Wall clock time and date at job start Tue Mar 31 2020 11:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35532 * 125.67497 * 2 1 4 4 C 1.35450 * 108.87196 * 180.02562 * 3 2 1 5 5 C 1.39845 * 107.86366 * 359.74299 * 4 3 2 6 6 C 1.37647 * 125.67631 * 180.02562 * 2 1 3 7 7 C 1.46673 * 126.23739 * 359.97438 * 6 2 1 8 8 O 1.21692 * 120.00116 * 333.65115 * 7 6 2 9 9 N 1.34775 * 120.00046 * 153.64421 * 7 6 2 10 10 C 1.47067 * 120.84735 * 352.82126 * 9 7 6 11 11 C 1.53124 * 109.05110 * 126.55810 * 10 9 7 12 12 C 1.53152 * 109.62097 * 53.98933 * 11 10 9 13 13 C 1.52813 * 109.26551 * 299.15981 * 12 11 10 14 14 H 1.09002 * 109.47007 * 301.99745 * 13 12 11 15 15 C 1.53057 * 110.34198 * 181.45512 * 13 12 11 16 16 N 1.47066 * 108.37426 * 184.54323 * 15 13 12 17 17 C 1.36938 * 120.47648 * 233.32353 * 16 15 13 18 18 H 1.08000 * 119.99885 * 27.39792 * 17 16 15 19 19 C 1.38811 * 120.00185 * 207.40152 * 17 16 15 20 20 N 1.31618 * 120.00172 * 17.19853 * 19 17 16 21 21 Si 1.86800 * 120.00169 * 197.20780 * 19 17 16 22 22 H 1.48495 * 109.47333 * 89.99589 * 21 19 17 23 23 H 1.48501 * 109.47172 * 210.00092 * 21 19 17 24 24 H 1.48505 * 109.46823 * 329.99781 * 21 19 17 25 25 C 1.46948 * 119.00422 * 53.29892 * 16 15 13 26 26 C 1.53310 * 109.12352 * 307.36829 * 25 16 15 27 27 C 1.46720 * 120.84202 * 172.79830 * 9 7 6 28 28 H 1.08995 * 109.52428 * 114.81929 * 27 9 7 29 29 H 1.08996 * 109.47438 * 272.71284 * 1 2 3 30 30 H 1.09001 * 109.47322 * 32.71546 * 1 2 3 31 31 H 1.08999 * 109.47035 * 152.71272 * 1 2 3 32 32 H 1.08001 * 125.56544 * 0.03918 * 3 2 1 33 33 H 1.07998 * 126.07337 * 179.97438 * 4 3 2 34 34 H 1.07994 * 126.45812 * 180.26693 * 5 4 3 35 35 H 1.09003 * 109.53785 * 6.68535 * 10 9 7 36 36 H 1.08999 * 109.61229 * 246.47199 * 10 9 7 37 37 H 1.09001 * 109.44780 * 293.95103 * 11 10 9 38 38 H 1.08996 * 109.45159 * 174.03609 * 11 10 9 39 39 H 1.09001 * 109.50438 * 179.21555 * 12 11 10 40 40 H 1.09009 * 109.50044 * 59.09444 * 12 11 10 41 41 H 1.09002 * 109.69643 * 304.27705 * 15 13 12 42 42 H 1.09004 * 109.69067 * 64.81596 * 15 13 12 43 43 H 0.96997 * 120.00189 * 179.97438 * 20 19 17 44 44 H 1.08995 * 109.52010 * 187.47607 * 25 16 15 45 45 H 1.09003 * 109.52315 * 67.26755 * 25 16 15 46 46 H 1.08995 * 109.55712 * 294.27558 * 26 25 16 47 47 H 1.08998 * 109.56044 * 173.94725 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7094 -0.0006 5 6 3.5780 -0.6888 0.0050 6 6 2.2678 -1.1181 -0.0005 7 6 1.8125 -2.5124 -0.0006 8 8 0.7260 -2.7977 0.4675 9 7 2.5972 -3.4776 -0.5192 10 6 3.8399 -3.1387 -1.2290 11 6 5.0000 -3.9211 -0.6070 12 6 4.6644 -5.4154 -0.5946 13 6 3.4092 -5.6432 0.2467 14 1 3.5757 -5.2682 1.2566 15 6 3.0718 -7.1350 0.3056 16 7 1.8019 -7.2948 1.0300 17 6 1.7153 -8.1439 2.1008 18 1 2.5922 -8.3555 2.6946 19 6 0.5003 -8.7328 2.4231 20 7 -0.4734 -8.7597 1.5379 21 14 0.2470 -9.4869 4.1132 22 1 -0.2891 -8.4574 5.0394 23 1 -0.7161 -10.6129 4.0136 24 1 1.5450 -9.9902 4.6303 25 6 0.6281 -6.5292 0.5878 26 6 1.0003 -5.0445 0.5011 27 6 2.2338 -4.8931 -0.3896 28 1 2.0279 -5.3081 -1.3762 29 1 -0.3634 0.0486 1.0265 30 1 -0.3634 0.8646 -0.5554 31 1 -0.3633 -0.9133 -0.4711 32 1 1.9081 2.1236 0.0006 33 1 4.4132 1.3612 -0.0011 34 1 4.4583 -1.3143 0.0101 35 1 4.0314 -2.0695 -1.1387 36 1 3.7440 -3.4044 -2.2818 37 1 5.1632 -3.5774 0.4145 38 1 5.9041 -3.7571 -1.1934 39 1 5.4971 -5.9718 -0.1643 40 1 4.4860 -5.7567 -1.6143 41 1 2.9698 -7.5288 -0.7057 42 1 3.8635 -7.6702 0.8299 43 1 -1.3223 -9.1716 1.7630 44 1 -0.1831 -6.6604 1.3038 45 1 0.3107 -6.8833 -0.3931 46 1 1.2218 -4.6651 1.4986 47 1 0.1695 -4.4845 0.0720 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021523386.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:22 Heat of formation + Delta-G solvation = 48.136922 kcal Electronic energy + Delta-G solvation = -28180.071459 eV Core-core repulsion = 24557.531863 eV Total energy + Delta-G solvation = -3622.539595 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.54941 -41.17251 -38.93429 -37.46953 -34.79462 -34.03954 -33.62840 -32.18893 -30.99218 -29.99972 -27.55223 -27.12166 -26.40823 -24.28929 -23.94771 -22.90573 -21.73236 -21.29027 -20.84129 -19.87513 -18.68948 -18.14357 -17.27493 -17.00274 -16.52378 -16.37161 -15.95542 -15.59749 -15.54869 -15.40384 -15.22457 -14.69091 -14.51495 -14.21955 -13.95046 -13.88548 -13.69255 -13.58641 -13.19181 -13.11291 -13.05694 -12.95117 -12.87934 -12.66719 -12.30429 -12.22631 -12.02140 -11.95158 -11.73366 -11.65620 -11.45322 -11.08292 -10.56324 -10.17596 -9.62193 -9.58312 -9.07466 -8.70973 -7.89250 -5.35039 0.54882 1.42076 1.45297 1.53380 1.63011 1.84874 2.27196 2.33084 2.48159 3.25050 3.52419 3.61587 3.83820 3.89615 3.95415 4.01937 4.13712 4.23253 4.28807 4.32569 4.34270 4.48078 4.52301 4.56158 4.61271 4.68289 4.72242 4.81894 4.87984 4.90827 4.94788 5.00475 5.11777 5.16585 5.21419 5.27731 5.31196 5.38042 5.48248 5.53351 5.61090 5.63139 5.72253 5.88947 6.03120 6.35023 6.35762 6.49165 7.10897 7.18747 7.82651 8.34165 9.16847 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017700 B = 0.003971 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.562424 B = 7048.996202 C = 8015.651129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.422 5.422 3 C 0.018 3.982 4 C -0.214 4.214 5 C -0.150 4.150 6 C -0.083 4.083 7 C 0.573 3.427 8 O -0.577 6.577 9 N -0.593 5.593 10 C 0.071 3.929 11 C -0.125 4.125 12 C -0.108 4.108 13 C -0.100 4.100 14 H 0.048 0.952 15 C 0.152 3.848 16 N -0.613 5.613 17 C -0.265 4.265 18 H 0.068 0.932 19 C -0.052 4.052 20 N -0.935 5.935 21 Si 0.967 3.033 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.264 1.264 25 C 0.178 3.822 26 C -0.106 4.106 27 C 0.168 3.832 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.119 0.881 31 H 0.067 0.933 32 H 0.204 0.796 33 H 0.170 0.830 34 H 0.169 0.831 35 H 0.130 0.870 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.021 0.979 42 H 0.060 0.940 43 H 0.249 0.751 44 H 0.048 0.952 45 H -0.004 1.004 46 H 0.029 0.971 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.691 21.860 -8.268 26.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.096 5.096 3 C -0.117 4.117 4 C -0.237 4.237 5 C -0.176 4.176 6 C -0.196 4.196 7 C 0.364 3.636 8 O -0.460 6.460 9 N -0.324 5.324 10 C -0.050 4.050 11 C -0.163 4.163 12 C -0.146 4.146 13 C -0.121 4.121 14 H 0.067 0.933 15 C 0.027 3.973 16 N -0.336 5.336 17 C -0.395 4.395 18 H 0.086 0.914 19 C -0.247 4.247 20 N -0.581 5.581 21 Si 0.795 3.205 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.188 1.188 25 C 0.052 3.948 26 C -0.146 4.146 27 C 0.065 3.935 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.137 0.863 31 H 0.086 0.914 32 H 0.221 0.779 33 H 0.187 0.813 34 H 0.186 0.814 35 H 0.147 0.853 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.130 0.870 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.039 0.961 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.014 0.986 46 H 0.048 0.952 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.586 21.579 -8.030 25.342 hybrid contribution -1.013 -1.052 1.061 1.805 sum 9.573 20.527 -6.969 23.697 Atomic orbital electron populations 1.22212 0.75757 1.04967 1.04087 1.44111 1.07352 1.05221 1.52869 1.22700 0.90616 0.92274 1.06107 1.21231 0.97080 0.94454 1.10951 1.21828 0.94106 0.96473 1.05156 1.20134 0.91960 0.86962 1.20515 1.17592 0.83774 0.84706 0.77524 1.90824 1.23263 1.82998 1.48868 1.47949 1.24482 1.05101 1.54915 1.22817 0.82140 1.03984 0.96024 1.21891 0.98354 0.94026 1.02030 1.21509 0.95819 0.97369 0.99898 1.21876 0.95278 0.96067 0.98834 0.93332 1.21055 0.87890 0.93659 0.94743 1.44403 1.07234 1.47741 1.34194 1.19555 0.96087 1.19776 1.04122 0.91436 1.25816 0.97783 0.99657 1.01490 1.70198 1.05167 1.48593 1.34177 0.85269 0.77914 0.77299 0.80021 1.21755 1.21774 1.18841 1.20710 0.90030 0.88007 0.96088 1.22345 0.97869 0.96263 0.98073 1.21015 0.94828 0.79587 0.98103 0.91668 0.90705 0.86304 0.91410 0.77940 0.81251 0.81429 0.85277 0.90458 0.92009 0.87000 0.90356 0.90955 0.96065 0.92170 0.94163 0.93395 0.98586 0.95183 0.90747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.40 10.52 127.77 1.34 2.74 16 2 N -0.42 -9.54 3.16 -534.31 -1.69 -11.22 16 3 C 0.02 0.28 11.38 83.48 0.95 1.24 16 4 C -0.21 -3.44 10.81 22.01 0.24 -3.20 16 5 C -0.15 -3.09 8.59 22.57 0.19 -2.90 16 6 C -0.08 -2.24 6.48 40.35 0.26 -1.98 16 7 C 0.57 19.75 7.30 86.45 0.63 20.38 16 8 O -0.58 -24.33 11.13 -4.32 -0.05 -24.38 16 9 N -0.59 -18.43 2.97 -800.00 -2.38 -20.80 16 10 C 0.07 1.46 5.80 86.31 0.50 1.96 16 11 C -0.13 -2.27 5.87 30.69 0.18 -2.09 16 12 C -0.11 -2.58 5.24 30.58 0.16 -2.42 16 13 C -0.10 -3.50 2.21 -10.74 -0.02 -3.52 16 14 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 15 C 0.15 6.52 5.86 86.29 0.51 7.03 16 16 N -0.61 -33.10 3.01 -698.71 -2.10 -35.20 16 17 C -0.27 -15.50 9.58 84.03 0.81 -14.69 16 18 H 0.07 3.81 7.88 -2.91 -0.02 3.79 16 19 C -0.05 -3.09 4.91 84.86 0.42 -2.67 16 20 N -0.94 -58.62 11.17 21.65 0.24 -58.38 16 21 Si 0.97 47.36 29.59 68.60 2.03 49.38 16 22 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 23 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 24 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 25 C 0.18 9.69 5.27 86.40 0.46 10.15 16 26 C -0.11 -4.97 3.82 30.66 0.12 -4.86 16 27 C 0.17 6.26 2.64 45.01 0.12 6.38 16 28 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.72 6.92 -2.39 -0.02 1.70 16 32 H 0.20 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.17 2.83 5.88 -2.91 -0.02 2.81 16 35 H 0.13 2.26 3.21 -2.39 -0.01 2.25 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 41 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.06 2.49 7.93 -2.38 -0.02 2.47 16 43 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 44 H 0.05 2.97 6.04 -2.39 -0.01 2.95 16 45 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 46 H 0.03 1.54 7.52 -2.39 -0.02 1.52 16 47 H 0.07 3.59 6.05 -2.40 -0.01 3.58 16 Total: -1.00 -77.88 354.04 3.87 -74.01 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.96 Total: 15.05 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 6.85 Total: 11.54 kcal Atomic # 7 Polarization: -119.68 SS G_CDS: -5.92 Total: -125.61 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.05 Total: -24.38 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.38 kcal Total: -77.88 3.87 -74.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021523386.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.149 kcal (2) G-P(sol) polarization free energy of solvation -77.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds