Wall clock time and date at job start Tue Mar 31 2020 11:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 120.00439 * 2 1 4 4 N 1.46490 * 109.47194 * 121.92171 * 3 2 1 5 5 C 1.35536 * 125.68098 * 265.87587 * 4 3 2 6 6 C 1.35450 * 108.87444 * 180.02562 * 5 4 3 7 7 C 1.39835 * 107.86532 * 359.73597 * 6 5 4 8 8 C 1.37649 * 125.68080 * 85.89691 * 4 3 2 9 9 C 1.46685 * 126.22799 * 359.97438 * 8 4 3 10 10 O 1.21687 * 120.00130 * 334.65998 * 9 8 4 11 11 N 1.34778 * 119.99926 * 154.66168 * 9 8 4 12 12 C 1.46934 * 120.62972 * 358.68701 * 11 9 8 13 13 C 1.53192 * 108.76987 * 233.58355 * 12 11 9 14 14 C 1.53034 * 109.31779 * 305.36294 * 13 12 11 15 15 C 1.53046 * 109.53708 * 61.36859 * 14 13 12 16 16 H 1.08995 * 109.49448 * 58.61588 * 15 14 13 17 17 N 1.46496 * 109.49882 * 178.68583 * 15 14 13 18 18 C 1.46501 * 120.00167 * 59.99645 * 17 15 14 19 19 C 1.36935 * 119.99765 * 240.00121 * 17 15 14 20 20 H 1.08005 * 120.00099 * 23.65862 * 19 17 15 21 21 C 1.38820 * 119.99967 * 203.65884 * 19 17 15 22 22 N 1.31615 * 119.99826 * 11.71318 * 21 19 17 23 23 Si 1.86800 * 120.00004 * 191.71516 * 21 19 17 24 24 H 1.48498 * 109.47112 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47087 * 119.99792 * 23 21 19 26 26 H 1.48502 * 109.47045 * 239.99936 * 23 21 19 27 27 C 1.46921 * 120.63164 * 178.65970 * 11 9 8 28 28 H 1.08001 * 119.99817 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.99842 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99603 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46896 * 1.92392 * 3 2 1 32 32 H 1.08996 * 109.47277 * 241.92703 * 3 2 1 33 33 H 1.08002 * 125.56303 * 0.03306 * 5 4 3 34 34 H 1.08003 * 126.06818 * 179.97438 * 6 5 4 35 35 H 1.08003 * 126.46186 * 180.26535 * 7 6 5 36 36 H 1.08994 * 109.58461 * 113.80079 * 12 11 9 37 37 H 1.08994 * 109.58412 * 353.37014 * 12 11 9 38 38 H 1.09008 * 109.49426 * 185.40941 * 13 12 11 39 39 H 1.08997 * 109.52543 * 65.33743 * 13 12 11 40 40 H 1.09006 * 109.45978 * 301.34956 * 14 13 12 41 41 H 1.09004 * 109.46028 * 181.38598 * 14 13 12 42 42 H 1.09001 * 109.47094 * 86.26311 * 18 17 15 43 43 H 1.08999 * 109.46781 * 206.26505 * 18 17 15 44 44 H 1.09002 * 109.47292 * 326.26431 * 18 17 15 45 45 H 0.96993 * 120.00284 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.58615 * 6.63000 * 27 11 9 47 47 H 1.09000 * 109.59025 * 246.20088 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9402 1.3627 1.1722 5 6 2.6314 1.9315 2.3631 6 6 3.6857 1.7918 3.2019 7 6 4.6919 1.1050 2.5156 8 6 4.2149 0.8486 1.2477 9 6 4.9325 0.1497 0.1762 10 8 4.3111 -0.4250 -0.6981 11 7 6.2802 0.1439 0.1601 12 6 7.0443 0.8572 1.1927 13 6 8.0323 1.8064 0.5073 14 6 8.8947 1.0142 -0.4779 15 6 8.0016 0.3890 -1.5520 16 1 7.4519 1.1744 -2.0704 17 7 8.8311 -0.3430 -2.5124 18 6 9.6693 -1.4553 -2.0580 19 6 8.8230 0.0126 -3.8347 20 1 8.5397 1.0142 -4.1229 21 6 9.1790 -0.9143 -4.8049 22 7 9.2998 -2.1858 -4.4873 23 14 9.4866 -0.3568 -6.5610 24 1 9.2860 1.1114 -6.6566 25 1 10.8796 -0.6930 -6.9502 26 1 8.5380 -1.0459 -7.4724 27 6 7.0132 -0.5763 -0.8900 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 1.3558 2.1333 0.0345 32 1 2.6641 1.3778 -0.9067 33 1 1.6971 2.4169 2.6039 34 1 3.7382 2.1446 4.2214 35 1 5.6612 0.8296 2.9044 36 1 7.5913 0.1393 1.8038 37 1 6.3626 1.4306 1.8208 38 1 8.6713 2.2707 1.2585 39 1 7.4823 2.5788 -0.0301 40 1 9.4260 0.2265 0.0564 41 1 9.6152 1.6830 -0.9489 42 1 9.0826 -2.3740 -2.0532 43 1 10.5180 -1.5697 -2.7324 44 1 10.0309 -1.2499 -1.0505 45 1 9.5489 -2.8335 -5.1651 46 1 6.3111 -0.9488 -1.6359 47 1 7.5577 -1.4111 -0.4487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027442507.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:03 Heat of formation + Delta-G solvation = 63.536021 kcal Electronic energy + Delta-G solvation = -27371.269693 eV Core-core repulsion = 23749.397853 eV Total energy + Delta-G solvation = -3621.871840 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.51689 -40.67173 -38.76157 -36.95497 -36.10913 -34.07450 -32.84676 -32.33817 -31.24009 -29.55347 -28.07177 -27.16849 -26.51331 -25.30153 -23.31134 -22.69731 -21.78217 -21.19835 -20.53509 -19.84889 -18.87000 -18.23628 -17.50695 -17.05212 -16.61708 -16.49700 -16.02508 -15.68370 -15.49482 -15.32374 -15.15212 -14.75091 -14.62017 -14.38945 -14.07994 -13.87774 -13.80623 -13.64169 -13.41995 -13.25260 -12.94495 -12.89525 -12.74873 -12.44309 -12.23586 -12.19796 -12.12012 -12.02453 -11.73525 -11.51516 -11.41424 -10.94289 -10.65865 -10.58241 -9.76800 -9.62317 -9.09083 -8.77135 -7.88909 -5.36266 0.52780 1.06569 1.42245 1.43326 1.54113 1.66903 1.88898 2.30918 2.34500 2.48843 3.26461 3.53961 3.61081 3.72426 3.84705 3.98019 4.07711 4.16169 4.21586 4.25087 4.27472 4.35414 4.47480 4.51612 4.57212 4.64725 4.68468 4.77952 4.89425 4.91615 4.95479 5.04025 5.13069 5.18673 5.24725 5.30163 5.40716 5.48299 5.53712 5.54302 5.58407 5.63453 5.67600 5.90379 6.03045 6.30506 6.36352 6.45325 7.10344 7.13171 7.82341 8.25947 9.15819 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015971 B = 0.003582 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.785667 B = 7815.699040 C = 8954.197397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.191 4.191 3 C 0.135 3.865 4 N -0.414 5.414 5 C 0.023 3.977 6 C -0.211 4.211 7 C -0.147 4.147 8 C -0.079 4.079 9 C 0.570 3.430 10 O -0.595 6.595 11 N -0.591 5.591 12 C 0.072 3.928 13 C -0.120 4.120 14 C -0.122 4.122 15 C 0.168 3.832 16 H 0.040 0.960 17 N -0.608 5.608 18 C 0.178 3.822 19 C -0.267 4.267 20 H 0.065 0.935 21 C -0.051 4.051 22 N -0.937 5.937 23 Si 0.970 3.030 24 H -0.267 1.267 25 H -0.285 1.285 26 H -0.294 1.294 27 C 0.118 3.882 28 H 0.128 0.872 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.131 0.869 32 H 0.070 0.930 33 H 0.203 0.797 34 H 0.172 0.828 35 H 0.175 0.825 36 H 0.087 0.913 37 H 0.137 0.863 38 H 0.111 0.889 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.057 0.943 42 H -0.011 1.011 43 H 0.031 0.969 44 H 0.033 0.967 45 H 0.249 0.751 46 H 0.043 0.957 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.890 11.599 19.714 26.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.210 4.210 3 C 0.014 3.986 4 N -0.087 5.087 5 C -0.112 4.112 6 C -0.234 4.234 7 C -0.173 4.173 8 C -0.191 4.191 9 C 0.361 3.639 10 O -0.478 6.478 11 N -0.323 5.323 12 C -0.048 4.048 13 C -0.159 4.159 14 C -0.161 4.161 15 C 0.060 3.940 16 H 0.059 0.941 17 N -0.330 5.330 18 C 0.033 3.967 19 C -0.397 4.397 20 H 0.083 0.917 21 C -0.246 4.246 22 N -0.584 5.584 23 Si 0.798 3.202 24 H -0.191 1.191 25 H -0.211 1.211 26 H -0.221 1.221 27 C -0.007 4.007 28 H 0.146 0.854 29 H 0.128 0.872 30 H 0.099 0.901 31 H 0.149 0.851 32 H 0.088 0.912 33 H 0.219 0.781 34 H 0.190 0.810 35 H 0.192 0.808 36 H 0.105 0.895 37 H 0.154 0.846 38 H 0.129 0.871 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.008 0.992 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.058 0.942 46 H 0.062 0.938 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.327 11.152 18.807 25.606 hybrid contribution 0.371 -0.795 -1.846 2.044 sum -12.956 10.357 16.960 23.723 Atomic orbital electron populations 1.24136 0.94313 1.03899 0.96171 1.22943 0.96811 0.97558 1.03663 1.21037 0.93016 0.97858 0.86674 1.44177 1.10668 1.41604 1.12298 1.22698 1.02409 1.02228 0.83826 1.21224 0.93550 1.07095 1.01546 1.21957 1.01316 1.02510 0.91549 1.19931 0.88912 1.12877 0.97428 1.17678 0.82271 0.79824 0.84130 1.90780 1.67860 1.48046 1.41108 1.47953 1.04510 1.51214 1.28605 1.23007 0.95709 0.96002 0.90097 1.21878 0.97678 0.97444 0.98879 1.21921 0.98208 0.99528 0.96490 1.20766 0.90564 0.92442 0.90181 0.94119 1.44159 1.47370 1.37374 1.04123 1.20510 0.93231 0.88189 0.94738 1.19578 1.41557 0.95032 0.83538 0.91672 1.25817 1.01986 0.95002 1.01772 1.70232 1.53216 1.01190 1.33725 0.85163 0.77129 0.77984 0.79933 1.19138 1.21135 1.22126 1.21980 0.94073 0.95372 0.89256 0.85387 0.87227 0.90120 0.85099 0.91153 0.78060 0.81019 0.80837 0.89470 0.84605 0.87099 0.92572 0.91591 0.92383 0.99250 0.94978 0.94881 0.94158 0.93839 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 14.32 67.78 0.97 -1.42 16 2 C -0.19 -4.54 9.52 25.64 0.24 -4.30 16 3 C 0.13 3.02 5.81 85.63 0.50 3.52 16 4 N -0.41 -9.72 2.74 -515.10 -1.41 -11.13 16 5 C 0.02 0.37 11.37 83.48 0.95 1.32 16 6 C -0.21 -3.34 10.81 22.01 0.24 -3.10 16 7 C -0.15 -3.02 8.55 22.57 0.19 -2.83 16 8 C -0.08 -2.21 6.52 40.35 0.26 -1.94 16 9 C 0.57 20.84 7.49 86.45 0.65 21.49 16 10 O -0.60 -26.81 14.25 -4.31 -0.06 -26.88 16 11 N -0.59 -20.11 2.97 -823.60 -2.45 -22.56 16 12 C 0.07 1.67 5.34 86.36 0.46 2.14 16 13 C -0.12 -2.84 6.08 30.67 0.19 -2.65 16 14 C -0.12 -3.97 5.11 30.62 0.16 -3.82 16 15 C 0.17 7.26 2.75 45.07 0.12 7.38 16 16 H 0.04 1.90 7.87 -2.39 -0.02 1.89 16 17 N -0.61 -31.72 2.81 -702.32 -1.98 -33.70 16 18 C 0.18 9.03 7.98 127.77 1.02 10.05 16 19 C -0.27 -15.39 9.58 84.04 0.81 -14.58 16 20 H 0.07 3.70 7.82 -2.91 -0.02 3.68 16 21 C -0.05 -2.95 5.07 84.86 0.43 -2.51 16 22 N -0.94 -57.45 10.73 21.65 0.23 -57.22 16 23 Si 0.97 46.78 29.57 68.60 2.03 48.81 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 25 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 26 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 27 C 0.12 5.00 5.79 86.37 0.50 5.51 16 28 H 0.13 1.29 7.84 -2.91 -0.02 1.27 16 29 H 0.11 1.62 8.06 -2.91 -0.02 1.59 16 30 H 0.08 2.57 7.65 -2.91 -0.02 2.55 16 31 H 0.13 1.78 7.77 -2.39 -0.02 1.76 16 32 H 0.07 2.04 7.29 -2.39 -0.02 2.02 16 33 H 0.20 1.59 8.06 -2.91 -0.02 1.57 16 34 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 35 H 0.17 2.78 5.77 -2.91 -0.02 2.76 16 36 H 0.09 1.72 8.14 -2.39 -0.02 1.71 16 37 H 0.14 2.57 3.42 -2.39 -0.01 2.56 16 38 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 39 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.07 2.07 6.74 -2.38 -0.02 2.05 16 41 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 42 H -0.01 -0.60 7.82 -2.39 -0.02 -0.62 16 43 H 0.03 1.76 6.74 -2.39 -0.02 1.74 16 44 H 0.03 1.40 6.47 -2.39 -0.02 1.39 16 45 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 46 H 0.04 2.24 7.00 -2.39 -0.02 2.22 16 47 H 0.06 2.53 7.51 -2.39 -0.02 2.51 16 Total: -1.00 -77.91 369.26 5.00 -72.91 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.95 Total: 15.52 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 7.69 Total: 14.24 kcal Atomic # 7 Polarization: -119.01 SS G_CDS: -5.60 Total: -124.61 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.06 Total: -26.88 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -77.91 5.00 -72.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027442507.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.448 kcal (2) G-P(sol) polarization free energy of solvation -77.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds