Wall clock time and date at job start Tue Mar 31 2020 11:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46901 * 111.00166 * 2 1 4 4 C 1.46901 * 110.99857 * 123.95124 * 2 1 3 5 5 C 1.50695 * 109.47302 * 165.42117 * 4 2 1 6 6 C 1.37981 * 120.07498 * 105.00590 * 5 4 2 7 7 C 1.38340 * 120.14641 * 179.97438 * 6 5 4 8 8 C 1.38384 * 120.29093 * 0.02562 * 7 6 5 9 9 C 1.37944 * 120.14550 * 359.74522 * 8 7 6 10 10 C 1.39559 * 120.07588 * 284.98780 * 5 4 2 11 11 C 1.47854 * 120.13980 * 359.97438 * 10 5 4 12 12 O 1.21549 * 119.99859 * 5.55128 * 11 10 5 13 13 N 1.34781 * 119.99607 * 185.55048 * 11 10 5 14 14 C 1.46504 * 119.99635 * 179.97438 * 13 11 10 15 15 H 1.08994 * 112.84917 * 23.80241 * 14 13 11 16 16 C 1.53778 * 113.61107 * 155.00075 * 14 13 11 17 17 C 1.53785 * 87.08223 * 89.11684 * 16 14 13 18 18 H 1.08998 * 113.61532 * 140.06139 * 17 16 14 19 19 N 1.46499 * 113.61362 * 270.88241 * 17 16 14 20 20 C 1.36935 * 119.99879 * 203.46504 * 19 17 16 21 21 H 1.07989 * 120.00241 * 0.02562 * 20 19 17 22 22 C 1.38819 * 119.99600 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99670 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00066 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47156 * 269.99338 * 24 22 20 26 26 H 1.48495 * 109.47257 * 29.99966 * 24 22 20 27 27 H 1.48508 * 109.46951 * 149.99571 * 24 22 20 28 28 C 1.53790 * 87.17061 * 25.47130 * 17 16 14 29 29 H 1.09004 * 109.47229 * 296.04765 * 1 2 3 30 30 H 1.08998 * 109.47109 * 56.04925 * 1 2 3 31 31 H 1.09004 * 109.47431 * 176.04770 * 1 2 3 32 32 H 1.09002 * 109.47131 * 181.70542 * 3 2 1 33 33 H 1.09004 * 109.46895 * 301.70168 * 3 2 1 34 34 H 1.09001 * 109.46948 * 61.70235 * 3 2 1 35 35 H 1.09006 * 109.47292 * 45.41843 * 4 2 1 36 36 H 1.09003 * 109.47330 * 285.42424 * 4 2 1 37 37 H 1.07994 * 119.92956 * 359.97438 * 6 5 4 38 38 H 1.07992 * 119.85751 * 180.02562 * 7 6 5 39 39 H 1.07998 * 119.92694 * 179.97438 * 8 7 6 40 40 H 1.08000 * 120.07136 * 180.27252 * 9 8 7 41 41 H 0.96993 * 120.00089 * 359.97438 * 13 11 10 42 42 H 1.08997 * 113.61895 * 334.57053 * 16 14 13 43 43 H 1.09001 * 113.60975 * 203.66103 * 16 14 13 44 44 H 0.96999 * 120.00172 * 23.47344 * 19 17 16 45 45 H 0.97001 * 120.00167 * 180.02562 * 23 22 20 46 46 H 1.09004 * 113.61222 * 89.08011 * 28 17 16 47 47 H 1.08996 * 113.61038 * 219.97594 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.4591 -1.0493 0.9182 6 6 4.4131 -0.3458 1.6245 7 6 5.7572 -0.6051 1.4246 8 6 6.1542 -1.5702 0.5159 9 6 5.2106 -2.2841 -0.1933 10 6 3.8528 -2.0242 0.0005 11 6 2.8360 -2.7826 -0.7591 12 8 1.6604 -2.4897 -0.6607 13 7 3.2127 -3.7987 -1.5605 14 6 2.2051 -4.5505 -2.3127 15 1 1.2909 -3.9814 -2.4813 16 6 2.7569 -5.2200 -3.5824 17 6 3.0858 -6.4377 -2.7025 18 1 2.8831 -7.3933 -3.1861 19 7 4.4169 -6.3793 -2.0936 20 6 5.0422 -7.5331 -1.7026 21 1 4.5542 -8.4861 -1.8435 22 6 6.3038 -7.4777 -1.1260 23 7 6.9049 -8.5868 -0.7507 24 14 7.1481 -5.8293 -0.8829 25 1 7.9561 -5.5048 -2.0859 26 1 6.1238 -4.7744 -0.6752 27 1 8.0357 -5.8983 0.3057 28 6 1.9590 -5.9697 -1.7663 29 1 -0.3634 0.4513 0.9233 30 1 -0.3633 0.5739 -0.8525 31 1 -0.3634 -1.0252 -0.0708 32 1 3.0846 1.3425 -0.0306 33 1 1.6215 1.9041 -0.8744 34 1 1.6708 1.8852 0.9049 35 1 1.4521 -1.7070 1.2247 36 1 1.8704 -0.1883 2.0536 37 1 4.1098 0.4090 2.3349 38 1 6.4998 -0.0520 1.9802 39 1 7.2051 -1.7676 0.3642 40 1 5.5217 -3.0401 -0.8990 41 1 4.1508 -4.0321 -1.6392 42 1 3.6384 -4.7247 -3.9894 43 1 1.9959 -5.4193 -4.3368 44 1 4.8554 -5.5233 -1.9672 45 1 7.7863 -8.5482 -0.3474 46 1 0.9802 -6.3736 -2.0252 47 1 2.1968 -6.0791 -0.7083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023130324.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:14 Heat of formation + Delta-G solvation = 52.906474 kcal Electronic energy + Delta-G solvation = -27647.497158 eV Core-core repulsion = 24025.164386 eV Total energy + Delta-G solvation = -3622.332772 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.45585 -39.14112 -37.48817 -36.98669 -33.73341 -32.87407 -31.73888 -31.04568 -30.34191 -27.55291 -26.88928 -25.20265 -24.84107 -23.77616 -22.53111 -22.23616 -20.93968 -20.19114 -19.24794 -17.68222 -17.40349 -16.17377 -15.79209 -15.51581 -15.47472 -15.08030 -14.82690 -14.57389 -14.37159 -14.31657 -14.18376 -13.79781 -13.18216 -12.93246 -12.71281 -12.61525 -12.38725 -12.22808 -12.06278 -11.97325 -11.88553 -11.70768 -11.55123 -11.51252 -11.10805 -11.00232 -10.87680 -10.29930 -10.18300 -9.79757 -9.62068 -9.34827 -9.00906 -8.96566 -8.86491 -8.54212 -8.21763 -7.38437 -5.85891 -3.22959 0.90837 1.27778 3.07111 3.13764 3.26872 3.34069 3.43249 3.83407 4.20137 4.46113 4.70021 4.72352 4.79813 4.96799 4.99898 5.12583 5.15247 5.18680 5.27688 5.28273 5.38329 5.41254 5.44905 5.48874 5.60540 5.67737 5.75210 5.76614 5.80403 5.84285 5.95001 6.03198 6.06449 6.18318 6.20551 6.26586 6.38954 6.42172 6.50529 6.63260 6.75063 6.82130 7.03684 7.08262 7.14305 7.83045 7.91154 8.32929 8.56191 9.08474 9.80574 9.98639 11.32009 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013642 B = 0.004922 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.924462 B = 5687.420550 C = 7322.369669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.519 5.519 3 C 0.021 3.979 4 C 0.100 3.900 5 C -0.025 4.025 6 C -0.128 4.128 7 C -0.097 4.097 8 C -0.128 4.128 9 C -0.090 4.090 10 C -0.111 4.111 11 C 0.558 3.442 12 O -0.515 6.515 13 N -0.706 5.706 14 C 0.125 3.875 15 H 0.095 0.905 16 C -0.168 4.168 17 C 0.168 3.832 18 H 0.074 0.926 19 N -0.727 5.727 20 C -0.246 4.246 21 H 0.094 0.906 22 C 0.006 3.994 23 N -0.930 5.930 24 Si 0.879 3.121 25 H -0.282 1.282 26 H -0.275 1.275 27 H -0.288 1.288 28 C -0.184 4.184 29 H 0.015 0.985 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.019 0.981 35 H 0.102 0.898 36 H 0.031 0.969 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.397 0.603 42 H 0.068 0.932 43 H 0.094 0.906 44 H 0.354 0.646 45 H 0.260 0.740 46 H 0.081 0.919 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.966 19.139 1.664 20.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.242 5.242 3 C -0.128 4.128 4 C -0.027 4.027 5 C -0.027 4.027 6 C -0.147 4.147 7 C -0.115 4.115 8 C -0.146 4.146 9 C -0.108 4.108 10 C -0.114 4.114 11 C 0.345 3.655 12 O -0.392 6.392 13 N -0.359 5.359 14 C 0.020 3.980 15 H 0.113 0.887 16 C -0.208 4.208 17 C 0.057 3.943 18 H 0.092 0.908 19 N -0.369 5.369 20 C -0.376 4.376 21 H 0.112 0.888 22 C -0.190 4.190 23 N -0.577 5.577 24 Si 0.710 3.290 25 H -0.209 1.209 26 H -0.202 1.202 27 H -0.214 1.214 28 C -0.226 4.226 29 H 0.033 0.967 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.037 0.963 35 H 0.120 0.880 36 H 0.049 0.951 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.235 0.765 42 H 0.087 0.913 43 H 0.113 0.887 44 H 0.188 0.812 45 H 0.071 0.929 46 H 0.099 0.901 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.574 18.844 1.340 20.746 hybrid contribution 1.161 1.353 1.020 2.054 sum -7.413 20.197 2.360 21.643 Atomic orbital electron populations 1.22273 0.86944 1.02800 0.99150 1.61745 1.07847 1.12019 1.42601 1.22461 1.00900 0.89488 0.99911 1.21056 0.91364 0.99722 0.90605 1.19815 0.95598 0.93392 0.93850 1.20997 0.92723 1.00306 1.00671 1.21264 0.95861 0.97160 0.97253 1.21116 0.99786 0.96650 0.97035 1.21657 0.92275 0.98092 0.98820 1.19838 0.93187 0.98845 0.99559 1.18121 0.88379 0.79612 0.79372 1.90707 1.17772 1.67148 1.63541 1.45841 1.10810 1.33220 1.46062 1.21835 0.91731 0.92176 0.92263 0.88656 1.23867 1.01359 0.99013 0.96565 1.21167 0.85194 0.96123 0.91797 0.90799 1.42564 1.15608 1.05514 1.73263 1.19115 0.98680 0.86592 1.33183 0.88804 1.24687 0.97140 0.96366 1.00794 1.69684 1.15715 1.25351 1.46944 0.86721 0.79698 0.84722 0.77882 1.20885 1.20184 1.21430 1.24288 1.00437 0.95722 1.02189 0.96679 0.92014 0.90482 0.91615 0.91754 0.96261 0.88037 0.95081 0.85853 0.85705 0.85541 0.85312 0.76490 0.91310 0.88708 0.81231 0.92936 0.90099 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 9.30 60.06 0.56 0.98 16 2 N -0.52 -6.75 3.77 -252.72 -0.95 -7.70 16 3 C 0.02 0.22 9.41 60.07 0.56 0.79 16 4 C 0.10 1.31 4.11 -4.98 -0.02 1.29 16 5 C -0.03 -0.35 4.65 -104.23 -0.48 -0.83 16 6 C -0.13 -1.48 9.10 -39.64 -0.36 -1.84 16 7 C -0.10 -1.09 10.04 -39.49 -0.40 -1.48 16 8 C -0.13 -1.66 10.03 -39.64 -0.40 -2.05 16 9 C -0.09 -1.37 9.47 -39.19 -0.37 -1.74 16 10 C -0.11 -1.74 5.87 -104.97 -0.62 -2.36 16 11 C 0.56 9.54 7.72 -12.32 -0.10 9.45 16 12 O -0.52 -9.18 11.40 5.32 0.06 -9.12 16 13 N -0.71 -11.98 5.09 -53.82 -0.27 -12.25 16 14 C 0.13 2.00 4.33 -66.98 -0.29 1.71 16 15 H 0.10 1.49 7.46 -51.93 -0.39 1.11 16 16 C -0.17 -2.53 7.58 -25.92 -0.20 -2.73 16 17 C 0.17 3.11 4.55 -67.11 -0.31 2.81 16 18 H 0.07 1.37 8.11 -51.93 -0.42 0.95 16 19 N -0.73 -16.30 4.97 -52.63 -0.26 -16.56 16 20 C -0.25 -6.68 10.45 -15.06 -0.16 -6.84 16 21 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 22 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 23 N -0.93 -28.46 13.97 55.49 0.78 -27.68 16 24 Si 0.88 20.65 27.73 -169.99 -4.71 15.94 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.27 -5.69 4.14 56.52 0.23 -5.45 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 C -0.18 -3.13 7.70 -25.77 -0.20 -3.33 16 29 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.99 7.57 -51.93 -0.39 0.60 16 32 H 0.07 0.73 6.94 -51.93 -0.36 0.37 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.10 1.52 6.31 -51.93 -0.33 1.19 16 36 H 0.03 0.36 7.88 -51.93 -0.41 -0.05 16 37 H 0.12 1.12 8.00 -52.49 -0.42 0.70 16 38 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.13 2.04 4.42 -52.49 -0.23 1.81 16 41 H 0.40 6.96 3.94 -40.82 -0.16 6.80 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.35 7.59 3.23 -40.82 -0.13 7.46 16 45 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 366.57 15.07 5.52 5.52 Total: -1.00 -31.10 366.57 -9.90 -41.00 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -7.20 Total: 16.95 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -2.86 Total: -6.10 kcal Atomic # 7 Polarization: -63.48 SS G_CDS: -0.71 Total: -64.19 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.06 Total: -9.12 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.71 Total: 15.94 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.10 -9.90 -41.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023130324.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.908 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds