923 0.99595 0.98737 1.21352 0.96295 0.77168 0.99248 0.91649 0.90265 0.90093 0.88667 0.81702 0.84171 0.82834 0.87026 0.91818 0.91634 0.91067 0.91749 0.92037 0.96407 0.92602 0.93706 0.89354 0.96714 0.92414 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 10.52 59.85 0.63 1.34 16 2 N -0.41 -4.98 3.16 -120.24 -0.38 -5.36 16 3 C 0.00 0.03 11.38 -16.91 -0.19 -0.16 16 4 C -0.21 -2.10 10.81 -39.98 -0.43 -2.53 16 5 C -0.16 -1.89 8.59 -39.11 -0.34 -2.23 16 6 C -0.04 -0.53 6.48 -81.98 -0.53 -1.06 16 7 C 0.58 9.79 7.30 -12.86 -0.09 9.70 16 8 O -0.53 -10.46 11.13 5.20 0.06 -10.40 16 9 N -0.59 -9.28 2.97 -166.85 -0.50 -9.78 16 10 C 0.07 0.87 5.80 -3.67 -0.02 0.85 16 11 C -0.13 -1.46 5.87 -26.59 -0.16 -1.62 16 12 C -0.11 -1.51 5.24 -26.75 -0.14 -1.65 16 13 C -0.11 -2.01 2.21 -90.54 -0.20 -2.21 16 14 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 15 C 0.16 3.30 5.86 -3.70 -0.02 3.27 16 16 N -0.59 -15.36 3.01 -172.20 -0.52 -15.88 16 17 C -0.25 -7.13 9.58 -15.06 -0.14 -7.27 16 18 H 0.06 1.78 7.88 -52.49 -0.41 1.37 16 19 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 20 N -0.90 -26.97 11.17 55.49 0.62 -26.35 16 21 Si 0.90 22.38 29.59 -169.99 -5.03 17.35 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.17 4.24 5.27 -3.64 -0.02 4.22 16 26 C -0.13 -2.85 3.82 -26.62 -0.10 -2.95 16 27 C 0.16 2.94 2.64 -67.72 -0.18 2.76 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.09 1.13 6.92 -51.93 -0.36 0.77 16 32 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.15 1.58 5.88 -52.49 -0.31 1.27 16 35 H 0.11 1.17 3.21 -51.93 -0.17 1.00 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 43 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.09 2.53 6.04 -51.93 -0.31 2.22 16 45 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 1.38 7.52 -51.93 -0.39 0.99 16 47 H 0.08 1.84 6.05 -51.93 -0.31 1.53 16 LS Contribution 354.04 15.07 5.34 5.34 Total: -1.00 -33.05 354.04 -9.75 -42.80 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -7.31 Total: 1.83 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -2.02 Total: 0.45 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -0.77 Total: -57.37 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.06 Total: -10.40 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.03 Total: 17.35 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.05 -9.75 -42.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021523386.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.653 kcal (2) G-P(sol) polarization free energy of solvation -33.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds