Wall clock time and date at job start Tue Mar 31 2020 11:54:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.36935 * 119.99914 * 2 1
4 4 H 1.08003 * 120.00353 * 140.65954 * 3 2 1
5 5 C 1.38817 * 119.99874 * 320.65212 * 3 2 1
6 6 N 1.31617 * 120.00118 * 158.85125 * 5 3 2
7 7 Si 1.86804 * 119.99890 * 338.85227 * 5 3 2
8 8 H 1.48500 * 109.47177 * 94.05557 * 7 5 3
9 9 H 1.48494 * 109.47135 * 214.05884 * 7 5 3
10 10 H 1.48503 * 109.46935 * 334.05833 * 7 5 3
11 11 C 1.46505 * 120.00135 * 179.97438 * 2 1 3
12 12 H 1.08993 * 109.49688 * 180.02562 * 11 2 1
13 13 C 1.53042 * 109.49266 * 60.00384 * 11 2 1
14 14 C 1.53045 * 109.53631 * 178.68064 * 13 11 2
15 15 C 1.53195 * 109.30833 * 61.36673 * 14 13 11
16 16 N 1.46927 * 108.77963 * 305.36467 * 15 14 13
17 17 C 1.34779 * 120.62921 * 233.58890 * 16 15 14
18 18 O 1.21697 * 119.99229 * 184.63429 * 17 16 15
19 19 C 1.46671 * 120.00433 * 4.63568 * 17 16 15
20 20 N 1.37653 * 126.23670 * 101.93624 * 19 17 16
21 21 H 0.97001 * 125.67493 * 0.02562 * 20 19 17
22 22 C 1.35530 * 108.64508 * 180.26794 * 20 19 17
23 23 C 1.35453 * 108.87133 * 359.56281 * 22 20 19
24 24 C 1.37870 * 126.22924 * 281.94321 * 19 17 16
25 25 C 1.50697 * 126.46172 * 0.03317 * 24 19 17
26 26 C 1.53006 * 117.49796 * 188.75149 * 25 24 19
27 27 C 1.52998 * 117.50349 * 120.08789 * 25 24 19
28 28 C 1.46926 * 118.73842 * 53.85794 * 16 15 14
29 29 H 1.09002 * 109.47472 * 264.57005 * 1 2 3
30 30 H 1.08997 * 109.46776 * 24.57552 * 1 2 3
31 31 H 1.09004 * 109.46507 * 144.57397 * 1 2 3
32 32 H 0.96996 * 119.99804 * 179.97438 * 6 5 3
33 33 H 1.09003 * 109.45548 * 58.66456 * 13 11 2
34 34 H 1.08999 * 109.46164 * 298.70303 * 13 11 2
35 35 H 1.09000 * 109.49967 * 301.42049 * 14 13 11
36 36 H 1.08995 * 109.52532 * 181.33540 * 14 13 11
37 37 H 1.09005 * 109.58493 * 185.57835 * 15 14 13
38 38 H 1.09001 * 109.58673 * 65.15507 * 15 14 13
39 39 H 1.08001 * 125.55916 * 179.70639 * 22 20 19
40 40 H 1.07997 * 126.06844 * 180.16438 * 23 22 20
41 41 H 1.09003 * 115.54894 * 334.41325 * 25 24 19
42 42 H 1.08988 * 117.49931 * 359.97438 * 26 25 24
43 43 H 1.09005 * 117.49641 * 145.01951 * 26 25 24
44 44 H 1.08998 * 117.50399 * 214.97972 * 27 25 24
45 45 H 1.09008 * 117.49705 * 0.02562 * 27 25 24
46 46 H 1.09004 * 109.58368 * 65.92516 * 28 16 15
47 47 H 1.08990 * 109.58735 * 186.35282 * 28 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.0462 1.2920 0.5929
5 6 1.6916 2.2518 -0.7622
6 7 2.0648 3.4793 -0.4686
7 14 0.5453 1.9440 -2.2047
8 1 -0.8632 2.0920 -1.7581
9 1 0.8292 2.9268 -3.2811
10 1 0.7586 0.5683 -2.7217
11 6 2.1976 -1.2687 0.0006
12 1 3.2692 -1.0700 0.0009
13 6 1.8283 -2.0722 -1.2485
14 6 2.6177 -3.3832 -1.2657
15 6 2.2497 -4.2123 -0.0312
16 7 2.4653 -3.3938 1.1698
17 6 3.2357 -3.8453 2.1793
18 8 3.3386 -3.1959 3.2034
19 6 3.9499 -5.1191 2.0437
20 7 5.2881 -5.2757 1.7613
21 1 5.9237 -4.5572 1.6174
22 6 5.5685 -6.6007 1.7124
23 6 4.4357 -7.2980 1.9682
24 6 3.4033 -6.3779 2.1758
25 6 1.9643 -6.7014 2.4849
26 6 1.6176 -8.1605 2.7883
27 6 1.1908 -7.5324 1.4592
28 6 1.8203 -2.0762 1.2518
29 1 -0.3634 -0.0972 1.0230
30 1 -0.3633 0.9346 -0.4274
31 1 -0.3632 -0.8375 -0.5957
32 1 1.7450 4.2240 -1.0014
33 1 2.0700 -1.4912 -2.1386
34 1 0.7606 -2.2913 -1.2369
35 1 3.6856 -3.1651 -1.2522
36 1 2.3723 -3.9445 -2.1672
37 1 2.8802 -5.1003 0.0139
38 1 1.2021 -4.5080 -0.0886
39 1 6.5375 -7.0304 1.5058
40 1 4.3449 -8.3736 2.0011
41 1 1.4148 -5.9307 3.0256
42 1 2.4303 -8.8863 2.7639
43 1 0.8398 -8.3496 3.5282
44 1 0.1325 -7.3086 1.3251
45 1 1.7230 -7.8454 0.5608
46 1 0.7383 -2.2013 1.2968
47 1 2.1673 -1.5544 2.1436
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001027438720.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:54:08
Heat of formation + Delta-G solvation = 65.837904 kcal
Electronic energy + Delta-G solvation = -27583.078444 eV
Core-core repulsion = 23961.306421 eV
Total energy + Delta-G solvation = -3621.772023 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 317.184 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.55693 -39.53031 -37.46847 -37.12350 -35.25269 -32.39969 -31.57775 -30.90012
-30.14453 -28.86882 -26.18055 -25.38785 -23.89900 -23.19446 -22.54446 -21.93863
-21.43090 -20.52174 -19.13906 -18.66580 -17.81008 -16.84067 -16.50163 -15.89132
-15.57691 -15.16053 -14.90303 -14.37331 -14.19869 -14.08235 -13.98411 -13.71830
-13.56621 -13.14829 -13.00182 -12.55512 -12.52863 -12.37265 -12.28046 -12.14708
-11.71649 -11.63167 -11.31435 -11.04448 -10.95973 -10.68511 -10.53956 -10.51222
-10.38229 -10.16782 -9.98431 -9.90114 -9.60596 -8.84084 -8.70116 -8.38072
-8.13709 -6.83213 -6.02307 -3.47394 1.77880 2.34485 2.59602 3.05315
3.28782 3.43342 3.45792 3.48559 3.89108 4.49031 4.52462 4.60046
4.78378 4.83614 4.86014 4.98212 5.10265 5.14565 5.26896 5.29174
5.32702 5.34456 5.50044 5.51373 5.63080 5.65954 5.76870 5.79232
5.86820 5.95515 5.99498 6.02280 6.09422 6.20634 6.21708 6.31552
6.36579 6.51062 6.57376 6.66323 6.71701 6.81006 6.83370 6.86352
7.28589 7.49652 8.02338 8.20241 8.36728 8.94281 9.66494 10.06817
11.12996
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.022113 B = 0.003480 C = 0.003343
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1265.945271 B = 8044.700756 C = 8373.684960
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.107 3.893
2 N -0.601 5.601
3 C -0.272 4.272
4 H 0.078 0.922
5 C 0.037 3.963
6 N -0.900 5.900
7 Si 0.884 3.116
8 H -0.286 1.286
9 H -0.302 1.302
10 H -0.268 1.268
11 C 0.169 3.831
12 H 0.074 0.926
13 C -0.139 4.139
14 C -0.131 4.131
15 C 0.110 3.890
16 N -0.591 5.591
17 C 0.584 3.416
18 O -0.532 6.532
19 C -0.020 4.020
20 N -0.528 5.528
21 H 0.420 0.580
22 C 0.005 3.995
23 C -0.198 4.198
24 C -0.088 4.088
25 C -0.086 4.086
26 C -0.172 4.172
27 C -0.170 4.170
28 C 0.099 3.901
29 H 0.016 0.984
30 H 0.050 0.950
31 H 0.028 0.972
32 H 0.264 0.736
33 H 0.067 0.933
34 H 0.057 0.943
35 H 0.063 0.937
36 H 0.069 0.931
37 H 0.085 0.915
38 H 0.068 0.932
39 H 0.169 0.831
40 H 0.138 0.862
41 H 0.105 0.895
42 H 0.096 0.904
43 H 0.093 0.907
44 H 0.094 0.906
45 H 0.096 0.904
46 H 0.064 0.936
47 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.257 -24.739 0.317 24.844
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.038 4.038
2 N -0.324 5.324
3 C -0.400 4.400
4 H 0.096 0.904
5 C -0.164 4.164
6 N -0.541 5.541
7 Si 0.714 3.286
8 H -0.214 1.214
9 H -0.230 1.230
10 H -0.193 1.193
11 C 0.060 3.940
12 H 0.092 0.908
13 C -0.178 4.178
14 C -0.169 4.169
15 C -0.013 4.013
16 N -0.323 5.323
17 C 0.370 3.630
18 O -0.407 6.407
19 C -0.135 4.135
20 N -0.122 5.122
21 H 0.258 0.742
22 C -0.129 4.129
23 C -0.223 4.223
24 C -0.096 4.096
25 C -0.105 4.105
26 C -0.209 4.209
27 C -0.207 4.207
28 C -0.024 4.024
29 H 0.034 0.966
30 H 0.068 0.932
31 H 0.047 0.953
32 H 0.074 0.926
33 H 0.086 0.914
34 H 0.076 0.924
35 H 0.082 0.918
36 H 0.088 0.912
37 H 0.103 0.897
38 H 0.087 0.913
39 H 0.186 0.814
40 H 0.156 0.844
41 H 0.123 0.877
42 H 0.114 0.886
43 H 0.112 0.888
44 H 0.113 0.887
45 H 0.114 0.886
46 H 0.082 0.918
47 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 2.399 -24.010 0.809 24.143
hybrid contribution -0.364 0.271 -0.991 1.090
sum 2.035 -23.739 -0.182 23.827
Atomic orbital electron populations
1.21362 0.84928 0.99382 0.98085 1.44012 1.00488 1.01451 1.86461
1.18790 1.10899 0.87303 1.23049 0.90428 1.25520 0.98040 0.95220
0.97594 1.69864 1.46700 0.98114 1.39372 0.86849 0.80126 0.77879
0.83775 1.21424 1.23032 1.19259 1.20823 0.96987 0.85668 0.90496
0.90812 1.22154 0.99568 0.95191 1.00894 1.21913 1.00943 0.97113
0.96968 1.21775 1.01659 0.93738 0.84120 1.48096 1.48309 1.18706
1.17223 1.17189 0.79351 0.83134 0.83365 1.90859 1.64157 1.57460
1.28268 1.19909 0.84631 0.94585 1.14366 1.41788 1.08096 1.08089
1.54262 0.74214 1.21861 1.00395 0.82151 1.08537 1.20583 0.92006
0.98998 1.10701 1.18871 0.93828 0.90399 1.06473 1.20300 0.91855
0.94709 1.03634 1.22946 1.03334 0.95334 0.99264 1.23002 1.00238
1.03861 0.93612 1.22481 0.96847 0.81097 1.02011 0.96601 0.93178
0.95303 0.92638 0.91399 0.92387 0.91841 0.91192 0.89663 0.91343
0.81397 0.84393 0.87660 0.88601 0.88807 0.88742 0.88599 0.91756
0.88885
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.11 2.29 8.31 59.85 0.50 2.79 16
2 N -0.60 -14.03 2.34 -173.08 -0.41 -14.44 16
3 C -0.27 -7.58 9.82 -15.06 -0.15 -7.73 16
4 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16
5 C 0.04 1.06 5.28 -17.43 -0.09 0.97 16
6 N -0.90 -27.45 13.97 55.49 0.78 -26.67 16
7 Si 0.88 21.96 25.10 -169.99 -4.27 17.69 16
8 H -0.29 -6.94 6.64 56.52 0.38 -6.56 16
9 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16
10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16
11 C 0.17 3.26 2.76 -67.58 -0.19 3.07 16
12 H 0.07 1.54 7.89 -51.93 -0.41 1.13 16
13 C -0.14 -2.26 5.10 -26.69 -0.14 -2.40 16
14 C -0.13 -1.64 6.08 -26.61 -0.16 -1.80 16
15 C 0.11 1.32 6.33 -3.71 -0.02 1.30 16
16 N -0.59 -8.88 2.97 -174.04 -0.52 -9.39 16
17 C 0.58 9.43 7.33 -12.86 -0.09 9.34 16
18 O -0.53 -10.75 16.54 5.19 0.09 -10.66 16
19 C -0.02 -0.26 5.16 -81.98 -0.42 -0.68 16
20 N -0.53 -5.46 6.10 -9.39 -0.06 -5.51 16
21 H 0.42 3.63 8.96 -40.82 -0.37 3.27 16
22 C 0.00 0.04 11.89 -16.91 -0.20 -0.16 16
23 C -0.20 -1.91 10.15 -39.98 -0.41 -2.31 16
24 C -0.09 -1.02 5.23 -104.16 -0.54 -1.57 16
25 C -0.09 -0.92 6.01 -91.77 -0.55 -1.48 16
26 C -0.17 -1.45 10.04 -26.69 -0.27 -1.72 16
27 C -0.17 -1.44 10.24 -26.69 -0.27 -1.72 16
28 C 0.10 1.75 5.80 -3.49 -0.02 1.73 16
29 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16
30 H 0.05 1.17 3.67 -51.93 -0.19 0.98 16
31 H 0.03 0.54 6.48 -51.93 -0.34 0.20 16
32 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16
33 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16
34 H 0.06 0.92 6.76 -51.93 -0.35 0.57 16
35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16
36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
37 H 0.09 0.95 5.86 -51.93 -0.30 0.64 16
38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16
39 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16
40 H 0.14 1.06 7.25 -52.49 -0.38 0.68 16
41 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16
42 H 0.10 0.73 7.03 -51.94 -0.37 0.37 16
43 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16
44 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16
45 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16
46 H 0.06 1.09 7.52 -51.93 -0.39 0.70 16
47 H 0.09 1.90 7.03 -51.93 -0.36 1.53 16
LS Contribution 369.57 15.07 5.57 5.57
Total: -1.00 -33.18 369.57 -9.12 -42.30
By element:
Atomic # 1 Polarization: 10.74 SS G_CDS: -7.27 Total: 3.47 kcal
Atomic # 6 Polarization: 0.68 SS G_CDS: -3.03 Total: -2.35 kcal
Atomic # 7 Polarization: -55.81 SS G_CDS: -0.20 Total: -56.01 kcal
Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal
Atomic # 14 Polarization: 21.96 SS G_CDS: -4.27 Total: 17.69 kcal
Total LS contribution 5.57 Total: 5.57 kcal
Total: -33.18 -9.12 -42.30 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001027438720.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 108.140 kcal
(2) G-P(sol) polarization free energy of solvation -33.183 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.957 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.303 kcal
(6) G-S(sol) free energy of system = (1) + (5) 65.838 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds