Wall clock time and date at job start Tue Mar 31 2020 11:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99807 * 2 1 4 4 C 1.46897 * 111.00461 * 123.95700 * 2 1 3 5 5 C 1.50695 * 109.47511 * 169.99777 * 4 2 1 6 6 C 1.38363 * 119.85356 * 89.99767 * 5 4 2 7 7 C 1.37956 * 120.14702 * 180.02562 * 6 5 4 8 8 C 1.39576 * 119.84932 * 0.28830 * 7 6 5 9 9 C 1.47851 * 120.13897 * 179.71861 * 8 7 6 10 10 O 1.21548 * 120.00104 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99404 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99572 * 180.02562 * 11 9 8 13 13 H 1.08997 * 112.85366 * 25.33141 * 12 11 9 14 14 C 1.53776 * 113.61460 * 156.53269 * 12 11 9 15 15 C 1.53785 * 87.08275 * 139.98002 * 14 12 11 16 16 H 1.08998 * 113.61348 * 89.11835 * 15 14 12 17 17 N 1.46499 * 113.61265 * 219.93726 * 15 14 12 18 18 C 1.36934 * 119.99622 * 205.00170 * 17 15 14 19 19 H 1.08002 * 120.00485 * 359.97438 * 18 17 15 20 20 C 1.38813 * 120.00010 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99818 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00157 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47069 * 60.00514 * 22 20 18 24 24 H 1.48508 * 109.46965 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47144 * 300.00267 * 22 20 18 26 26 C 1.53790 * 113.61410 * 254.13961 * 12 11 9 27 27 C 1.39571 * 119.71454 * 359.41598 * 8 7 6 28 28 C 1.37966 * 119.85212 * 0.60145 * 27 8 7 29 29 H 1.08999 * 109.46836 * 296.03988 * 1 2 3 30 30 H 1.09001 * 109.47101 * 56.04465 * 1 2 3 31 31 H 1.09006 * 109.47062 * 176.04535 * 1 2 3 32 32 H 1.09003 * 109.46688 * 183.95412 * 3 2 1 33 33 H 1.08999 * 109.47063 * 303.95528 * 3 2 1 34 34 H 1.09001 * 109.46909 * 63.95731 * 3 2 1 35 35 H 1.08999 * 109.46826 * 49.99895 * 4 2 1 36 36 H 1.09004 * 109.47088 * 290.00614 * 4 2 1 37 37 H 1.08008 * 119.92400 * 0.04843 * 6 5 4 38 38 H 1.08002 * 120.07114 * 180.02562 * 7 6 5 39 39 H 0.96996 * 120.00513 * 0.02562 * 11 9 8 40 40 H 1.09006 * 113.61439 * 254.52906 * 14 12 11 41 41 H 1.09000 * 113.61799 * 25.42995 * 14 12 11 42 42 H 0.97003 * 120.00355 * 24.99441 * 17 15 14 43 43 H 0.96998 * 119.99826 * 180.02562 * 21 20 18 44 44 H 1.09001 * 113.60892 * 334.56796 * 26 12 11 45 45 H 1.08993 * 113.61302 * 105.46567 * 26 12 11 46 46 H 1.07996 * 120.07890 * 180.27432 * 27 8 7 47 47 H 1.07994 * 119.93014 * 179.69913 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4818 -0.9525 0.9727 6 6 4.3557 -0.0158 1.4955 7 6 5.7174 -0.1803 1.3477 8 6 6.2127 -1.2916 0.6638 9 6 7.6707 -1.4710 0.4963 10 8 8.4407 -0.6495 0.9542 11 7 8.1459 -2.5455 -0.1642 12 6 9.5906 -2.7236 -0.3298 13 1 10.1704 -2.2231 0.4457 14 6 10.0082 -4.1848 -0.5648 15 6 11.0175 -3.6484 -1.5937 16 1 11.9883 -3.4004 -1.1647 17 7 11.1223 -4.4749 -2.7988 18 6 12.2710 -4.4561 -3.5440 19 1 13.0994 -3.8316 -3.2437 20 6 12.3706 -5.2396 -4.6855 21 7 11.3609 -6.0003 -5.0518 22 14 13.9373 -5.2134 -5.7026 23 1 15.0798 -5.6555 -4.8633 24 1 13.7902 -6.1299 -6.8618 25 1 14.1870 -3.8336 -6.1916 26 6 10.0879 -2.4319 -1.7555 27 6 5.3260 -2.2360 0.1443 28 6 3.9665 -2.0594 0.2987 29 1 -0.3633 0.4511 0.9233 30 1 -0.3633 0.5740 -0.8524 31 1 -0.3633 -1.0253 -0.0709 32 1 3.0828 1.3432 -0.0709 33 1 1.5897 1.9164 -0.8524 34 1 1.7044 1.8723 0.9233 35 1 1.5091 -1.7407 1.1755 36 1 1.7976 -0.2249 2.0628 37 1 3.9708 0.8459 2.0208 38 1 6.3984 0.5515 1.7566 39 1 7.5314 -3.2008 -0.5300 40 1 10.4752 -4.6505 0.3031 41 1 9.2216 -4.7985 -1.0037 42 1 10.3782 -5.0356 -3.0687 43 1 11.4306 -6.5481 -5.8493 44 1 9.3230 -2.5656 -2.5205 45 1 10.6189 -1.4846 -1.8474 46 1 5.7031 -3.1004 -0.3821 47 1 3.2791 -2.7868 -0.1070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022855733.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:06 Heat of formation + Delta-G solvation = 6.893422 kcal Electronic energy + Delta-G solvation = -25268.485926 eV Core-core repulsion = 21644.157878 eV Total energy + Delta-G solvation = -3624.328048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.44945 -40.26101 -39.18696 -37.75632 -35.81502 -34.44533 -32.81765 -32.04058 -31.59109 -28.49182 -28.20813 -26.56836 -26.36445 -24.75830 -23.68828 -23.26513 -22.20192 -21.32725 -20.80101 -19.27442 -18.70475 -17.71632 -16.87104 -16.63396 -16.43037 -16.33029 -16.14558 -15.95631 -15.85302 -15.39374 -15.19437 -14.92055 -14.67219 -14.45712 -14.11774 -13.73664 -13.39909 -13.31442 -13.21793 -13.15906 -13.06615 -12.79105 -12.67321 -12.47370 -12.28751 -12.26005 -12.14514 -12.06776 -11.93354 -11.76070 -11.52480 -10.98146 -10.84300 -10.13008 -9.94642 -9.78716 -9.27602 -8.98462 -7.94749 -5.22826 -0.20220 0.41409 1.48391 1.50879 1.56832 1.78535 2.14468 2.57634 2.76629 3.24226 3.36430 3.58964 3.69451 3.79110 3.84212 3.88208 3.95722 4.01402 4.21085 4.26244 4.30076 4.30745 4.40825 4.46250 4.57962 4.62120 4.70478 4.74502 4.78509 4.86857 4.87663 4.90247 5.04771 5.05517 5.06617 5.12453 5.14465 5.29542 5.34693 5.37569 5.51060 5.54795 5.66240 5.89443 6.03737 6.08713 6.27509 6.52808 7.16510 7.34154 8.09540 8.33337 9.28035 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021468 B = 0.002065 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.978834 B =13555.792375 C =14251.171205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.558 5.558 3 C 0.018 3.982 4 C 0.091 3.909 5 C -0.054 4.054 6 C -0.119 4.119 7 C -0.074 4.074 8 C -0.151 4.151 9 C 0.554 3.446 10 O -0.584 6.584 11 N -0.700 5.700 12 C 0.135 3.865 13 H 0.107 0.893 14 C -0.138 4.138 15 C 0.151 3.849 16 H 0.080 0.920 17 N -0.722 5.722 18 C -0.247 4.247 19 H 0.076 0.924 20 C -0.075 4.075 21 N -0.968 5.968 22 Si 0.972 3.028 23 H -0.277 1.277 24 H -0.295 1.295 25 H -0.281 1.281 26 C -0.171 4.171 27 C -0.084 4.084 28 C -0.107 4.107 29 H 0.032 0.968 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.035 0.965 35 H 0.099 0.901 36 H 0.055 0.945 37 H 0.143 0.857 38 H 0.125 0.875 39 H 0.412 0.588 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.376 0.624 43 H 0.251 0.749 44 H 0.070 0.930 45 H 0.052 0.948 46 H 0.143 0.857 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.290 10.805 15.652 30.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.282 5.282 3 C -0.130 4.130 4 C -0.036 4.036 5 C -0.055 4.055 6 C -0.138 4.138 7 C -0.093 4.093 8 C -0.154 4.154 9 C 0.343 3.657 10 O -0.465 6.465 11 N -0.350 5.350 12 C 0.029 3.971 13 H 0.125 0.875 14 C -0.178 4.178 15 C 0.041 3.959 16 H 0.098 0.902 17 N -0.360 5.360 18 C -0.379 4.379 19 H 0.094 0.906 20 C -0.267 4.267 21 N -0.618 5.618 22 Si 0.801 3.199 23 H -0.203 1.203 24 H -0.222 1.222 25 H -0.207 1.207 26 C -0.213 4.213 27 C -0.103 4.103 28 C -0.125 4.125 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.053 0.947 35 H 0.117 0.883 36 H 0.073 0.927 37 H 0.161 0.839 38 H 0.143 0.857 39 H 0.249 0.751 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.208 0.792 43 H 0.060 0.940 44 H 0.089 0.911 45 H 0.071 0.929 46 H 0.161 0.839 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -23.405 11.154 15.461 30.187 hybrid contribution 0.323 -0.028 -0.445 0.550 sum -23.082 11.126 15.016 29.700 Atomic orbital electron populations 1.22434 0.85732 1.03089 1.01083 1.61973 1.08991 1.14418 1.42809 1.22487 1.00938 0.88495 1.01056 1.21160 0.90094 1.00093 0.92225 1.20173 0.95886 0.93959 0.95459 1.21178 0.91882 0.99837 1.00883 1.21280 0.96164 0.95987 0.95849 1.19926 0.91579 0.98997 1.04940 1.18757 0.88853 0.80980 0.77124 1.90722 1.59957 1.44460 1.51387 1.45851 1.08067 1.25084 1.56009 1.22193 0.80542 0.97353 0.96975 0.87543 1.23662 0.99463 0.94979 0.99653 1.21684 0.96109 0.90925 0.87230 0.90235 1.42475 1.16125 1.50855 1.26531 1.19665 0.94107 1.19999 1.04099 0.90637 1.25551 1.00948 0.99952 1.00271 1.69793 1.32567 1.32168 1.27255 0.85237 0.79527 0.77156 0.77987 1.20316 1.22158 1.20686 1.24210 1.00428 1.00183 0.96514 1.21529 0.93624 0.97920 0.97236 1.21220 0.94751 0.98351 0.98221 0.94933 0.90946 0.90461 0.91900 0.91063 0.94663 0.88273 0.92724 0.83947 0.85683 0.75057 0.89679 0.89261 0.79159 0.93990 0.91125 0.92878 0.83908 0.83241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.57 127.69 1.22 1.43 16 2 N -0.56 -6.86 5.01 -953.46 -4.78 -11.63 16 3 C 0.02 0.22 9.13 127.69 1.17 1.38 16 4 C 0.09 0.97 5.11 85.56 0.44 1.41 16 5 C -0.05 -0.78 4.89 -19.81 -0.10 -0.88 16 6 C -0.12 -1.91 7.94 22.23 0.18 -1.74 16 7 C -0.07 -1.59 9.60 22.53 0.22 -1.37 16 8 C -0.15 -3.52 5.87 -20.09 -0.12 -3.64 16 9 C 0.55 16.13 7.77 86.79 0.67 16.81 16 10 O -0.58 -21.37 15.97 -3.87 -0.06 -21.43 16 11 N -0.70 -18.28 5.31 -442.89 -2.35 -20.63 16 12 C 0.13 4.02 4.21 45.52 0.19 4.21 16 13 H 0.11 3.33 7.50 -2.39 -0.02 3.31 16 14 C -0.14 -4.16 7.58 31.12 0.24 -3.92 16 15 C 0.15 5.85 4.48 45.58 0.20 6.05 16 16 H 0.08 3.07 8.10 -2.39 -0.02 3.05 16 17 N -0.72 -35.79 5.41 -320.16 -1.73 -37.52 16 18 C -0.25 -13.65 9.97 84.03 0.84 -12.82 16 19 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 20 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 21 N -0.97 -58.56 13.06 21.65 0.28 -58.28 16 22 Si 0.97 46.10 29.55 68.60 2.03 48.13 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 24 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 25 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 26 C -0.17 -6.09 7.70 31.18 0.24 -5.85 16 27 C -0.08 -1.51 9.54 22.53 0.21 -1.30 16 28 C -0.11 -1.61 9.68 22.23 0.22 -1.39 16 29 H 0.03 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.07 0.58 8.12 -2.39 -0.02 0.56 16 31 H 0.08 0.54 8.12 -2.38 -0.02 0.52 16 32 H 0.06 0.90 6.16 -2.39 -0.01 0.88 16 33 H 0.07 0.79 8.12 -2.39 -0.02 0.78 16 34 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.10 0.81 8.00 -2.39 -0.02 0.79 16 36 H 0.05 0.50 8.06 -2.38 -0.02 0.48 16 37 H 0.14 1.68 8.03 -2.91 -0.02 1.65 16 38 H 0.13 2.87 7.65 -2.91 -0.02 2.84 16 39 H 0.41 8.58 6.75 -92.71 -0.63 7.95 16 40 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 41 H 0.09 2.60 8.09 -2.39 -0.02 2.58 16 42 H 0.38 19.71 7.92 -92.71 -0.73 18.98 16 43 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 44 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 45 H 0.05 1.93 8.14 -2.39 -0.02 1.92 16 46 H 0.14 2.02 6.41 -2.91 -0.02 2.00 16 47 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -70.25 386.11 -0.71 -70.96 By element: Atomic # 1 Polarization: 36.21 SS G_CDS: -0.39 Total: 35.82 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: 6.28 Total: -5.42 kcal Atomic # 7 Polarization: -119.49 SS G_CDS: -8.58 Total: -128.06 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.06 Total: -21.43 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -70.25 -0.71 -70.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022855733.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.857 kcal (2) G-P(sol) polarization free energy of solvation -70.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds