Wall clock time and date at job start Tue Mar 31 2020 11:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36940 * 119.99692 * 2 1 4 4 H 1.07999 * 119.99495 * 202.07147 * 3 2 1 5 5 C 1.38808 * 119.99656 * 22.06972 * 3 2 1 6 6 N 1.31613 * 120.00514 * 12.40649 * 5 3 2 7 7 Si 1.86807 * 119.99607 * 192.40104 * 5 3 2 8 8 H 1.48500 * 109.47181 * 60.00114 * 7 5 3 9 9 H 1.48498 * 109.47081 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47166 * 300.00212 * 7 5 3 11 11 C 1.46500 * 120.00297 * 179.97438 * 2 1 3 12 12 H 1.08997 * 109.52564 * 179.91642 * 11 2 1 13 13 C 1.53048 * 109.49477 * 59.83804 * 11 2 1 14 14 C 1.53039 * 109.53409 * 178.68293 * 13 11 2 15 15 C 1.52763 * 109.38554 * 61.24149 * 14 13 11 16 16 N 1.46926 * 109.00794 * 305.58680 * 15 14 13 17 17 C 1.34770 * 120.63109 * 233.58517 * 16 15 14 18 18 O 1.21278 * 120.00204 * 179.71731 * 17 16 15 19 19 C 1.50701 * 119.99856 * 359.71627 * 17 16 15 20 20 C 1.52999 * 109.47103 * 180.02562 * 19 17 16 21 21 C 1.50697 * 109.47459 * 180.02562 * 20 19 17 22 22 C 1.38650 * 120.79049 * 89.99587 * 21 20 19 23 23 C 1.38207 * 119.16127 * 179.97438 * 22 21 20 24 24 N 1.31867 * 120.76750 * 359.97438 * 23 22 21 25 25 C 1.31870 * 121.72456 * 0.04093 * 24 23 22 26 26 C 1.38210 * 120.76463 * 359.95777 * 25 24 23 27 27 C 1.46926 * 118.73701 * 53.30708 * 16 15 14 28 28 H 1.09000 * 109.47343 * 274.30263 * 1 2 3 29 29 H 1.08992 * 109.47451 * 34.30782 * 1 2 3 30 30 H 1.09005 * 109.46812 * 154.30806 * 1 2 3 31 31 H 0.97006 * 120.00222 * 179.97438 * 6 5 3 32 32 H 1.09004 * 109.46104 * 298.70261 * 13 11 2 33 33 H 1.09000 * 109.45985 * 58.67479 * 13 11 2 34 34 H 1.09000 * 109.49305 * 181.31552 * 14 13 11 35 35 H 1.08999 * 109.50164 * 301.38195 * 14 13 11 36 36 H 1.08999 * 109.51098 * 185.70082 * 15 14 13 37 37 H 1.09000 * 109.43345 * 65.42093 * 15 14 13 38 38 H 1.09001 * 109.47045 * 60.00232 * 19 17 16 39 39 H 1.09004 * 109.47404 * 300.00163 * 19 17 16 40 40 H 1.09001 * 109.47000 * 60.00180 * 20 19 17 41 41 H 1.08998 * 109.47518 * 300.00178 * 20 19 17 42 42 H 1.07999 * 120.41801 * 359.71704 * 22 21 20 43 43 H 1.08006 * 119.61309 * 180.02562 * 23 22 21 44 44 H 1.08002 * 119.61749 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.41685 * 179.97438 * 26 25 24 46 46 H 1.09004 * 109.58800 * 66.43195 * 27 16 15 47 47 H 1.09004 * 109.58603 * 186.85483 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1703 1.2202 -0.3515 5 6 1.5318 2.3440 0.4517 6 7 0.3899 2.2700 1.1019 7 14 2.3212 4.0075 0.1368 8 1 2.4583 4.2213 -1.3263 9 1 1.4695 5.0772 0.7162 10 1 3.6635 4.0464 0.7707 11 6 2.1976 -1.2687 0.0006 12 1 3.2694 -1.0705 -0.0010 13 6 1.8252 -2.0740 -1.2465 14 6 2.6146 -3.3850 -1.2636 15 6 2.2543 -4.2100 -0.0294 16 7 2.4683 -3.3920 1.1722 17 6 3.2420 -3.8415 2.1800 18 8 3.4151 -3.1546 3.1645 19 6 3.8920 -5.1977 2.0837 20 6 4.7084 -5.4630 3.3502 21 6 5.3589 -6.8189 3.2537 22 6 6.6202 -6.9630 2.6963 23 6 7.1853 -8.2222 2.6252 24 7 6.5395 -9.2781 3.0802 25 6 5.3388 -9.1787 3.6162 26 6 4.7107 -7.9520 3.7211 27 6 1.8279 -2.0720 1.2515 28 1 -0.3634 0.0771 1.0248 29 1 -0.3634 0.8488 -0.5792 30 1 -0.3633 -0.9261 -0.4456 31 1 -0.0417 3.0792 1.4179 32 1 0.7575 -2.2932 -1.2318 33 1 2.0648 -1.4944 -2.1380 34 1 2.3664 -3.9474 -2.1637 35 1 3.6825 -3.1669 -1.2538 36 1 2.8878 -5.0959 0.0140 37 1 1.2077 -4.5092 -0.0860 38 1 4.5496 -5.2246 1.2149 39 1 3.1226 -5.9630 1.9809 40 1 4.0504 -5.4363 4.2189 41 1 5.4778 -4.6979 3.4536 42 1 7.1526 -6.1026 2.3185 43 1 8.1676 -8.3428 2.1927 44 1 4.8405 -10.0661 3.9777 45 1 3.7271 -7.8771 4.1607 46 1 0.7458 -2.1933 1.3014 47 1 2.1803 -1.5477 2.1398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027473317.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:48 Heat of formation + Delta-G solvation = -3.620333 kcal Electronic energy + Delta-G solvation = -26382.889023 eV Core-core repulsion = 22758.105065 eV Total energy + Delta-G solvation = -3624.783958 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.39604 -40.89088 -38.97743 -36.78131 -35.76875 -33.99371 -32.82662 -32.06144 -31.84145 -30.29725 -28.07259 -27.08089 -25.66904 -24.89528 -24.32808 -23.04622 -22.50098 -20.93274 -19.79242 -18.80517 -18.35935 -17.42711 -17.23503 -16.96142 -16.81657 -16.45592 -16.38062 -15.72152 -15.37775 -15.23794 -14.96603 -14.69703 -14.61019 -14.40562 -14.32857 -13.88020 -13.68076 -13.59747 -13.39240 -13.08222 -12.89474 -12.79415 -12.63359 -12.48584 -12.22402 -12.16922 -12.06879 -11.92999 -11.74065 -11.64055 -11.39352 -10.86073 -10.65581 -10.44535 -10.37363 -10.02964 -9.67394 -8.78378 -7.85557 -5.33743 0.26134 0.31018 1.43573 1.45642 1.52489 1.64557 2.01759 2.49137 2.91528 3.27778 3.41220 3.61585 3.66221 3.84137 3.86406 3.97290 4.04697 4.13472 4.19214 4.24532 4.25952 4.30526 4.31097 4.38403 4.54187 4.65194 4.73508 4.77933 4.78466 4.82765 4.91209 4.95273 4.98606 5.05525 5.09694 5.15513 5.17337 5.25969 5.42535 5.48665 5.51021 5.56468 5.61389 5.70304 5.84210 6.30124 6.50275 7.08667 7.12283 7.21062 7.84636 8.26753 9.17088 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023182 B = 0.002521 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.535861 B =11104.653925 C =11462.041590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.610 5.610 3 C -0.266 4.266 4 H 0.067 0.933 5 C -0.054 4.054 6 N -0.938 5.938 7 Si 0.970 3.030 8 H -0.274 1.274 9 H -0.293 1.293 10 H -0.279 1.279 11 C 0.167 3.833 12 H 0.043 0.957 13 C -0.124 4.124 14 C -0.123 4.123 15 C 0.103 3.897 16 N -0.607 5.607 17 C 0.502 3.498 18 O -0.596 6.596 19 C -0.117 4.117 20 C -0.064 4.064 21 C -0.040 4.040 22 C -0.172 4.172 23 C 0.090 3.910 24 N -0.518 5.518 25 C 0.090 3.910 26 C -0.171 4.171 27 C 0.114 3.886 28 H -0.002 1.002 29 H 0.017 0.983 30 H 0.036 0.964 31 H 0.248 0.752 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.108 0.892 35 H 0.063 0.937 36 H 0.120 0.880 37 H 0.082 0.918 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.149 0.851 43 H 0.174 0.826 44 H 0.175 0.825 45 H 0.151 0.849 46 H 0.056 0.944 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.749 -24.508 -2.319 25.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.333 5.333 3 C -0.396 4.396 4 H 0.085 0.915 5 C -0.249 4.249 6 N -0.584 5.584 7 Si 0.798 3.202 8 H -0.200 1.200 9 H -0.219 1.219 10 H -0.205 1.205 11 C 0.059 3.941 12 H 0.062 0.938 13 C -0.163 4.163 14 C -0.162 4.162 15 C -0.019 4.019 16 N -0.340 5.340 17 C 0.292 3.708 18 O -0.478 6.478 19 C -0.156 4.156 20 C -0.101 4.101 21 C -0.048 4.048 22 C -0.192 4.192 23 C -0.066 4.066 24 N -0.228 5.228 25 C -0.066 4.066 26 C -0.190 4.190 27 C -0.012 4.012 28 H 0.016 0.984 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.126 0.874 35 H 0.082 0.918 36 H 0.138 0.862 37 H 0.101 0.899 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.167 0.833 43 H 0.191 0.809 44 H 0.192 0.808 45 H 0.169 0.831 46 H 0.074 0.926 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.115 -24.835 -1.821 26.190 hybrid contribution -0.384 2.596 0.430 2.660 sum 7.731 -22.239 -1.391 23.585 Atomic orbital electron populations 1.20487 0.82546 0.96188 0.97237 1.44178 1.02201 1.01073 1.85821 1.19496 0.97949 0.86625 1.35535 0.91543 1.25807 0.98573 1.01929 0.98575 1.70231 1.19689 1.27554 1.40962 0.85306 0.77498 0.79400 0.78023 1.20026 1.21912 1.20545 1.20785 0.94784 0.85215 0.93284 0.93817 1.21934 1.00566 0.96491 0.97312 1.21823 1.00231 0.95254 0.98890 1.22025 1.03448 0.93919 0.82462 1.48375 1.48469 1.17836 1.19309 1.21504 0.78082 0.89520 0.81690 1.90701 1.63211 1.60478 1.33361 1.21645 1.01018 0.92453 1.00517 1.20279 0.99260 0.92689 0.97909 1.20334 0.94341 0.95259 0.94890 1.22301 0.96015 0.99824 1.01041 1.23126 1.00218 0.87879 0.95425 1.67702 1.09844 1.34454 1.10810 1.23148 0.90754 0.98129 0.94615 1.22304 1.02331 0.92872 1.01518 1.21935 0.96391 0.83224 0.99618 0.98418 0.96369 0.94605 0.94237 0.91904 0.92665 0.87394 0.91808 0.86181 0.89929 0.86295 0.86008 0.90703 0.91014 0.83344 0.80924 0.80813 0.83101 0.92577 0.93956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.94 7.91 127.77 1.01 9.95 16 2 N -0.61 -30.96 2.82 -702.34 -1.98 -32.94 16 3 C -0.27 -15.02 9.60 84.03 0.81 -14.22 16 4 H 0.07 3.67 7.81 -2.91 -0.02 3.65 16 5 C -0.05 -3.10 5.11 84.86 0.43 -2.66 16 6 N -0.94 -56.90 10.63 21.65 0.23 -56.67 16 7 Si 0.97 46.27 29.57 68.60 2.03 48.30 16 8 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 9 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 11 C 0.17 6.77 2.74 45.07 0.12 6.89 16 12 H 0.04 1.91 7.86 -2.39 -0.02 1.89 16 13 C -0.12 -3.71 5.13 30.62 0.16 -3.56 16 14 C -0.12 -2.40 6.06 30.53 0.19 -2.21 16 15 C 0.10 1.80 6.31 86.22 0.54 2.35 16 16 N -0.61 -17.20 2.98 -819.74 -2.44 -19.65 16 17 C 0.50 14.43 7.70 87.66 0.67 15.11 16 18 O -0.60 -23.77 15.39 -3.02 -0.05 -23.82 16 19 C -0.12 -1.92 4.03 29.85 0.12 -1.80 16 20 C -0.06 -1.15 4.68 29.85 0.14 -1.01 16 21 C -0.04 -0.61 5.17 -19.67 -0.10 -0.71 16 22 C -0.17 -2.44 9.82 22.36 0.22 -2.22 16 23 C 0.09 1.34 11.18 84.68 0.95 2.29 16 24 N -0.52 -9.36 10.36 -195.83 -2.03 -11.39 16 25 C 0.09 1.31 11.18 84.68 0.95 2.25 16 26 C -0.17 -2.33 9.82 22.36 0.22 -2.11 16 27 C 0.11 4.43 5.79 86.36 0.50 4.93 16 28 H 0.00 -0.14 7.41 -2.39 -0.02 -0.16 16 29 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 30 H 0.04 1.47 6.45 -2.38 -0.02 1.46 16 31 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 32 H 0.06 1.85 6.71 -2.38 -0.02 1.83 16 33 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.12 1.19 5.93 -2.39 -0.01 1.18 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.12 1.43 7.68 -2.39 -0.02 1.41 16 39 H 0.12 1.36 7.95 -2.39 -0.02 1.34 16 40 H 0.07 1.52 8.06 -2.39 -0.02 1.50 16 41 H 0.07 1.51 8.06 -2.39 -0.02 1.49 16 42 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 43 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 44 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 45 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 46 H 0.06 2.21 7.52 -2.38 -0.02 2.19 16 47 H 0.04 2.05 7.01 -2.38 -0.02 2.03 16 Total: -1.00 -77.32 374.09 3.64 -73.68 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 0.95 Total: 9.22 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 6.93 Total: 13.27 kcal Atomic # 7 Polarization: -114.43 SS G_CDS: -6.22 Total: -120.64 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.05 Total: -23.82 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -77.32 3.64 -73.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027473317.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.061 kcal (2) G-P(sol) polarization free energy of solvation -77.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds