Wall clock time and date at job start Tue Mar 31 2020 11:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36939 * 119.99649 * 2 1 4 4 H 1.08002 * 119.99351 * 201.98263 * 3 2 1 5 5 C 1.38807 * 120.00053 * 21.98585 * 3 2 1 6 6 N 1.31618 * 120.00288 * 12.70516 * 5 3 2 7 7 Si 1.86799 * 119.99791 * 192.70206 * 5 3 2 8 8 H 1.48496 * 109.47516 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.47104 * 120.00225 * 7 5 3 10 10 H 1.48504 * 109.47118 * 240.00186 * 7 5 3 11 11 C 1.46505 * 120.00009 * 179.97438 * 2 1 3 12 12 H 1.09000 * 109.51657 * 179.97438 * 11 2 1 13 13 C 1.53033 * 109.49768 * 300.00188 * 11 2 1 14 14 C 1.53048 * 109.53425 * 181.31602 * 13 11 2 15 15 C 1.53185 * 109.31319 * 298.63619 * 14 13 11 16 16 N 1.46926 * 108.77580 * 54.63596 * 15 14 13 17 17 C 1.34776 * 120.62994 * 126.41430 * 16 15 14 18 18 O 1.21284 * 120.00043 * 179.97438 * 17 16 15 19 19 C 1.50703 * 119.99974 * 359.97438 * 17 16 15 20 20 C 1.53000 * 109.46866 * 179.97438 * 19 17 16 21 21 C 1.50703 * 109.46866 * 179.97438 * 20 19 17 22 22 C 1.38663 * 120.41959 * 90.00426 * 21 20 19 23 23 C 1.38631 * 118.42645 * 180.02562 * 22 21 20 24 24 C 1.38232 * 119.15275 * 359.97438 * 23 22 21 25 25 N 1.31849 * 120.76641 * 0.02562 * 24 23 22 26 26 C 1.31886 * 121.72721 * 359.71051 * 25 24 23 27 27 C 1.46926 * 118.73907 * 306.38773 * 16 15 14 28 28 H 1.08993 * 109.47543 * 274.33357 * 1 2 3 29 29 H 1.09002 * 109.47410 * 34.34110 * 1 2 3 30 30 H 1.09008 * 109.46729 * 154.33471 * 1 2 3 31 31 H 0.96999 * 119.99975 * 179.97438 * 6 5 3 32 32 H 1.08995 * 109.46257 * 301.33472 * 13 11 2 33 33 H 1.09002 * 109.45933 * 61.31129 * 13 11 2 34 34 H 1.08997 * 109.49327 * 58.58827 * 14 13 11 35 35 H 1.09005 * 109.49126 * 178.65368 * 14 13 11 36 36 H 1.08995 * 109.58861 * 174.42469 * 15 14 13 37 37 H 1.09009 * 109.58771 * 294.84714 * 15 14 13 38 38 H 1.08999 * 109.46888 * 299.99975 * 19 17 16 39 39 H 1.09007 * 109.47017 * 60.00274 * 19 17 16 40 40 H 1.08999 * 109.47374 * 299.99711 * 20 19 17 41 41 H 1.09007 * 109.47051 * 60.00329 * 20 19 17 42 42 H 1.08000 * 120.79219 * 0.02562 * 22 21 20 43 43 H 1.07999 * 120.42404 * 179.97438 * 23 22 21 44 44 H 1.07998 * 119.61272 * 179.97438 * 24 23 22 45 45 H 1.07996 * 119.61917 * 180.31306 * 26 25 24 46 46 H 1.09000 * 109.58775 * 293.82297 * 27 16 15 47 47 H 1.09003 * 109.58704 * 173.39457 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1707 1.2199 -0.3501 5 6 1.5312 2.3443 0.4500 6 7 0.3914 2.2704 1.1040 7 14 2.3168 4.0081 0.1276 8 1 3.5848 3.8200 -0.6221 9 1 1.3889 4.8469 -0.6729 10 1 2.6010 4.6804 1.4209 11 6 2.1975 -1.2688 0.0006 12 1 3.2693 -1.0704 0.0000 13 6 1.8282 -2.0712 1.2502 14 6 2.6177 -3.3823 1.2683 15 6 2.2498 -4.2123 0.0345 16 7 2.4655 -3.3946 -1.1670 17 6 3.2359 -3.8468 -2.1761 18 8 3.4059 -3.1624 -3.1630 19 6 3.8862 -5.2028 -2.0784 20 6 4.6986 -5.4714 -3.3468 21 6 5.3494 -6.8271 -3.2488 22 6 4.6922 -7.9566 -3.7128 23 6 5.3290 -9.1829 -3.6016 24 6 6.5893 -9.2385 -3.0363 25 7 7.1842 -8.1435 -2.6057 26 6 6.6106 -6.9597 -2.7000 27 6 1.8249 -2.0748 -1.2477 28 1 -0.3634 0.0776 1.0246 29 1 -0.3634 0.8485 -0.5797 30 1 -0.3633 -0.9264 -0.4451 31 1 -0.0405 3.0799 1.4188 32 1 2.0698 -1.4896 2.1398 33 1 0.7606 -2.2906 1.2385 34 1 3.6855 -3.1641 1.2549 35 1 2.3720 -3.9423 2.1706 36 1 2.8802 -5.1002 -0.0098 37 1 1.2021 -4.5079 0.0920 38 1 4.5465 -5.2274 -1.2115 39 1 3.1171 -5.9677 -1.9712 40 1 4.0379 -5.4470 -4.2134 41 1 5.4677 -4.7065 -3.4545 42 1 3.7077 -7.8827 -4.1504 43 1 4.8467 -10.0834 -3.9522 44 1 7.0920 -10.1901 -2.9457 45 1 7.1311 -6.0843 -2.3407 46 1 0.7427 -2.1962 -1.2947 47 1 2.1751 -1.5524 -2.1380 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027483071.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:38 Heat of formation + Delta-G solvation = 16.490943 kcal Electronic energy + Delta-G solvation = -26350.684456 eV Core-core repulsion = 22726.772588 eV Total energy + Delta-G solvation = -3623.911868 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.57207 -39.92304 -37.54917 -35.10591 -34.77277 -32.44708 -32.27474 -31.35458 -30.37533 -28.68524 -26.06858 -25.86062 -24.42862 -23.86353 -23.39442 -21.81918 -21.57844 -19.49339 -18.55749 -17.49562 -17.06876 -16.75465 -16.71106 -15.73276 -15.49736 -15.22409 -14.90900 -14.23008 -14.13338 -13.99978 -13.84618 -13.61598 -13.36994 -13.29961 -13.16922 -12.69472 -12.51188 -12.38418 -12.25136 -11.97266 -11.79771 -11.28267 -11.06096 -10.94736 -10.85931 -10.65981 -10.41812 -10.31061 -10.11692 -10.11349 -9.88027 -9.81733 -9.73486 -9.58773 -9.22190 -8.62074 -8.34397 -6.76619 -5.72440 -3.18115 0.78294 0.96285 2.76338 3.14360 3.38792 3.46344 3.48940 3.51274 4.12681 4.37340 4.49649 4.49958 4.65610 4.69111 4.74613 4.85545 4.94060 4.98309 5.14343 5.23638 5.30421 5.30805 5.44357 5.46078 5.53142 5.58931 5.62226 5.76911 5.78644 5.84864 5.91558 5.98486 6.04426 6.14837 6.21797 6.37013 6.39651 6.50546 6.64555 6.78062 6.93218 6.99283 7.38485 7.61760 7.66920 7.72118 7.82177 8.32660 8.40510 9.23536 9.86201 10.34121 11.32460 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024911 B = 0.002472 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.748500 B =11324.060838 C =11689.783846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.593 5.593 3 C -0.253 4.253 4 H 0.069 0.931 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.291 1.291 11 C 0.170 3.830 12 H 0.064 0.936 13 C -0.132 4.132 14 C -0.133 4.133 15 C 0.108 3.892 16 N -0.606 5.606 17 C 0.510 3.490 18 O -0.544 6.544 19 C -0.133 4.133 20 C -0.062 4.062 21 C -0.129 4.129 22 C -0.074 4.074 23 C -0.171 4.171 24 C 0.089 3.911 25 N -0.484 5.484 26 C 0.102 3.898 27 C 0.096 3.904 28 H 0.029 0.971 29 H 0.044 0.956 30 H -0.002 1.002 31 H 0.251 0.749 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.153 0.847 45 H 0.156 0.844 46 H 0.062 0.938 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.028 -23.525 -5.036 24.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.315 5.315 3 C -0.382 4.382 4 H 0.087 0.913 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.218 1.218 11 C 0.060 3.940 12 H 0.082 0.918 13 C -0.172 4.172 14 C -0.172 4.172 15 C -0.015 4.015 16 N -0.339 5.339 17 C 0.298 3.702 18 O -0.422 6.422 19 C -0.173 4.173 20 C -0.101 4.101 21 C -0.131 4.131 22 C -0.100 4.100 23 C -0.191 4.191 24 C -0.068 4.068 25 N -0.192 5.192 26 C -0.055 4.055 27 C -0.027 4.027 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.016 0.984 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.171 0.829 45 H 0.173 0.827 46 H 0.081 0.919 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.831 -23.046 -5.125 24.577 hybrid contribution -0.688 0.927 -0.266 1.185 sum 6.142 -22.119 -5.391 23.581 Atomic orbital electron populations 1.20789 0.82587 0.95497 0.99332 1.43911 1.01850 1.00057 1.85698 1.19278 0.97740 0.85180 1.36009 0.91333 1.24992 0.97800 0.98465 0.98426 1.70082 1.18524 1.26890 1.39844 0.86178 0.78659 0.84243 0.77453 1.20289 1.21609 1.21768 1.20574 0.96407 0.86247 0.90748 0.91762 1.22125 0.99404 0.94680 1.01001 1.21937 1.01107 0.97488 0.96638 1.21755 1.01303 0.93541 0.84946 1.48221 1.49045 1.19022 1.17631 1.20542 0.78783 0.88159 0.82730 1.90705 1.61600 1.58775 1.31083 1.21668 1.00358 0.95372 0.99889 1.20299 0.99657 0.92319 0.97807 1.20986 0.96178 0.96490 0.99484 1.21561 0.99846 0.91965 0.96589 1.22159 0.96898 0.98691 1.01357 1.22768 0.92510 0.97072 0.94416 1.67704 1.36363 0.98950 1.16202 1.22765 0.92102 0.95421 0.95234 1.22415 0.96821 0.81471 1.02031 0.95228 0.93762 0.98399 0.93834 0.91469 0.92483 0.91760 0.91298 0.90354 0.91487 0.88801 0.89084 0.89838 0.89577 0.84781 0.84833 0.82924 0.82676 0.91932 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.93 8.03 59.85 0.48 4.41 16 2 N -0.59 -14.68 2.82 -173.35 -0.49 -15.17 16 3 C -0.25 -6.96 9.60 -15.06 -0.14 -7.10 16 4 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 5 C 0.00 0.03 5.10 -17.43 -0.09 -0.06 16 6 N -0.91 -26.35 10.64 55.49 0.59 -25.76 16 7 Si 0.90 22.07 29.57 -169.99 -5.03 17.04 16 8 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 9 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 C 0.17 3.41 2.74 -67.81 -0.19 3.23 16 12 H 0.06 1.38 7.86 -51.93 -0.41 0.97 16 13 C -0.13 -2.26 5.15 -26.69 -0.14 -2.40 16 14 C -0.13 -1.66 6.08 -26.61 -0.16 -1.82 16 15 C 0.11 1.19 6.34 -3.71 -0.02 1.17 16 16 N -0.61 -8.77 2.97 -172.77 -0.51 -9.29 16 17 C 0.51 7.29 7.70 -10.98 -0.08 7.20 16 18 O -0.54 -9.96 15.40 5.55 0.09 -9.88 16 19 C -0.13 -1.26 4.03 -27.88 -0.11 -1.37 16 20 C -0.06 -0.58 4.66 -27.88 -0.13 -0.71 16 21 C -0.13 -1.11 5.15 -104.48 -0.54 -1.65 16 22 C -0.07 -0.55 9.86 -39.28 -0.39 -0.94 16 23 C -0.17 -1.16 10.11 -39.44 -0.40 -1.56 16 24 C 0.09 0.71 11.18 -17.55 -0.20 0.52 16 25 N -0.48 -4.95 10.36 -13.25 -0.14 -5.09 16 26 C 0.10 0.95 10.86 -17.55 -0.19 0.76 16 27 C 0.10 1.74 5.78 -3.71 -0.02 1.72 16 28 H 0.03 0.77 7.41 -51.93 -0.38 0.38 16 29 H 0.04 1.17 7.21 -51.93 -0.37 0.79 16 30 H 0.00 -0.05 6.35 -51.92 -0.33 -0.38 16 31 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.06 0.98 7.72 -51.93 -0.40 0.58 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.64 5.93 -51.93 -0.31 0.34 16 37 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 38 H 0.09 0.78 7.69 -51.93 -0.40 0.38 16 39 H 0.09 0.70 7.94 -51.93 -0.41 0.29 16 40 H 0.08 0.83 8.05 -51.93 -0.42 0.41 16 41 H 0.09 0.88 8.05 -51.93 -0.42 0.46 16 42 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 43 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 44 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.16 1.24 8.06 -52.49 -0.42 0.81 16 46 H 0.06 1.13 6.49 -51.93 -0.34 0.80 16 47 H 0.09 1.86 7.01 -51.93 -0.36 1.50 16 LS Contribution 374.10 15.07 5.64 5.64 Total: -1.00 -32.86 374.10 -9.66 -42.52 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -7.48 Total: -1.41 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -2.32 Total: 1.39 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.55 Total: -55.31 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.86 -9.66 -42.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027483071.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.011 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds