Wall clock time and date at job start Tue Mar 31 2020 11:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36935 * 119.99914 * 2 1 4 4 H 1.08003 * 120.00353 * 140.65954 * 3 2 1 5 5 C 1.38817 * 119.99874 * 320.65212 * 3 2 1 6 6 N 1.31617 * 120.00118 * 158.85125 * 5 3 2 7 7 Si 1.86804 * 119.99890 * 338.85227 * 5 3 2 8 8 H 1.48500 * 109.47177 * 94.05557 * 7 5 3 9 9 H 1.48494 * 109.47135 * 214.05884 * 7 5 3 10 10 H 1.48503 * 109.46935 * 334.05833 * 7 5 3 11 11 C 1.46505 * 120.00135 * 179.97438 * 2 1 3 12 12 H 1.08993 * 109.49688 * 180.02562 * 11 2 1 13 13 C 1.53042 * 109.49266 * 60.00384 * 11 2 1 14 14 C 1.53045 * 109.53631 * 178.68064 * 13 11 2 15 15 C 1.53195 * 109.30833 * 61.36673 * 14 13 11 16 16 N 1.46927 * 108.77963 * 305.36467 * 15 14 13 17 17 C 1.34779 * 120.62921 * 233.58890 * 16 15 14 18 18 O 1.21697 * 119.99229 * 184.63429 * 17 16 15 19 19 C 1.46671 * 120.00433 * 4.63568 * 17 16 15 20 20 N 1.37653 * 126.23670 * 101.93624 * 19 17 16 21 21 H 0.97001 * 125.67493 * 0.02562 * 20 19 17 22 22 C 1.35530 * 108.64508 * 180.26794 * 20 19 17 23 23 C 1.35453 * 108.87133 * 359.56281 * 22 20 19 24 24 C 1.37870 * 126.22924 * 281.94321 * 19 17 16 25 25 C 1.50697 * 126.46172 * 0.03317 * 24 19 17 26 26 C 1.53006 * 117.49796 * 188.75149 * 25 24 19 27 27 C 1.52998 * 117.50349 * 120.08789 * 25 24 19 28 28 C 1.46926 * 118.73842 * 53.85794 * 16 15 14 29 29 H 1.09002 * 109.47472 * 264.57005 * 1 2 3 30 30 H 1.08997 * 109.46776 * 24.57552 * 1 2 3 31 31 H 1.09004 * 109.46507 * 144.57397 * 1 2 3 32 32 H 0.96996 * 119.99804 * 179.97438 * 6 5 3 33 33 H 1.09003 * 109.45548 * 58.66456 * 13 11 2 34 34 H 1.08999 * 109.46164 * 298.70303 * 13 11 2 35 35 H 1.09000 * 109.49967 * 301.42049 * 14 13 11 36 36 H 1.08995 * 109.52532 * 181.33540 * 14 13 11 37 37 H 1.09005 * 109.58493 * 185.57835 * 15 14 13 38 38 H 1.09001 * 109.58673 * 65.15507 * 15 14 13 39 39 H 1.08001 * 125.55916 * 179.70639 * 22 20 19 40 40 H 1.07997 * 126.06844 * 180.16438 * 23 22 20 41 41 H 1.09003 * 115.54894 * 334.41325 * 25 24 19 42 42 H 1.08988 * 117.49931 * 359.97438 * 26 25 24 43 43 H 1.09005 * 117.49641 * 145.01951 * 26 25 24 44 44 H 1.08998 * 117.50399 * 214.97972 * 27 25 24 45 45 H 1.09008 * 117.49705 * 0.02562 * 27 25 24 46 46 H 1.09004 * 109.58368 * 65.92516 * 28 16 15 47 47 H 1.08990 * 109.58735 * 186.35282 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0462 1.2920 0.5929 5 6 1.6916 2.2518 -0.7622 6 7 2.0648 3.4793 -0.4686 7 14 0.5453 1.9440 -2.2047 8 1 -0.8632 2.0920 -1.7581 9 1 0.8292 2.9268 -3.2811 10 1 0.7586 0.5683 -2.7217 11 6 2.1976 -1.2687 0.0006 12 1 3.2692 -1.0700 0.0009 13 6 1.8283 -2.0722 -1.2485 14 6 2.6177 -3.3832 -1.2657 15 6 2.2497 -4.2123 -0.0312 16 7 2.4653 -3.3938 1.1698 17 6 3.2357 -3.8453 2.1793 18 8 3.3386 -3.1959 3.2034 19 6 3.9499 -5.1191 2.0437 20 7 5.2881 -5.2757 1.7613 21 1 5.9237 -4.5572 1.6174 22 6 5.5685 -6.6007 1.7124 23 6 4.4357 -7.2980 1.9682 24 6 3.4033 -6.3779 2.1758 25 6 1.9643 -6.7014 2.4849 26 6 1.6176 -8.1605 2.7883 27 6 1.1908 -7.5324 1.4592 28 6 1.8203 -2.0762 1.2518 29 1 -0.3634 -0.0972 1.0230 30 1 -0.3633 0.9346 -0.4274 31 1 -0.3632 -0.8375 -0.5957 32 1 1.7450 4.2240 -1.0014 33 1 2.0700 -1.4912 -2.1386 34 1 0.7606 -2.2913 -1.2369 35 1 3.6856 -3.1651 -1.2522 36 1 2.3723 -3.9445 -2.1672 37 1 2.8802 -5.1003 0.0139 38 1 1.2021 -4.5080 -0.0886 39 1 6.5375 -7.0304 1.5058 40 1 4.3449 -8.3736 2.0011 41 1 1.4148 -5.9307 3.0256 42 1 2.4303 -8.8863 2.7639 43 1 0.8398 -8.3496 3.5282 44 1 0.1325 -7.3086 1.3251 45 1 1.7230 -7.8454 0.5608 46 1 0.7383 -2.2013 1.2968 47 1 2.1673 -1.5544 2.1436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027438720.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:08 Heat of formation + Delta-G solvation = 65.837904 kcal Electronic energy + Delta-G solvation = -27583.078444 eV Core-core repulsion = 23961.306421 eV Total energy + Delta-G solvation = -3621.772023 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.55693 -39.53031 -37.46847 -37.12350 -35.25269 -32.39969 -31.57775 -30.90012 -30.14453 -28.86882 -26.18055 -25.38785 -23.89900 -23.19446 -22.54446 -21.93863 -21.43090 -20.52174 -19.13906 -18.66580 -17.81008 -16.84067 -16.50163 -15.89132 -15.57691 -15.16053 -14.90303 -14.37331 -14.19869 -14.08235 -13.98411 -13.71830 -13.56621 -13.14829 -13.00182 -12.55512 -12.52863 -12.37265 -12.28046 -12.14708 -11.71649 -11.63167 -11.31435 -11.04448 -10.95973 -10.68511 -10.53956 -10.51222 -10.38229 -10.16782 -9.98431 -9.90114 -9.60596 -8.84084 -8.70116 -8.38072 -8.13709 -6.83213 -6.02307 -3.47394 1.77880 2.34485 2.59602 3.05315 3.28782 3.43342 3.45792 3.48559 3.89108 4.49031 4.52462 4.60046 4.78378 4.83614 4.86014 4.98212 5.10265 5.14565 5.26896 5.29174 5.32702 5.34456 5.50044 5.51373 5.63080 5.65954 5.76870 5.79232 5.86820 5.95515 5.99498 6.02280 6.09422 6.20634 6.21708 6.31552 6.36579 6.51062 6.57376 6.66323 6.71701 6.81006 6.83370 6.86352 7.28589 7.49652 8.02338 8.20241 8.36728 8.94281 9.66494 10.06817 11.12996 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022113 B = 0.003480 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.945271 B = 8044.700756 C = 8373.684960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.601 5.601 3 C -0.272 4.272 4 H 0.078 0.922 5 C 0.037 3.963 6 N -0.900 5.900 7 Si 0.884 3.116 8 H -0.286 1.286 9 H -0.302 1.302 10 H -0.268 1.268 11 C 0.169 3.831 12 H 0.074 0.926 13 C -0.139 4.139 14 C -0.131 4.131 15 C 0.110 3.890 16 N -0.591 5.591 17 C 0.584 3.416 18 O -0.532 6.532 19 C -0.020 4.020 20 N -0.528 5.528 21 H 0.420 0.580 22 C 0.005 3.995 23 C -0.198 4.198 24 C -0.088 4.088 25 C -0.086 4.086 26 C -0.172 4.172 27 C -0.170 4.170 28 C 0.099 3.901 29 H 0.016 0.984 30 H 0.050 0.950 31 H 0.028 0.972 32 H 0.264 0.736 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.169 0.831 40 H 0.138 0.862 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.064 0.936 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.257 -24.739 0.317 24.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.324 5.324 3 C -0.400 4.400 4 H 0.096 0.904 5 C -0.164 4.164 6 N -0.541 5.541 7 Si 0.714 3.286 8 H -0.214 1.214 9 H -0.230 1.230 10 H -0.193 1.193 11 C 0.060 3.940 12 H 0.092 0.908 13 C -0.178 4.178 14 C -0.169 4.169 15 C -0.013 4.013 16 N -0.323 5.323 17 C 0.370 3.630 18 O -0.407 6.407 19 C -0.135 4.135 20 N -0.122 5.122 21 H 0.258 0.742 22 C -0.129 4.129 23 C -0.223 4.223 24 C -0.096 4.096 25 C -0.105 4.105 26 C -0.209 4.209 27 C -0.207 4.207 28 C -0.024 4.024 29 H 0.034 0.966 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.186 0.814 40 H 0.156 0.844 41 H 0.123 0.877 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.082 0.918 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.399 -24.010 0.809 24.143 hybrid contribution -0.364 0.271 -0.991 1.090 sum 2.035 -23.739 -0.182 23.827 Atomic orbital electron populations 1.21362 0.84928 0.99382 0.98085 1.44012 1.00488 1.01451 1.86461 1.18790 1.10899 0.87303 1.23049 0.90428 1.25520 0.98040 0.95220 0.97594 1.69864 1.46700 0.98114 1.39372 0.86849 0.80126 0.77879 0.83775 1.21424 1.23032 1.19259 1.20823 0.96987 0.85668 0.90496 0.90812 1.22154 0.99568 0.95191 1.00894 1.21913 1.00943 0.97113 0.96968 1.21775 1.01659 0.93738 0.84120 1.48096 1.48309 1.18706 1.17223 1.17189 0.79351 0.83134 0.83365 1.90859 1.64157 1.57460 1.28268 1.19909 0.84631 0.94585 1.14366 1.41788 1.08096 1.08089 1.54262 0.74214 1.21861 1.00395 0.82151 1.08537 1.20583 0.92006 0.98998 1.10701 1.18871 0.93828 0.90399 1.06473 1.20300 0.91855 0.94709 1.03634 1.22946 1.03334 0.95334 0.99264 1.23002 1.00238 1.03861 0.93612 1.22481 0.96847 0.81097 1.02011 0.96601 0.93178 0.95303 0.92638 0.91399 0.92387 0.91841 0.91192 0.89663 0.91343 0.81397 0.84393 0.87660 0.88601 0.88807 0.88742 0.88599 0.91756 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.29 8.31 59.85 0.50 2.79 16 2 N -0.60 -14.03 2.34 -173.08 -0.41 -14.44 16 3 C -0.27 -7.58 9.82 -15.06 -0.15 -7.73 16 4 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 5 C 0.04 1.06 5.28 -17.43 -0.09 0.97 16 6 N -0.90 -27.45 13.97 55.49 0.78 -26.67 16 7 Si 0.88 21.96 25.10 -169.99 -4.27 17.69 16 8 H -0.29 -6.94 6.64 56.52 0.38 -6.56 16 9 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 C 0.17 3.26 2.76 -67.58 -0.19 3.07 16 12 H 0.07 1.54 7.89 -51.93 -0.41 1.13 16 13 C -0.14 -2.26 5.10 -26.69 -0.14 -2.40 16 14 C -0.13 -1.64 6.08 -26.61 -0.16 -1.80 16 15 C 0.11 1.32 6.33 -3.71 -0.02 1.30 16 16 N -0.59 -8.88 2.97 -174.04 -0.52 -9.39 16 17 C 0.58 9.43 7.33 -12.86 -0.09 9.34 16 18 O -0.53 -10.75 16.54 5.19 0.09 -10.66 16 19 C -0.02 -0.26 5.16 -81.98 -0.42 -0.68 16 20 N -0.53 -5.46 6.10 -9.39 -0.06 -5.51 16 21 H 0.42 3.63 8.96 -40.82 -0.37 3.27 16 22 C 0.00 0.04 11.89 -16.91 -0.20 -0.16 16 23 C -0.20 -1.91 10.15 -39.98 -0.41 -2.31 16 24 C -0.09 -1.02 5.23 -104.16 -0.54 -1.57 16 25 C -0.09 -0.92 6.01 -91.77 -0.55 -1.48 16 26 C -0.17 -1.45 10.04 -26.69 -0.27 -1.72 16 27 C -0.17 -1.44 10.24 -26.69 -0.27 -1.72 16 28 C 0.10 1.75 5.80 -3.49 -0.02 1.73 16 29 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 1.17 3.67 -51.93 -0.19 0.98 16 31 H 0.03 0.54 6.48 -51.93 -0.34 0.20 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.06 0.92 6.76 -51.93 -0.35 0.57 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.95 5.86 -51.93 -0.30 0.64 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.14 1.06 7.25 -52.49 -0.38 0.68 16 41 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.10 0.73 7.03 -51.94 -0.37 0.37 16 43 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 46 H 0.06 1.09 7.52 -51.93 -0.39 0.70 16 47 H 0.09 1.90 7.03 -51.93 -0.36 1.53 16 LS Contribution 369.57 15.07 5.57 5.57 Total: -1.00 -33.18 369.57 -9.12 -42.30 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -7.27 Total: 3.47 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -3.03 Total: -2.35 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: -0.20 Total: -56.01 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.27 Total: 17.69 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.18 -9.12 -42.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027438720.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.140 kcal (2) G-P(sol) polarization free energy of solvation -33.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds