Wall clock time and date at job start Tue Mar 31 2020 11:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46901 * 111.00166 * 2 1 4 4 C 1.46901 * 110.99857 * 123.95124 * 2 1 3 5 5 C 1.50695 * 109.47302 * 165.42117 * 4 2 1 6 6 C 1.37981 * 120.07498 * 105.00590 * 5 4 2 7 7 C 1.38340 * 120.14641 * 179.97438 * 6 5 4 8 8 C 1.38384 * 120.29093 * 0.02562 * 7 6 5 9 9 C 1.37944 * 120.14550 * 359.74522 * 8 7 6 10 10 C 1.39559 * 120.07588 * 284.98780 * 5 4 2 11 11 C 1.47854 * 120.13980 * 359.97438 * 10 5 4 12 12 O 1.21549 * 119.99859 * 5.55128 * 11 10 5 13 13 N 1.34781 * 119.99607 * 185.55048 * 11 10 5 14 14 C 1.46504 * 119.99635 * 179.97438 * 13 11 10 15 15 H 1.08994 * 112.84917 * 23.80241 * 14 13 11 16 16 C 1.53778 * 113.61107 * 155.00075 * 14 13 11 17 17 C 1.53785 * 87.08223 * 89.11684 * 16 14 13 18 18 H 1.08998 * 113.61532 * 140.06139 * 17 16 14 19 19 N 1.46499 * 113.61362 * 270.88241 * 17 16 14 20 20 C 1.36935 * 119.99879 * 203.46504 * 19 17 16 21 21 H 1.07989 * 120.00241 * 0.02562 * 20 19 17 22 22 C 1.38819 * 119.99600 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99670 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00066 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47156 * 269.99338 * 24 22 20 26 26 H 1.48495 * 109.47257 * 29.99966 * 24 22 20 27 27 H 1.48508 * 109.46951 * 149.99571 * 24 22 20 28 28 C 1.53790 * 87.17061 * 25.47130 * 17 16 14 29 29 H 1.09004 * 109.47229 * 296.04765 * 1 2 3 30 30 H 1.08998 * 109.47109 * 56.04925 * 1 2 3 31 31 H 1.09004 * 109.47431 * 176.04770 * 1 2 3 32 32 H 1.09002 * 109.47131 * 181.70542 * 3 2 1 33 33 H 1.09004 * 109.46895 * 301.70168 * 3 2 1 34 34 H 1.09001 * 109.46948 * 61.70235 * 3 2 1 35 35 H 1.09006 * 109.47292 * 45.41843 * 4 2 1 36 36 H 1.09003 * 109.47330 * 285.42424 * 4 2 1 37 37 H 1.07994 * 119.92956 * 359.97438 * 6 5 4 38 38 H 1.07992 * 119.85751 * 180.02562 * 7 6 5 39 39 H 1.07998 * 119.92694 * 179.97438 * 8 7 6 40 40 H 1.08000 * 120.07136 * 180.27252 * 9 8 7 41 41 H 0.96993 * 120.00089 * 359.97438 * 13 11 10 42 42 H 1.08997 * 113.61895 * 334.57053 * 16 14 13 43 43 H 1.09001 * 113.60975 * 203.66103 * 16 14 13 44 44 H 0.96999 * 120.00172 * 23.47344 * 19 17 16 45 45 H 0.97001 * 120.00167 * 180.02562 * 23 22 20 46 46 H 1.09004 * 113.61222 * 89.08011 * 28 17 16 47 47 H 1.08996 * 113.61038 * 219.97594 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.4591 -1.0493 0.9182 6 6 4.4131 -0.3458 1.6245 7 6 5.7572 -0.6051 1.4246 8 6 6.1542 -1.5702 0.5159 9 6 5.2106 -2.2841 -0.1933 10 6 3.8528 -2.0242 0.0005 11 6 2.8360 -2.7826 -0.7591 12 8 1.6604 -2.4897 -0.6607 13 7 3.2127 -3.7987 -1.5605 14 6 2.2051 -4.5505 -2.3127 15 1 1.2909 -3.9814 -2.4813 16 6 2.7569 -5.2200 -3.5824 17 6 3.0858 -6.4377 -2.7025 18 1 2.8831 -7.3933 -3.1861 19 7 4.4169 -6.3793 -2.0936 20 6 5.0422 -7.5331 -1.7026 21 1 4.5542 -8.4861 -1.8435 22 6 6.3038 -7.4777 -1.1260 23 7 6.9049 -8.5868 -0.7507 24 14 7.1481 -5.8293 -0.8829 25 1 7.9561 -5.5048 -2.0859 26 1 6.1238 -4.7744 -0.6752 27 1 8.0357 -5.8983 0.3057 28 6 1.9590 -5.9697 -1.7663 29 1 -0.3634 0.4513 0.9233 30 1 -0.3633 0.5739 -0.8525 31 1 -0.3634 -1.0252 -0.0708 32 1 3.0846 1.3425 -0.0306 33 1 1.6215 1.9041 -0.8744 34 1 1.6708 1.8852 0.9049 35 1 1.4521 -1.7070 1.2247 36 1 1.8704 -0.1883 2.0536 37 1 4.1098 0.4090 2.3349 38 1 6.4998 -0.0520 1.9802 39 1 7.2051 -1.7676 0.3642 40 1 5.5217 -3.0401 -0.8990 41 1 4.1508 -4.0321 -1.6392 42 1 3.6384 -4.7247 -3.9894 43 1 1.9959 -5.4193 -4.3368 44 1 4.8554 -5.5233 -1.9672 45 1 7.7863 -8.5482 -0.3474 46 1 0.9802 -6.3736 -2.0252 47 1 2.1968 -6.0791 -0.7083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023130324.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:13 Heat of formation + Delta-G solvation = 32.927855 kcal Electronic energy + Delta-G solvation = -27648.363496 eV Core-core repulsion = 24025.164386 eV Total energy + Delta-G solvation = -3623.199110 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.63558 -40.35922 -38.75156 -37.91528 -35.54767 -34.29345 -32.71174 -32.68294 -31.74296 -28.39656 -27.86117 -26.56860 -26.39764 -25.16537 -23.76876 -23.37018 -22.04197 -21.45774 -20.72023 -19.43398 -18.69329 -17.31619 -16.89776 -16.73895 -16.49012 -16.38214 -16.22694 -15.82344 -15.66194 -15.48987 -15.40409 -15.10676 -14.63054 -14.40356 -13.84914 -13.78046 -13.68868 -13.47470 -13.25268 -13.19430 -12.96129 -12.87861 -12.68998 -12.60908 -12.46780 -12.34009 -12.15642 -11.88817 -11.81522 -11.67557 -11.18102 -10.87248 -10.57433 -10.04560 -9.90821 -9.75132 -9.33474 -9.10567 -8.03665 -5.38728 -0.11844 0.30690 1.27038 1.38776 1.44711 1.94383 2.17736 2.46087 2.79130 3.25538 3.28703 3.44282 3.68581 3.75493 3.78413 3.79671 3.89915 4.09888 4.24573 4.26785 4.31057 4.34421 4.42856 4.46434 4.55270 4.58796 4.74880 4.79349 4.81599 4.86267 4.88910 4.96567 4.99280 5.01645 5.04758 5.10435 5.20613 5.30765 5.32527 5.43920 5.46114 5.69200 5.79443 5.89457 6.17080 6.20282 6.27704 6.53732 7.04004 7.28602 7.79353 7.96815 9.17258 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013642 B = 0.004922 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.924462 B = 5687.420550 C = 7322.369669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.541 5.541 3 C 0.024 3.976 4 C 0.105 3.895 5 C -0.034 4.034 6 C -0.122 4.122 7 C -0.086 4.086 8 C -0.136 4.136 9 C -0.110 4.110 10 C -0.137 4.137 11 C 0.551 3.449 12 O -0.529 6.529 13 N -0.711 5.711 14 C 0.127 3.873 15 H 0.103 0.897 16 C -0.144 4.144 17 C 0.146 3.854 18 H 0.069 0.931 19 N -0.730 5.730 20 C -0.234 4.234 21 H 0.059 0.941 22 C -0.064 4.064 23 N -0.983 5.983 24 Si 0.946 3.054 25 H -0.274 1.274 26 H -0.240 1.240 27 H -0.296 1.296 28 C -0.177 4.177 29 H 0.029 0.971 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.034 0.966 35 H 0.075 0.925 36 H 0.050 0.950 37 H 0.153 0.847 38 H 0.161 0.839 39 H 0.144 0.856 40 H 0.116 0.884 41 H 0.393 0.607 42 H 0.070 0.930 43 H 0.130 0.870 44 H 0.360 0.640 45 H 0.257 0.743 46 H 0.108 0.892 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.121 22.804 1.896 24.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.265 5.265 3 C -0.124 4.124 4 C -0.023 4.023 5 C -0.036 4.036 6 C -0.141 4.141 7 C -0.104 4.104 8 C -0.154 4.154 9 C -0.128 4.128 10 C -0.140 4.140 11 C 0.340 3.660 12 O -0.406 6.406 13 N -0.364 5.364 14 C 0.022 3.978 15 H 0.121 0.879 16 C -0.183 4.183 17 C 0.037 3.963 18 H 0.087 0.913 19 N -0.373 5.373 20 C -0.364 4.364 21 H 0.077 0.923 22 C -0.256 4.256 23 N -0.633 5.633 24 Si 0.773 3.227 25 H -0.200 1.200 26 H -0.165 1.165 27 H -0.223 1.223 28 C -0.218 4.218 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.171 0.829 38 H 0.179 0.821 39 H 0.162 0.838 40 H 0.134 0.866 41 H 0.230 0.770 42 H 0.088 0.912 43 H 0.149 0.851 44 H 0.195 0.805 45 H 0.066 0.934 46 H 0.126 0.874 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.792 22.545 1.541 24.248 hybrid contribution 1.109 0.168 0.951 1.470 sum -7.684 22.713 2.492 24.107 Atomic orbital electron populations 1.22203 0.86480 1.01771 1.00233 1.61704 1.08492 1.13370 1.42903 1.22445 1.00593 0.88404 1.00921 1.20943 0.90862 0.98908 0.91546 1.20020 0.96398 0.93326 0.93831 1.21344 0.92499 1.00050 1.00182 1.21683 0.96519 0.96058 0.96097 1.21420 1.00264 0.96724 0.96995 1.21654 0.92613 0.98899 0.99683 1.19860 0.93101 1.00150 1.00898 1.18493 0.88716 0.79584 0.79255 1.90697 1.18366 1.67587 1.63995 1.45927 1.10664 1.33452 1.46394 1.21870 0.92033 0.91487 0.92417 0.87886 1.23777 1.02211 0.95941 0.96392 1.21482 0.83829 0.97766 0.93256 0.91309 1.42492 1.17023 1.04183 1.73641 1.19062 0.98547 0.87008 1.31829 0.92341 1.25535 0.98168 1.00572 1.01300 1.69885 1.16185 1.28273 1.48949 0.85628 0.78939 0.80637 0.77465 1.20040 1.16506 1.22299 1.24227 1.01002 0.96809 0.99787 0.95285 0.91161 0.92551 0.91953 0.91207 0.94752 0.90653 0.93197 0.82907 0.82096 0.83848 0.86577 0.76957 0.91156 0.85142 0.80518 0.93373 0.87392 0.94111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.90 9.30 127.69 1.19 2.08 16 2 N -0.54 -13.22 3.77 -953.46 -3.59 -16.81 16 3 C 0.02 0.46 9.41 127.69 1.20 1.66 16 4 C 0.10 2.60 4.11 85.56 0.35 2.96 16 5 C -0.03 -0.88 4.65 -19.61 -0.09 -0.97 16 6 C -0.12 -2.38 9.10 22.23 0.20 -2.18 16 7 C -0.09 -1.56 10.04 22.33 0.22 -1.34 16 8 C -0.14 -3.13 10.03 22.23 0.22 -2.90 16 9 C -0.11 -3.17 9.47 22.53 0.21 -2.96 16 10 C -0.14 -4.16 5.87 -20.09 -0.12 -4.28 16 11 C 0.55 18.68 7.72 86.79 0.67 19.35 16 12 O -0.53 -18.82 11.40 -3.87 -0.04 -18.86 16 13 N -0.71 -23.71 5.09 -442.47 -2.25 -25.96 16 14 C 0.13 3.89 4.33 45.61 0.20 4.09 16 15 H 0.10 3.05 7.46 -2.39 -0.02 3.03 16 16 C -0.14 -4.01 7.58 31.12 0.24 -3.77 16 17 C 0.15 5.33 4.55 45.52 0.21 5.53 16 18 H 0.07 2.56 8.11 -2.39 -0.02 2.54 16 19 N -0.73 -32.84 4.97 -320.43 -1.59 -34.43 16 20 C -0.23 -13.09 10.45 84.04 0.88 -12.21 16 21 H 0.06 3.61 8.06 -2.92 -0.02 3.59 16 22 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 23 N -0.98 -62.47 13.97 21.65 0.30 -62.17 16 24 Si 0.95 43.19 27.73 68.60 1.90 45.09 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 26 H -0.24 -9.42 4.14 99.48 0.41 -9.01 16 27 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 28 C -0.18 -5.89 7.70 31.22 0.24 -5.65 16 29 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.44 7.57 -2.38 -0.02 1.43 16 32 H 0.06 1.21 6.94 -2.39 -0.02 1.19 16 33 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.08 2.26 6.31 -2.38 -0.02 2.24 16 36 H 0.05 1.02 7.88 -2.39 -0.02 1.00 16 37 H 0.15 2.04 8.00 -2.91 -0.02 2.02 16 38 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 39 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 40 H 0.12 3.53 4.42 -2.91 -0.01 3.51 16 41 H 0.39 13.50 3.94 -92.71 -0.37 13.14 16 42 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 43 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 44 H 0.36 15.23 3.23 -92.71 -0.30 14.93 16 45 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 46 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 47 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -70.94 366.57 1.04 -69.90 By element: Atomic # 1 Polarization: 47.09 SS G_CDS: 0.02 Total: 47.11 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 6.29 Total: -3.87 kcal Atomic # 7 Polarization: -132.24 SS G_CDS: -7.13 Total: -139.38 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.04 Total: -18.86 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.90 Total: 45.09 kcal Total: -70.94 1.04 -69.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023130324.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.827 kcal (2) G-P(sol) polarization free energy of solvation -70.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds