Wall clock time and date at job start Tue Mar 31 2020 11:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36935 * 119.99914 * 2 1 4 4 H 1.08003 * 120.00353 * 140.65954 * 3 2 1 5 5 C 1.38817 * 119.99874 * 320.65212 * 3 2 1 6 6 N 1.31617 * 120.00118 * 158.85125 * 5 3 2 7 7 Si 1.86804 * 119.99890 * 338.85227 * 5 3 2 8 8 H 1.48500 * 109.47177 * 94.05557 * 7 5 3 9 9 H 1.48494 * 109.47135 * 214.05884 * 7 5 3 10 10 H 1.48503 * 109.46935 * 334.05833 * 7 5 3 11 11 C 1.46505 * 120.00135 * 179.97438 * 2 1 3 12 12 H 1.08993 * 109.49688 * 180.02562 * 11 2 1 13 13 C 1.53042 * 109.49266 * 60.00384 * 11 2 1 14 14 C 1.53045 * 109.53631 * 178.68064 * 13 11 2 15 15 C 1.53195 * 109.30833 * 61.36673 * 14 13 11 16 16 N 1.46927 * 108.77963 * 305.36467 * 15 14 13 17 17 C 1.34779 * 120.62921 * 233.58890 * 16 15 14 18 18 O 1.21697 * 119.99229 * 184.63429 * 17 16 15 19 19 C 1.46671 * 120.00433 * 4.63568 * 17 16 15 20 20 N 1.37653 * 126.23670 * 101.93624 * 19 17 16 21 21 H 0.97001 * 125.67493 * 0.02562 * 20 19 17 22 22 C 1.35530 * 108.64508 * 180.26794 * 20 19 17 23 23 C 1.35453 * 108.87133 * 359.56281 * 22 20 19 24 24 C 1.37870 * 126.22924 * 281.94321 * 19 17 16 25 25 C 1.50697 * 126.46172 * 0.03317 * 24 19 17 26 26 C 1.53006 * 117.49796 * 188.75149 * 25 24 19 27 27 C 1.52998 * 117.50349 * 120.08789 * 25 24 19 28 28 C 1.46926 * 118.73842 * 53.85794 * 16 15 14 29 29 H 1.09002 * 109.47472 * 264.57005 * 1 2 3 30 30 H 1.08997 * 109.46776 * 24.57552 * 1 2 3 31 31 H 1.09004 * 109.46507 * 144.57397 * 1 2 3 32 32 H 0.96996 * 119.99804 * 179.97438 * 6 5 3 33 33 H 1.09003 * 109.45548 * 58.66456 * 13 11 2 34 34 H 1.08999 * 109.46164 * 298.70303 * 13 11 2 35 35 H 1.09000 * 109.49967 * 301.42049 * 14 13 11 36 36 H 1.08995 * 109.52532 * 181.33540 * 14 13 11 37 37 H 1.09005 * 109.58493 * 185.57835 * 15 14 13 38 38 H 1.09001 * 109.58673 * 65.15507 * 15 14 13 39 39 H 1.08001 * 125.55916 * 179.70639 * 22 20 19 40 40 H 1.07997 * 126.06844 * 180.16438 * 23 22 20 41 41 H 1.09003 * 115.54894 * 334.41325 * 25 24 19 42 42 H 1.08988 * 117.49931 * 359.97438 * 26 25 24 43 43 H 1.09005 * 117.49641 * 145.01951 * 26 25 24 44 44 H 1.08998 * 117.50399 * 214.97972 * 27 25 24 45 45 H 1.09008 * 117.49705 * 0.02562 * 27 25 24 46 46 H 1.09004 * 109.58368 * 65.92516 * 28 16 15 47 47 H 1.08990 * 109.58735 * 186.35282 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0462 1.2920 0.5929 5 6 1.6916 2.2518 -0.7622 6 7 2.0648 3.4793 -0.4686 7 14 0.5453 1.9440 -2.2047 8 1 -0.8632 2.0920 -1.7581 9 1 0.8292 2.9268 -3.2811 10 1 0.7586 0.5683 -2.7217 11 6 2.1976 -1.2687 0.0006 12 1 3.2692 -1.0700 0.0009 13 6 1.8283 -2.0722 -1.2485 14 6 2.6177 -3.3832 -1.2657 15 6 2.2497 -4.2123 -0.0312 16 7 2.4653 -3.3938 1.1698 17 6 3.2357 -3.8453 2.1793 18 8 3.3386 -3.1959 3.2034 19 6 3.9499 -5.1191 2.0437 20 7 5.2881 -5.2757 1.7613 21 1 5.9237 -4.5572 1.6174 22 6 5.5685 -6.6007 1.7124 23 6 4.4357 -7.2980 1.9682 24 6 3.4033 -6.3779 2.1758 25 6 1.9643 -6.7014 2.4849 26 6 1.6176 -8.1605 2.7883 27 6 1.1908 -7.5324 1.4592 28 6 1.8203 -2.0762 1.2518 29 1 -0.3634 -0.0972 1.0230 30 1 -0.3633 0.9346 -0.4274 31 1 -0.3632 -0.8375 -0.5957 32 1 1.7450 4.2240 -1.0014 33 1 2.0700 -1.4912 -2.1386 34 1 0.7606 -2.2913 -1.2369 35 1 3.6856 -3.1651 -1.2522 36 1 2.3723 -3.9445 -2.1672 37 1 2.8802 -5.1003 0.0139 38 1 1.2021 -4.5080 -0.0886 39 1 6.5375 -7.0304 1.5058 40 1 4.3449 -8.3736 2.0011 41 1 1.4148 -5.9307 3.0256 42 1 2.4303 -8.8863 2.7639 43 1 0.8398 -8.3496 3.5282 44 1 0.1325 -7.3086 1.3251 45 1 1.7230 -7.8454 0.5608 46 1 0.7383 -2.2013 1.2968 47 1 2.1673 -1.5544 2.1436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027438720.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:07 Heat of formation + Delta-G solvation = 44.714898 kcal Electronic energy + Delta-G solvation = -27583.994406 eV Core-core repulsion = 23961.306421 eV Total energy + Delta-G solvation = -3622.687985 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.42542 -40.75316 -38.92817 -37.83347 -36.88082 -34.14439 -33.16491 -31.66569 -31.45683 -29.99220 -28.07596 -26.57836 -25.54065 -24.10747 -23.21486 -23.13422 -22.55291 -21.45392 -20.51344 -19.60998 -19.01128 -18.73619 -17.76701 -17.30866 -16.75293 -16.32575 -16.18980 -15.65283 -15.34989 -15.30591 -15.08601 -14.94338 -14.85597 -14.43684 -14.17433 -14.08056 -13.97317 -13.77131 -13.70299 -13.40068 -12.93158 -12.64657 -12.44446 -12.23999 -12.21037 -12.09592 -11.92526 -11.89425 -11.72275 -11.63306 -11.39464 -11.31950 -11.11028 -10.70964 -9.81875 -9.56040 -8.96499 -8.76304 -8.24040 -5.67317 0.90437 1.23019 1.31104 1.40927 1.53867 1.85541 1.95153 2.40163 2.55604 3.02655 3.19246 3.29759 3.54482 3.83782 3.91868 4.00295 4.05634 4.07485 4.15141 4.21897 4.30747 4.36873 4.50465 4.53293 4.55960 4.63266 4.66033 4.77148 4.82554 4.85492 4.89269 4.96899 4.97434 4.99608 5.09003 5.13369 5.25559 5.35088 5.38761 5.40763 5.43136 5.47515 5.88680 5.89877 6.03496 6.12382 6.29058 6.58550 6.91607 6.98684 7.55895 7.97666 8.95717 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022113 B = 0.003480 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.945271 B = 8044.700756 C = 8373.684960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.614 5.614 3 C -0.269 4.269 4 H 0.028 0.972 5 C -0.020 4.020 6 N -0.952 5.952 7 Si 0.956 3.044 8 H -0.272 1.272 9 H -0.309 1.309 10 H -0.247 1.247 11 C 0.169 3.831 12 H 0.044 0.956 13 C -0.130 4.130 14 C -0.121 4.121 15 C 0.112 3.888 16 N -0.587 5.587 17 C 0.584 3.416 18 O -0.589 6.589 19 C -0.063 4.063 20 N -0.529 5.529 21 H 0.425 0.575 22 C 0.029 3.971 23 C -0.212 4.212 24 C -0.079 4.079 25 C -0.115 4.115 26 C -0.161 4.161 27 C -0.154 4.154 28 C 0.112 3.888 29 H 0.022 0.978 30 H 0.033 0.967 31 H 0.066 0.934 32 H 0.265 0.735 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.209 0.791 40 H 0.161 0.839 41 H 0.078 0.922 42 H 0.109 0.891 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.107 0.893 46 H 0.077 0.923 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.326 -29.311 -1.988 29.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.338 5.338 3 C -0.398 4.398 4 H 0.046 0.954 5 C -0.217 4.217 6 N -0.595 5.595 7 Si 0.784 3.216 8 H -0.199 1.199 9 H -0.237 1.237 10 H -0.171 1.171 11 C 0.062 3.938 12 H 0.062 0.938 13 C -0.169 4.169 14 C -0.159 4.159 15 C -0.009 4.009 16 N -0.318 5.318 17 C 0.372 3.628 18 O -0.469 6.469 19 C -0.177 4.177 20 N -0.124 5.124 21 H 0.263 0.737 22 C -0.106 4.106 23 C -0.235 4.235 24 C -0.087 4.087 25 C -0.134 4.134 26 C -0.198 4.198 27 C -0.191 4.191 28 C -0.012 4.012 29 H 0.041 0.959 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.106 0.894 39 H 0.225 0.775 40 H 0.179 0.821 41 H 0.096 0.904 42 H 0.127 0.873 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.125 0.875 46 H 0.095 0.905 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.452 -28.646 -1.520 28.723 hybrid contribution 0.017 1.628 -0.127 1.633 sum 1.469 -27.018 -1.647 27.108 Atomic orbital electron populations 1.21445 0.83362 0.99955 0.99156 1.44067 1.01519 1.01290 1.86936 1.18596 1.09715 0.89523 1.22008 0.95402 1.26216 1.00694 0.94537 1.00221 1.70012 1.49431 0.99253 1.40821 0.85680 0.78354 0.78375 0.79232 1.19872 1.23727 1.17071 1.20852 0.95031 0.84820 0.93096 0.93772 1.22008 1.01055 0.96204 0.97607 1.21876 0.99971 0.95393 0.98700 1.21993 1.03216 0.93555 0.82158 1.48143 1.47647 1.17755 1.18270 1.17709 0.78818 0.83778 0.82484 1.90816 1.65930 1.59586 1.30535 1.19497 0.86018 0.93309 1.18887 1.41874 1.07187 1.09187 1.54185 0.73706 1.22574 1.01728 0.80996 1.05316 1.20890 0.91505 0.99950 1.11185 1.19115 0.94599 0.90152 1.04866 1.20265 0.91772 0.95492 1.05875 1.23051 1.03643 0.93651 0.99437 1.23064 1.00328 1.01958 0.93721 1.22064 0.97443 0.82303 0.99400 0.95938 0.94862 0.91554 0.92630 0.92942 0.90822 0.92441 0.87541 0.87984 0.89413 0.77466 0.82105 0.90359 0.87315 0.88282 0.88089 0.87467 0.90498 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 4.33 8.31 127.77 1.06 5.40 16 2 N -0.61 -29.13 2.34 -701.50 -1.64 -30.78 16 3 C -0.27 -15.74 9.82 84.04 0.83 -14.91 16 4 H 0.03 1.87 8.06 -2.91 -0.02 1.84 16 5 C -0.02 -1.19 5.28 84.86 0.45 -0.74 16 6 N -0.95 -60.60 13.97 21.65 0.30 -60.30 16 7 Si 0.96 45.64 25.10 68.60 1.72 47.36 16 8 H -0.27 -12.28 6.64 99.48 0.66 -11.62 16 9 H -0.31 -14.96 7.11 99.48 0.71 -14.26 16 10 H -0.25 -10.86 7.11 99.48 0.71 -10.16 16 11 C 0.17 6.65 2.76 45.21 0.12 6.78 16 12 H 0.04 1.96 7.89 -2.39 -0.02 1.94 16 13 C -0.13 -3.93 5.10 30.62 0.16 -3.78 16 14 C -0.12 -2.65 6.08 30.67 0.19 -2.47 16 15 C 0.11 2.39 6.33 86.36 0.55 2.94 16 16 N -0.59 -17.65 2.97 -822.76 -2.44 -20.09 16 17 C 0.58 19.55 7.33 86.44 0.63 20.18 16 18 O -0.59 -25.61 16.54 -4.34 -0.07 -25.68 16 19 C -0.06 -1.61 5.16 40.35 0.21 -1.40 16 20 N -0.53 -10.12 6.10 -183.63 -1.12 -11.24 16 21 H 0.42 7.02 8.96 -92.71 -0.83 6.18 16 22 C 0.03 0.38 11.89 83.48 0.99 1.38 16 23 C -0.21 -3.31 10.15 22.01 0.22 -3.09 16 24 C -0.08 -1.69 5.23 -19.56 -0.10 -1.79 16 25 C -0.12 -2.29 6.01 -11.54 -0.07 -2.35 16 26 C -0.16 -2.26 10.04 30.62 0.31 -1.95 16 27 C -0.15 -2.11 10.24 30.62 0.31 -1.79 16 28 C 0.11 4.09 5.80 86.51 0.50 4.59 16 29 H 0.02 0.89 8.14 -2.39 -0.02 0.88 16 30 H 0.03 1.49 3.67 -2.39 -0.01 1.48 16 31 H 0.07 2.24 6.48 -2.38 -0.02 2.23 16 32 H 0.26 15.85 8.31 -92.71 -0.77 15.07 16 33 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 2.03 6.76 -2.39 -0.02 2.01 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.10 1.94 5.86 -2.38 -0.01 1.92 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.21 1.05 8.06 -2.91 -0.02 1.02 16 40 H 0.16 1.73 7.25 -2.91 -0.02 1.71 16 41 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.11 1.25 7.03 -2.39 -0.02 1.23 16 43 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 44 H 0.10 1.25 8.14 -2.39 -0.02 1.24 16 45 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 46 H 0.08 2.58 7.52 -2.39 -0.02 2.56 16 47 H 0.05 2.36 7.03 -2.39 -0.02 2.34 16 Total: -1.00 -78.54 369.57 3.21 -75.33 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.11 Total: 18.41 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 6.36 Total: 6.98 kcal Atomic # 7 Polarization: -117.50 SS G_CDS: -4.90 Total: -122.40 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.07 Total: -25.68 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.72 Total: 47.36 kcal Total: -78.54 3.21 -75.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027438720.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.043 kcal (2) G-P(sol) polarization free energy of solvation -78.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds