Wall clock time and date at job start Tue Mar 31 2020 11:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36939 * 119.99649 * 2 1 4 4 H 1.08002 * 119.99351 * 201.98263 * 3 2 1 5 5 C 1.38807 * 120.00053 * 21.98585 * 3 2 1 6 6 N 1.31618 * 120.00288 * 12.70516 * 5 3 2 7 7 Si 1.86799 * 119.99791 * 192.70206 * 5 3 2 8 8 H 1.48496 * 109.47516 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.47104 * 120.00225 * 7 5 3 10 10 H 1.48504 * 109.47118 * 240.00186 * 7 5 3 11 11 C 1.46505 * 120.00009 * 179.97438 * 2 1 3 12 12 H 1.09000 * 109.51657 * 179.97438 * 11 2 1 13 13 C 1.53033 * 109.49768 * 300.00188 * 11 2 1 14 14 C 1.53048 * 109.53425 * 181.31602 * 13 11 2 15 15 C 1.53185 * 109.31319 * 298.63619 * 14 13 11 16 16 N 1.46926 * 108.77580 * 54.63596 * 15 14 13 17 17 C 1.34776 * 120.62994 * 126.41430 * 16 15 14 18 18 O 1.21284 * 120.00043 * 179.97438 * 17 16 15 19 19 C 1.50703 * 119.99974 * 359.97438 * 17 16 15 20 20 C 1.53000 * 109.46866 * 179.97438 * 19 17 16 21 21 C 1.50703 * 109.46866 * 179.97438 * 20 19 17 22 22 C 1.38663 * 120.41959 * 90.00426 * 21 20 19 23 23 C 1.38631 * 118.42645 * 180.02562 * 22 21 20 24 24 C 1.38232 * 119.15275 * 359.97438 * 23 22 21 25 25 N 1.31849 * 120.76641 * 0.02562 * 24 23 22 26 26 C 1.31886 * 121.72721 * 359.71051 * 25 24 23 27 27 C 1.46926 * 118.73907 * 306.38773 * 16 15 14 28 28 H 1.08993 * 109.47543 * 274.33357 * 1 2 3 29 29 H 1.09002 * 109.47410 * 34.34110 * 1 2 3 30 30 H 1.09008 * 109.46729 * 154.33471 * 1 2 3 31 31 H 0.96999 * 119.99975 * 179.97438 * 6 5 3 32 32 H 1.08995 * 109.46257 * 301.33472 * 13 11 2 33 33 H 1.09002 * 109.45933 * 61.31129 * 13 11 2 34 34 H 1.08997 * 109.49327 * 58.58827 * 14 13 11 35 35 H 1.09005 * 109.49126 * 178.65368 * 14 13 11 36 36 H 1.08995 * 109.58861 * 174.42469 * 15 14 13 37 37 H 1.09009 * 109.58771 * 294.84714 * 15 14 13 38 38 H 1.08999 * 109.46888 * 299.99975 * 19 17 16 39 39 H 1.09007 * 109.47017 * 60.00274 * 19 17 16 40 40 H 1.08999 * 109.47374 * 299.99711 * 20 19 17 41 41 H 1.09007 * 109.47051 * 60.00329 * 20 19 17 42 42 H 1.08000 * 120.79219 * 0.02562 * 22 21 20 43 43 H 1.07999 * 120.42404 * 179.97438 * 23 22 21 44 44 H 1.07998 * 119.61272 * 179.97438 * 24 23 22 45 45 H 1.07996 * 119.61917 * 180.31306 * 26 25 24 46 46 H 1.09000 * 109.58775 * 293.82297 * 27 16 15 47 47 H 1.09003 * 109.58704 * 173.39457 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1707 1.2199 -0.3501 5 6 1.5312 2.3443 0.4500 6 7 0.3914 2.2704 1.1040 7 14 2.3168 4.0081 0.1276 8 1 3.5848 3.8200 -0.6221 9 1 1.3889 4.8469 -0.6729 10 1 2.6010 4.6804 1.4209 11 6 2.1975 -1.2688 0.0006 12 1 3.2693 -1.0704 0.0000 13 6 1.8282 -2.0712 1.2502 14 6 2.6177 -3.3823 1.2683 15 6 2.2498 -4.2123 0.0345 16 7 2.4655 -3.3946 -1.1670 17 6 3.2359 -3.8468 -2.1761 18 8 3.4059 -3.1624 -3.1630 19 6 3.8862 -5.2028 -2.0784 20 6 4.6986 -5.4714 -3.3468 21 6 5.3494 -6.8271 -3.2488 22 6 4.6922 -7.9566 -3.7128 23 6 5.3290 -9.1829 -3.6016 24 6 6.5893 -9.2385 -3.0363 25 7 7.1842 -8.1435 -2.6057 26 6 6.6106 -6.9597 -2.7000 27 6 1.8249 -2.0748 -1.2477 28 1 -0.3634 0.0776 1.0246 29 1 -0.3634 0.8485 -0.5797 30 1 -0.3633 -0.9264 -0.4451 31 1 -0.0405 3.0799 1.4188 32 1 2.0698 -1.4896 2.1398 33 1 0.7606 -2.2906 1.2385 34 1 3.6855 -3.1641 1.2549 35 1 2.3720 -3.9423 2.1706 36 1 2.8802 -5.1002 -0.0098 37 1 1.2021 -4.5079 0.0920 38 1 4.5465 -5.2274 -1.2115 39 1 3.1171 -5.9677 -1.9712 40 1 4.0379 -5.4470 -4.2134 41 1 5.4677 -4.7065 -3.4545 42 1 3.7077 -7.8827 -4.1504 43 1 4.8467 -10.0834 -3.9522 44 1 7.0920 -10.1901 -2.9457 45 1 7.1311 -6.0843 -2.3407 46 1 0.7427 -2.1962 -1.2947 47 1 2.1751 -1.5524 -2.1380 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027483071.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:37 Heat of formation + Delta-G solvation = -3.063683 kcal Electronic energy + Delta-G solvation = -26351.532408 eV Core-core repulsion = 22726.772588 eV Total energy + Delta-G solvation = -3624.759820 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.39213 -40.89444 -38.95872 -36.77270 -35.53598 -33.95938 -32.93755 -32.85448 -31.34995 -30.11779 -28.07982 -26.92253 -25.61793 -24.87266 -24.43894 -23.03454 -22.48689 -20.92568 -19.78711 -18.79904 -18.30358 -17.82050 -17.40774 -17.12075 -16.70924 -16.44267 -15.91645 -15.67915 -15.40363 -15.17244 -14.95606 -14.60560 -14.53033 -14.43658 -14.07024 -13.88440 -13.77625 -13.67135 -13.57278 -13.13533 -12.89464 -12.79759 -12.51614 -12.46944 -12.29646 -12.08761 -12.01059 -11.92109 -11.78623 -11.68208 -11.39241 -10.85305 -10.69499 -10.63714 -10.33189 -9.85115 -9.68088 -8.77734 -7.85710 -5.33334 0.20344 0.39597 1.42344 1.44251 1.54550 1.65935 2.02155 2.48948 2.90797 3.27122 3.43655 3.61347 3.66808 3.92381 3.95509 4.00107 4.04173 4.11635 4.14195 4.14930 4.21983 4.31848 4.36576 4.37654 4.55729 4.66871 4.70117 4.75093 4.78712 4.88691 4.89358 4.92865 4.98432 5.04076 5.15140 5.18133 5.26583 5.27592 5.43039 5.44449 5.49213 5.53588 5.62791 5.71051 5.84506 6.30242 6.50565 7.08299 7.12382 7.21619 7.84372 8.26330 9.17010 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024911 B = 0.002472 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.748500 B =11324.060838 C =11689.783846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.611 5.611 3 C -0.263 4.263 4 H 0.062 0.938 5 C -0.050 4.050 6 N -0.935 5.935 7 Si 0.966 3.034 8 H -0.272 1.272 9 H -0.289 1.289 10 H -0.288 1.288 11 C 0.168 3.832 12 H 0.043 0.957 13 C -0.123 4.123 14 C -0.124 4.124 15 C 0.106 3.894 16 N -0.607 5.607 17 C 0.505 3.495 18 O -0.593 6.593 19 C -0.120 4.120 20 C -0.056 4.056 21 C -0.132 4.132 22 C -0.077 4.077 23 C -0.165 4.165 24 C 0.078 3.922 25 N -0.514 5.514 26 C 0.086 3.914 27 C 0.113 3.887 28 H 0.007 0.993 29 H 0.013 0.987 30 H 0.031 0.969 31 H 0.249 0.751 32 H 0.039 0.961 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.084 0.916 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.153 0.847 43 H 0.163 0.837 44 H 0.174 0.826 45 H 0.158 0.842 46 H 0.064 0.936 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.247 -26.886 -4.889 28.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.334 5.334 3 C -0.393 4.393 4 H 0.079 0.921 5 C -0.246 4.246 6 N -0.582 5.582 7 Si 0.795 3.205 8 H -0.197 1.197 9 H -0.216 1.216 10 H -0.215 1.215 11 C 0.060 3.940 12 H 0.061 0.939 13 C -0.163 4.163 14 C -0.163 4.163 15 C -0.016 4.016 16 N -0.340 5.340 17 C 0.295 3.705 18 O -0.474 6.474 19 C -0.159 4.159 20 C -0.094 4.094 21 C -0.134 4.134 22 C -0.103 4.103 23 C -0.185 4.185 24 C -0.078 4.078 25 N -0.223 5.223 26 C -0.070 4.070 27 C -0.012 4.012 28 H 0.026 0.974 29 H 0.032 0.968 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.120 0.880 36 H 0.138 0.862 37 H 0.102 0.898 38 H 0.132 0.868 39 H 0.140 0.860 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.171 0.829 43 H 0.181 0.819 44 H 0.191 0.809 45 H 0.175 0.825 46 H 0.083 0.917 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.071 -26.464 -4.962 27.838 hybrid contribution -0.718 1.888 -0.356 2.051 sum 6.353 -24.576 -5.318 25.934 Atomic orbital electron populations 1.20492 0.82528 0.95762 0.97635 1.44122 1.02189 1.01069 1.86039 1.19502 0.97662 0.86774 1.35401 0.92062 1.25706 0.98559 1.01556 0.98740 1.70222 1.19679 1.27358 1.40900 0.85216 0.77914 0.80204 0.77188 1.19671 1.21617 1.21508 1.20712 0.94708 0.85274 0.93329 0.93871 1.21940 1.00241 0.96447 0.97647 1.21902 1.00072 0.95228 0.99079 1.22068 1.03426 0.93794 0.82268 1.48306 1.48745 1.17755 1.19189 1.21453 0.77889 0.89477 0.81653 1.90689 1.63081 1.60517 1.33070 1.21683 1.01034 0.92542 1.00643 1.20165 0.99074 0.92543 0.97630 1.20841 0.96046 0.96278 1.00202 1.21855 1.00630 0.91768 0.95997 1.22473 0.96299 0.99554 1.00138 1.23236 0.93245 0.97311 0.94018 1.67700 1.37413 0.99731 1.17479 1.22872 0.92643 0.95547 0.95963 1.21865 0.96919 0.83310 0.99147 0.97442 0.96794 0.95112 0.94180 0.94178 0.92372 0.91954 0.87986 0.86167 0.89769 0.86766 0.86007 0.90555 0.91227 0.82904 0.81931 0.80860 0.82493 0.91744 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.98 8.03 127.77 1.03 10.01 16 2 N -0.61 -31.23 2.82 -702.34 -1.98 -33.21 16 3 C -0.26 -14.99 9.60 84.03 0.81 -14.18 16 4 H 0.06 3.49 7.81 -2.91 -0.02 3.47 16 5 C -0.05 -2.89 5.10 84.86 0.43 -2.46 16 6 N -0.93 -55.84 10.64 21.65 0.23 -55.61 16 7 Si 0.97 46.46 29.57 68.60 2.03 48.49 16 8 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 9 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 10 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 11 C 0.17 6.86 2.74 45.07 0.12 6.98 16 12 H 0.04 1.92 7.86 -2.39 -0.02 1.90 16 13 C -0.12 -4.12 5.15 30.62 0.16 -3.96 16 14 C -0.12 -2.71 6.08 30.67 0.19 -2.52 16 15 C 0.11 1.90 6.34 86.36 0.55 2.45 16 16 N -0.61 -16.47 2.97 -818.90 -2.43 -18.90 16 17 C 0.50 13.70 7.70 87.66 0.67 14.38 16 18 O -0.59 -22.00 15.40 -3.04 -0.05 -22.05 16 19 C -0.12 -1.89 4.03 29.85 0.12 -1.77 16 20 C -0.06 -0.95 4.66 29.85 0.14 -0.82 16 21 C -0.13 -1.99 5.15 -19.77 -0.10 -2.09 16 22 C -0.08 -0.90 9.86 22.47 0.22 -0.68 16 23 C -0.17 -1.68 10.11 22.36 0.23 -1.46 16 24 C 0.08 1.06 11.18 84.69 0.95 2.01 16 25 N -0.51 -9.77 10.36 -195.84 -2.03 -11.80 16 26 C 0.09 1.50 10.86 84.67 0.92 2.42 16 27 C 0.11 4.10 5.78 86.36 0.50 4.60 16 28 H 0.01 0.39 7.41 -2.39 -0.02 0.38 16 29 H 0.01 0.74 7.21 -2.39 -0.02 0.72 16 30 H 0.03 1.29 6.35 -2.38 -0.02 1.28 16 31 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 32 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.06 1.92 7.72 -2.39 -0.02 1.90 16 34 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.12 1.25 5.93 -2.39 -0.01 1.24 16 37 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.11 1.42 7.69 -2.39 -0.02 1.40 16 39 H 0.12 1.26 7.94 -2.38 -0.02 1.24 16 40 H 0.08 1.42 8.05 -2.39 -0.02 1.40 16 41 H 0.07 1.42 8.05 -2.38 -0.02 1.40 16 42 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 43 H 0.16 0.66 8.06 -2.91 -0.02 0.64 16 44 H 0.17 1.41 8.06 -2.91 -0.02 1.38 16 45 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 46 H 0.06 2.30 6.49 -2.39 -0.02 2.28 16 47 H 0.05 2.39 7.01 -2.39 -0.02 2.37 16 Total: -1.00 -75.84 374.10 3.64 -72.20 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 0.95 Total: 7.98 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 6.93 Total: 12.89 kcal Atomic # 7 Polarization: -113.31 SS G_CDS: -6.21 Total: -119.52 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.05 Total: -22.05 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -75.84 3.64 -72.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027483071.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.134 kcal (2) G-P(sol) polarization free energy of solvation -75.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds