Wall clock time and date at job start Tue Mar 31 2020 11:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 120.00439 * 2 1 4 4 N 1.46490 * 109.47194 * 121.92171 * 3 2 1 5 5 C 1.35536 * 125.68098 * 265.87587 * 4 3 2 6 6 C 1.35450 * 108.87444 * 180.02562 * 5 4 3 7 7 C 1.39835 * 107.86532 * 359.73597 * 6 5 4 8 8 C 1.37649 * 125.68080 * 85.89691 * 4 3 2 9 9 C 1.46685 * 126.22799 * 359.97438 * 8 4 3 10 10 O 1.21687 * 120.00130 * 334.65998 * 9 8 4 11 11 N 1.34778 * 119.99926 * 154.66168 * 9 8 4 12 12 C 1.46934 * 120.62972 * 358.68701 * 11 9 8 13 13 C 1.53192 * 108.76987 * 233.58355 * 12 11 9 14 14 C 1.53034 * 109.31779 * 305.36294 * 13 12 11 15 15 C 1.53046 * 109.53708 * 61.36859 * 14 13 12 16 16 H 1.08995 * 109.49448 * 58.61588 * 15 14 13 17 17 N 1.46496 * 109.49882 * 178.68583 * 15 14 13 18 18 C 1.46501 * 120.00167 * 59.99645 * 17 15 14 19 19 C 1.36935 * 119.99765 * 240.00121 * 17 15 14 20 20 H 1.08005 * 120.00099 * 23.65862 * 19 17 15 21 21 C 1.38820 * 119.99967 * 203.65884 * 19 17 15 22 22 N 1.31615 * 119.99826 * 11.71318 * 21 19 17 23 23 Si 1.86800 * 120.00004 * 191.71516 * 21 19 17 24 24 H 1.48498 * 109.47112 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47087 * 119.99792 * 23 21 19 26 26 H 1.48502 * 109.47045 * 239.99936 * 23 21 19 27 27 C 1.46921 * 120.63164 * 178.65970 * 11 9 8 28 28 H 1.08001 * 119.99817 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.99842 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99603 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46896 * 1.92392 * 3 2 1 32 32 H 1.08996 * 109.47277 * 241.92703 * 3 2 1 33 33 H 1.08002 * 125.56303 * 0.03306 * 5 4 3 34 34 H 1.08003 * 126.06818 * 179.97438 * 6 5 4 35 35 H 1.08003 * 126.46186 * 180.26535 * 7 6 5 36 36 H 1.08994 * 109.58461 * 113.80079 * 12 11 9 37 37 H 1.08994 * 109.58412 * 353.37014 * 12 11 9 38 38 H 1.09008 * 109.49426 * 185.40941 * 13 12 11 39 39 H 1.08997 * 109.52543 * 65.33743 * 13 12 11 40 40 H 1.09006 * 109.45978 * 301.34956 * 14 13 12 41 41 H 1.09004 * 109.46028 * 181.38598 * 14 13 12 42 42 H 1.09001 * 109.47094 * 86.26311 * 18 17 15 43 43 H 1.08999 * 109.46781 * 206.26505 * 18 17 15 44 44 H 1.09002 * 109.47292 * 326.26431 * 18 17 15 45 45 H 0.96993 * 120.00284 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.58615 * 6.63000 * 27 11 9 47 47 H 1.09000 * 109.59025 * 246.20088 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9402 1.3627 1.1722 5 6 2.6314 1.9315 2.3631 6 6 3.6857 1.7918 3.2019 7 6 4.6919 1.1050 2.5156 8 6 4.2149 0.8486 1.2477 9 6 4.9325 0.1497 0.1762 10 8 4.3111 -0.4250 -0.6981 11 7 6.2802 0.1439 0.1601 12 6 7.0443 0.8572 1.1927 13 6 8.0323 1.8064 0.5073 14 6 8.8947 1.0142 -0.4779 15 6 8.0016 0.3890 -1.5520 16 1 7.4519 1.1744 -2.0704 17 7 8.8311 -0.3430 -2.5124 18 6 9.6693 -1.4553 -2.0580 19 6 8.8230 0.0126 -3.8347 20 1 8.5397 1.0142 -4.1229 21 6 9.1790 -0.9143 -4.8049 22 7 9.2998 -2.1858 -4.4873 23 14 9.4866 -0.3568 -6.5610 24 1 9.2860 1.1114 -6.6566 25 1 10.8796 -0.6930 -6.9502 26 1 8.5380 -1.0459 -7.4724 27 6 7.0132 -0.5763 -0.8900 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 1.3558 2.1333 0.0345 32 1 2.6641 1.3778 -0.9067 33 1 1.6971 2.4169 2.6039 34 1 3.7382 2.1446 4.2214 35 1 5.6612 0.8296 2.9044 36 1 7.5913 0.1393 1.8038 37 1 6.3626 1.4306 1.8208 38 1 8.6713 2.2707 1.2585 39 1 7.4823 2.5788 -0.0301 40 1 9.4260 0.2265 0.0564 41 1 9.6152 1.6830 -0.9489 42 1 9.0826 -2.3740 -2.0532 43 1 10.5180 -1.5697 -2.7324 44 1 10.0309 -1.2499 -1.0505 45 1 9.5489 -2.8335 -5.1651 46 1 6.3111 -0.9488 -1.6359 47 1 7.5577 -1.4111 -0.4487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027442507.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:04 Heat of formation + Delta-G solvation = 82.263131 kcal Electronic energy + Delta-G solvation = -27370.457625 eV Core-core repulsion = 23749.397853 eV Total energy + Delta-G solvation = -3621.059772 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.57374 -39.36620 -37.24775 -35.56803 -34.92452 -32.43482 -31.48183 -31.22901 -29.87664 -28.19579 -26.28373 -25.98603 -25.27551 -23.54936 -22.05934 -21.30083 -20.84194 -20.36421 -19.12947 -18.69451 -17.25142 -16.71896 -16.26110 -15.64526 -15.34983 -15.13818 -14.73840 -14.40163 -14.33167 -13.80589 -13.73703 -13.39395 -13.37298 -13.19048 -12.75624 -12.61416 -12.60492 -12.34170 -12.15600 -11.92454 -11.83967 -11.42723 -11.02542 -10.94746 -10.80035 -10.45884 -10.34224 -10.29710 -10.12519 -9.89086 -9.78238 -9.71962 -9.58958 -8.78684 -8.56045 -8.36536 -8.11503 -6.72700 -5.73442 -3.18162 1.53627 1.88118 2.66388 2.75931 3.37972 3.42234 3.46205 3.48000 3.49936 4.50056 4.51604 4.62072 4.67928 4.91070 5.07538 5.09157 5.22805 5.28636 5.31151 5.38261 5.39740 5.49083 5.58769 5.67937 5.68278 5.80363 5.94757 5.98486 6.03843 6.11136 6.19910 6.28597 6.37418 6.40815 6.43396 6.53133 6.67132 6.78537 6.82971 6.93543 6.97623 7.02828 7.15390 7.40171 7.70290 7.71378 7.82716 8.39949 8.44891 9.24640 9.86949 10.36329 11.32948 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015971 B = 0.003582 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.785667 B = 7815.699040 C = 8954.197397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.157 4.157 3 C 0.132 3.868 4 N -0.406 5.406 5 C 0.008 3.992 6 C -0.207 4.207 7 C -0.161 4.161 8 C -0.033 4.033 9 C 0.578 3.422 10 O -0.547 6.547 11 N -0.590 5.590 12 C 0.074 3.926 13 C -0.130 4.130 14 C -0.134 4.134 15 C 0.169 3.831 16 H 0.063 0.937 17 N -0.591 5.591 18 C 0.160 3.840 19 C -0.255 4.255 20 H 0.068 0.932 21 C 0.003 3.997 22 N -0.906 5.906 23 Si 0.905 3.095 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.101 3.899 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.122 0.878 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.164 0.836 34 H 0.141 0.859 35 H 0.157 0.843 36 H 0.067 0.933 37 H 0.113 0.887 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.017 0.983 43 H 0.058 0.942 44 H -0.003 1.003 45 H 0.252 0.748 46 H 0.091 0.909 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.795 8.785 16.536 22.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.176 4.176 3 C 0.011 3.989 4 N -0.079 5.079 5 C -0.126 4.126 6 C -0.231 4.231 7 C -0.186 4.186 8 C -0.147 4.147 9 C 0.366 3.634 10 O -0.426 6.426 11 N -0.322 5.322 12 C -0.048 4.048 13 C -0.168 4.168 14 C -0.173 4.173 15 C 0.060 3.940 16 H 0.082 0.918 17 N -0.312 5.312 18 C 0.016 3.984 19 C -0.384 4.384 20 H 0.086 0.914 21 C -0.195 4.195 22 N -0.551 5.551 23 Si 0.735 3.265 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.217 1.217 27 C -0.023 4.023 28 H 0.115 0.885 29 H 0.121 0.879 30 H 0.140 0.860 31 H 0.110 0.890 32 H 0.123 0.877 33 H 0.182 0.818 34 H 0.158 0.842 35 H 0.174 0.826 36 H 0.085 0.915 37 H 0.130 0.870 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.035 0.965 43 H 0.077 0.923 44 H 0.015 0.985 45 H 0.063 0.937 46 H 0.110 0.890 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.243 8.297 15.578 21.480 hybrid contribution 0.186 0.054 -0.954 0.973 sum -12.057 8.351 14.624 20.712 Atomic orbital electron populations 1.23877 0.95498 1.02125 1.00291 1.23172 0.95870 0.98807 0.99736 1.21043 0.93093 0.96798 0.87962 1.43980 1.11168 1.41492 1.11263 1.21933 1.01119 1.04296 0.85271 1.20813 0.94376 1.07675 1.00254 1.21648 1.00268 1.03919 0.92802 1.20256 0.87331 1.09742 0.97352 1.17079 0.82190 0.80287 0.83801 1.90813 1.66900 1.45992 1.38873 1.47956 1.04322 1.51204 1.28713 1.22666 0.95543 0.95668 0.90912 1.21892 0.97819 0.98133 0.99002 1.22082 0.98713 0.99325 0.97211 1.20635 0.90176 0.93386 0.89836 0.91847 1.43941 1.46231 1.37006 1.04060 1.20789 0.94756 0.89242 0.93631 1.19280 1.42174 0.95037 0.81944 0.91407 1.25045 1.01627 0.94926 0.97923 1.70070 1.51971 1.00260 1.32768 0.86174 0.77508 0.77992 0.84816 1.20322 1.21604 1.21696 1.22557 0.95214 0.95386 0.89107 0.88534 0.87868 0.85965 0.88974 0.87658 0.81834 0.84151 0.82601 0.91518 0.86990 0.91262 0.91903 0.92252 0.91810 0.96461 0.92342 0.98512 0.93742 0.89024 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 14.32 29.01 0.42 -1.20 16 2 C -0.16 -1.82 9.52 -36.03 -0.34 -2.17 16 3 C 0.13 1.48 5.81 -5.20 -0.03 1.45 16 4 N -0.41 -5.02 2.74 -114.16 -0.31 -5.33 16 5 C 0.01 0.08 11.37 -16.91 -0.19 -0.11 16 6 C -0.21 -2.09 10.81 -39.98 -0.43 -2.52 16 7 C -0.16 -1.88 8.55 -39.12 -0.33 -2.22 16 8 C -0.03 -0.47 6.52 -81.98 -0.53 -1.00 16 9 C 0.58 10.02 7.49 -12.85 -0.10 9.92 16 10 O -0.55 -11.16 14.25 5.20 0.07 -11.09 16 11 N -0.59 -9.77 2.97 -174.31 -0.52 -10.29 16 12 C 0.07 0.95 5.34 -3.71 -0.02 0.93 16 13 C -0.13 -1.70 6.08 -26.61 -0.16 -1.87 16 14 C -0.13 -2.25 5.11 -26.69 -0.14 -2.38 16 15 C 0.17 3.51 2.75 -67.81 -0.19 3.32 16 16 H 0.06 1.40 7.87 -51.93 -0.41 0.99 16 17 N -0.59 -14.80 2.81 -173.34 -0.49 -15.29 16 18 C 0.16 3.93 7.98 59.85 0.48 4.40 16 19 C -0.25 -7.07 9.58 -15.06 -0.14 -7.21 16 20 H 0.07 1.86 7.82 -52.48 -0.41 1.45 16 21 C 0.00 0.09 5.07 -17.43 -0.09 0.00 16 22 N -0.91 -26.60 10.73 55.49 0.60 -26.01 16 23 Si 0.91 22.11 29.57 -169.99 -5.03 17.08 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 C 0.10 2.01 5.79 -3.71 -0.02 1.99 16 28 H 0.10 0.68 7.84 -52.49 -0.41 0.27 16 29 H 0.10 0.84 8.06 -52.49 -0.42 0.42 16 30 H 0.12 1.74 7.65 -52.49 -0.40 1.34 16 31 H 0.09 0.74 7.77 -51.93 -0.40 0.34 16 32 H 0.11 1.40 7.29 -51.93 -0.38 1.02 16 33 H 0.16 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.16 1.55 5.77 -52.48 -0.30 1.24 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.11 1.24 3.42 -51.93 -0.18 1.06 16 38 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.99 6.74 -51.93 -0.35 0.64 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.02 0.45 7.82 -51.93 -0.41 0.04 16 43 H 0.06 1.56 6.74 -51.93 -0.35 1.21 16 44 H 0.00 -0.07 6.47 -51.93 -0.34 -0.41 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.09 2.14 7.00 -51.93 -0.36 1.78 16 47 H 0.06 1.25 7.51 -51.93 -0.39 0.86 16 LS Contribution 369.26 15.07 5.56 5.56 Total: -1.00 -32.31 369.26 -9.12 -41.43 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -7.19 Total: 2.59 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -1.83 Total: 1.34 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.72 Total: -56.92 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.07 Total: -11.09 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.31 -9.12 -41.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027442507.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.695 kcal (2) G-P(sol) polarization free energy of solvation -32.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds