Wall clock time and date at job start Tue Mar 31 2020 11:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99807 * 2 1 4 4 C 1.46897 * 111.00461 * 123.95700 * 2 1 3 5 5 C 1.50695 * 109.47511 * 169.99777 * 4 2 1 6 6 C 1.38363 * 119.85356 * 89.99767 * 5 4 2 7 7 C 1.37956 * 120.14702 * 180.02562 * 6 5 4 8 8 C 1.39576 * 119.84932 * 0.28830 * 7 6 5 9 9 C 1.47851 * 120.13897 * 179.71861 * 8 7 6 10 10 O 1.21548 * 120.00104 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99404 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99572 * 180.02562 * 11 9 8 13 13 H 1.08997 * 112.85366 * 25.33141 * 12 11 9 14 14 C 1.53776 * 113.61460 * 156.53269 * 12 11 9 15 15 C 1.53785 * 87.08275 * 139.98002 * 14 12 11 16 16 H 1.08998 * 113.61348 * 89.11835 * 15 14 12 17 17 N 1.46499 * 113.61265 * 219.93726 * 15 14 12 18 18 C 1.36934 * 119.99622 * 205.00170 * 17 15 14 19 19 H 1.08002 * 120.00485 * 359.97438 * 18 17 15 20 20 C 1.38813 * 120.00010 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99818 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00157 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47069 * 60.00514 * 22 20 18 24 24 H 1.48508 * 109.46965 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47144 * 300.00267 * 22 20 18 26 26 C 1.53790 * 113.61410 * 254.13961 * 12 11 9 27 27 C 1.39571 * 119.71454 * 359.41598 * 8 7 6 28 28 C 1.37966 * 119.85212 * 0.60145 * 27 8 7 29 29 H 1.08999 * 109.46836 * 296.03988 * 1 2 3 30 30 H 1.09001 * 109.47101 * 56.04465 * 1 2 3 31 31 H 1.09006 * 109.47062 * 176.04535 * 1 2 3 32 32 H 1.09003 * 109.46688 * 183.95412 * 3 2 1 33 33 H 1.08999 * 109.47063 * 303.95528 * 3 2 1 34 34 H 1.09001 * 109.46909 * 63.95731 * 3 2 1 35 35 H 1.08999 * 109.46826 * 49.99895 * 4 2 1 36 36 H 1.09004 * 109.47088 * 290.00614 * 4 2 1 37 37 H 1.08008 * 119.92400 * 0.04843 * 6 5 4 38 38 H 1.08002 * 120.07114 * 180.02562 * 7 6 5 39 39 H 0.96996 * 120.00513 * 0.02562 * 11 9 8 40 40 H 1.09006 * 113.61439 * 254.52906 * 14 12 11 41 41 H 1.09000 * 113.61799 * 25.42995 * 14 12 11 42 42 H 0.97003 * 120.00355 * 24.99441 * 17 15 14 43 43 H 0.96998 * 119.99826 * 180.02562 * 21 20 18 44 44 H 1.09001 * 113.60892 * 334.56796 * 26 12 11 45 45 H 1.08993 * 113.61302 * 105.46567 * 26 12 11 46 46 H 1.07996 * 120.07890 * 180.27432 * 27 8 7 47 47 H 1.07994 * 119.93014 * 179.69913 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4818 -0.9525 0.9727 6 6 4.3557 -0.0158 1.4955 7 6 5.7174 -0.1803 1.3477 8 6 6.2127 -1.2916 0.6638 9 6 7.6707 -1.4710 0.4963 10 8 8.4407 -0.6495 0.9542 11 7 8.1459 -2.5455 -0.1642 12 6 9.5906 -2.7236 -0.3298 13 1 10.1704 -2.2231 0.4457 14 6 10.0082 -4.1848 -0.5648 15 6 11.0175 -3.6484 -1.5937 16 1 11.9883 -3.4004 -1.1647 17 7 11.1223 -4.4749 -2.7988 18 6 12.2710 -4.4561 -3.5440 19 1 13.0994 -3.8316 -3.2437 20 6 12.3706 -5.2396 -4.6855 21 7 11.3609 -6.0003 -5.0518 22 14 13.9373 -5.2134 -5.7026 23 1 15.0798 -5.6555 -4.8633 24 1 13.7902 -6.1299 -6.8618 25 1 14.1870 -3.8336 -6.1916 26 6 10.0879 -2.4319 -1.7555 27 6 5.3260 -2.2360 0.1443 28 6 3.9665 -2.0594 0.2987 29 1 -0.3633 0.4511 0.9233 30 1 -0.3633 0.5740 -0.8524 31 1 -0.3633 -1.0253 -0.0709 32 1 3.0828 1.3432 -0.0709 33 1 1.5897 1.9164 -0.8524 34 1 1.7044 1.8723 0.9233 35 1 1.5091 -1.7407 1.1755 36 1 1.7976 -0.2249 2.0628 37 1 3.9708 0.8459 2.0208 38 1 6.3984 0.5515 1.7566 39 1 7.5314 -3.2008 -0.5300 40 1 10.4752 -4.6505 0.3031 41 1 9.2216 -4.7985 -1.0037 42 1 10.3782 -5.0356 -3.0687 43 1 11.4306 -6.5481 -5.8493 44 1 9.3230 -2.5656 -2.5205 45 1 10.6189 -1.4846 -1.8474 46 1 5.7031 -3.1004 -0.3821 47 1 3.2791 -2.7868 -0.1070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022855733.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:07 Heat of formation + Delta-G solvation = 28.728877 kcal Electronic energy + Delta-G solvation = -25267.539070 eV Core-core repulsion = 21644.157878 eV Total energy + Delta-G solvation = -3623.381191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.43333 -39.28208 -37.96631 -37.06607 -34.15080 -32.95460 -31.93549 -31.17938 -29.83357 -28.00060 -27.52891 -25.12109 -24.71131 -23.59923 -22.89747 -22.19971 -21.34386 -20.28215 -19.40085 -17.86413 -17.08257 -16.52692 -16.10736 -15.92060 -15.75870 -15.17552 -14.91531 -14.77331 -14.58318 -14.37165 -14.22604 -13.76116 -13.48887 -13.03097 -12.92317 -12.80951 -12.71924 -12.51776 -12.16179 -12.12440 -11.94366 -11.91215 -11.60004 -11.28875 -11.21829 -10.91016 -10.63072 -10.51274 -10.31798 -10.08298 -9.80075 -9.59110 -9.23952 -9.14377 -8.90374 -8.80065 -8.68532 -6.98449 -5.79901 -3.08740 0.61541 1.14018 2.75319 3.25754 3.43707 3.48137 3.49123 3.51843 3.83906 4.30810 4.45218 4.58345 4.64314 4.71855 4.77544 4.84415 4.90982 5.03120 5.05015 5.09264 5.16098 5.24008 5.24570 5.35273 5.37700 5.42609 5.47878 5.56298 5.57560 5.74950 5.86775 5.93221 6.03636 6.09853 6.16903 6.22904 6.25437 6.31981 6.49097 6.51568 6.54997 6.62424 6.64444 6.74970 7.07244 7.62809 7.68738 8.28055 8.38638 9.49886 10.06491 10.41115 11.42410 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021468 B = 0.002065 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.978834 B =13555.792375 C =14251.171205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.542 5.542 3 C 0.018 3.982 4 C 0.090 3.910 5 C -0.060 4.060 6 C -0.123 4.123 7 C -0.061 4.061 8 C -0.129 4.129 9 C 0.555 3.445 10 O -0.543 6.543 11 N -0.708 5.708 12 C 0.118 3.882 13 H 0.109 0.891 14 C -0.158 4.158 15 C 0.169 3.831 16 H 0.080 0.920 17 N -0.710 5.710 18 C -0.245 4.245 19 H 0.072 0.928 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.909 3.091 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C -0.176 4.176 27 C -0.085 4.085 28 C -0.105 4.105 29 H 0.025 0.975 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.026 0.974 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.124 0.876 38 H 0.135 0.865 39 H 0.399 0.601 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.079 0.921 45 H 0.059 0.941 46 H 0.128 0.872 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.623 10.729 14.794 29.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.130 4.130 4 C -0.037 4.037 5 C -0.060 4.060 6 C -0.142 4.142 7 C -0.080 4.080 8 C -0.132 4.132 9 C 0.342 3.658 10 O -0.421 6.421 11 N -0.358 5.358 12 C 0.013 3.987 13 H 0.127 0.873 14 C -0.198 4.198 15 C 0.056 3.944 16 H 0.098 0.902 17 N -0.347 5.347 18 C -0.376 4.376 19 H 0.090 0.910 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.740 3.260 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.219 4.219 27 C -0.104 4.104 28 C -0.123 4.123 29 H 0.044 0.956 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.104 0.896 36 H 0.063 0.937 37 H 0.142 0.858 38 H 0.153 0.847 39 H 0.234 0.766 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.098 0.902 45 H 0.078 0.922 46 H 0.146 0.854 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.717 11.061 14.566 28.393 hybrid contribution -0.094 -0.087 -0.242 0.274 sum -21.812 10.974 14.323 28.308 Atomic orbital electron populations 1.22406 0.86890 1.02475 1.00642 1.61978 1.07842 1.14272 1.42447 1.22509 1.01750 0.88311 1.00431 1.21121 0.91424 0.99226 0.91931 1.19882 0.94798 0.94576 0.96780 1.21006 0.92845 0.99163 1.01167 1.21233 0.95199 0.96193 0.95407 1.20062 0.93108 0.97396 1.02661 1.18308 0.87760 0.81672 0.78065 1.90750 1.58701 1.43079 1.49616 1.45996 1.08704 1.24852 1.56242 1.22528 0.79357 0.97944 0.98873 0.87268 1.23861 1.00685 0.94711 1.00559 1.21378 0.94841 0.90332 0.87824 0.90200 1.42341 1.17178 1.50088 1.25133 1.19275 0.93261 1.20983 1.04069 0.91021 1.24771 0.97914 0.99467 0.98747 1.69647 1.30711 1.30940 1.26814 0.86245 0.82805 0.77289 0.79711 1.21195 1.21695 1.21204 1.24369 1.01077 1.01471 0.94944 1.21360 0.93319 0.98068 0.97661 1.20937 0.94964 0.97853 0.98591 0.95619 0.91104 0.91171 0.90645 0.91271 0.95593 0.89591 0.93675 0.85811 0.84667 0.76587 0.91409 0.89965 0.78090 0.93404 0.90198 0.92177 0.85374 0.85292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.57 60.06 0.57 0.70 16 2 N -0.54 -3.97 5.01 -252.72 -1.27 -5.24 16 3 C 0.02 0.12 9.13 60.07 0.55 0.67 16 4 C 0.09 0.61 5.11 -4.98 -0.03 0.58 16 5 C -0.06 -0.50 4.89 -104.53 -0.51 -1.01 16 6 C -0.12 -1.08 7.94 -39.64 -0.31 -1.39 16 7 C -0.06 -0.67 9.60 -39.19 -0.38 -1.04 16 8 C -0.13 -1.54 5.87 -104.97 -0.62 -2.15 16 9 C 0.55 8.13 7.77 -12.33 -0.10 8.03 16 10 O -0.54 -9.77 15.97 5.32 0.09 -9.69 16 11 N -0.71 -9.56 5.31 -53.96 -0.29 -9.85 16 12 C 0.12 1.80 4.21 -67.11 -0.28 1.52 16 13 H 0.11 1.74 7.50 -51.93 -0.39 1.35 16 14 C -0.16 -2.49 7.58 -25.92 -0.20 -2.69 16 15 C 0.17 3.30 4.48 -67.03 -0.30 3.00 16 16 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 17 N -0.71 -17.51 5.41 -52.55 -0.28 -17.79 16 18 C -0.24 -6.75 9.97 -15.06 -0.15 -6.90 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -27.89 13.06 55.49 0.72 -27.17 16 22 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 26 C -0.18 -3.14 7.70 -25.82 -0.20 -3.34 16 27 C -0.09 -0.84 9.54 -39.18 -0.37 -1.21 16 28 C -0.10 -0.91 9.68 -39.64 -0.38 -1.30 16 29 H 0.03 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.07 0.36 8.12 -51.93 -0.42 -0.07 16 31 H 0.07 0.34 8.12 -51.93 -0.42 -0.09 16 32 H 0.07 0.59 6.16 -51.93 -0.32 0.27 16 33 H 0.07 0.44 8.12 -51.93 -0.42 0.01 16 34 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 35 H 0.09 0.50 8.00 -51.93 -0.42 0.08 16 36 H 0.05 0.27 8.06 -51.93 -0.42 -0.14 16 37 H 0.12 0.84 8.03 -52.48 -0.42 0.42 16 38 H 0.14 1.49 7.65 -52.49 -0.40 1.09 16 39 H 0.40 4.45 6.75 -40.82 -0.28 4.18 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.08 1.27 8.09 -51.93 -0.42 0.85 16 42 H 0.39 9.99 7.92 -40.82 -0.32 9.66 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 46 H 0.13 1.04 6.41 -52.49 -0.34 0.70 16 47 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 LS Contribution 386.11 15.07 5.82 5.82 Total: -1.00 -32.63 386.11 -10.52 -43.15 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -7.49 Total: 10.48 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -2.80 Total: -7.00 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -1.11 Total: -60.05 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.63 -10.52 -43.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022855733.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.876 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds