Wall clock time and date at job start Tue Mar 31 2020 11:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36938 * 120.00191 * 2 1 4 4 H 1.07993 * 120.00423 * 202.06788 * 3 2 1 5 5 C 1.38811 * 119.99493 * 22.06985 * 3 2 1 6 6 N 1.31621 * 120.00561 * 12.40099 * 5 3 2 7 7 Si 1.86800 * 119.99742 * 192.40222 * 5 3 2 8 8 H 1.48505 * 109.47207 * 89.99845 * 7 5 3 9 9 H 1.48507 * 109.47234 * 209.99676 * 7 5 3 10 10 H 1.48498 * 109.47235 * 329.99894 * 7 5 3 11 11 C 1.46500 * 120.00029 * 180.02562 * 2 1 3 12 12 H 1.09001 * 109.49620 * 180.02562 * 11 2 1 13 13 C 1.53038 * 109.49983 * 60.00185 * 11 2 1 14 14 C 1.53044 * 109.53950 * 178.65211 * 13 11 2 15 15 C 1.53191 * 109.31367 * 61.36302 * 14 13 11 16 16 N 1.46928 * 108.77427 * 305.36965 * 15 14 13 17 17 C 1.34784 * 120.62449 * 233.33555 * 16 15 14 18 18 O 1.21285 * 119.99605 * 180.02562 * 17 16 15 19 19 C 1.50697 * 119.99897 * 359.97438 * 17 16 15 20 20 C 1.53001 * 109.46632 * 180.02562 * 19 17 16 21 21 C 1.50704 * 109.46913 * 180.02562 * 20 19 17 22 22 C 1.38679 * 120.41703 * 269.71992 * 21 20 19 23 23 C 1.38626 * 118.41777 * 179.78398 * 22 21 20 24 24 C 1.38230 * 119.16075 * 0.51368 * 23 22 21 25 25 N 1.31846 * 120.76394 * 359.72701 * 24 23 22 26 26 C 1.31883 * 121.72763 * 0.02562 * 25 24 23 27 27 C 1.46925 * 118.74288 * 53.60368 * 16 15 14 28 28 H 1.08997 * 109.47602 * 274.30189 * 1 2 3 29 29 H 1.09001 * 109.47432 * 34.30935 * 1 2 3 30 30 H 1.09005 * 109.46930 * 154.30340 * 1 2 3 31 31 H 0.96997 * 119.99903 * 180.02562 * 6 5 3 32 32 H 1.08998 * 109.46208 * 58.63109 * 13 11 2 33 33 H 1.09002 * 109.45550 * 298.66951 * 13 11 2 34 34 H 1.09005 * 109.49616 * 301.40933 * 14 13 11 35 35 H 1.08995 * 109.49545 * 181.31515 * 14 13 11 36 36 H 1.08994 * 109.58853 * 185.57767 * 15 14 13 37 37 H 1.09001 * 109.58444 * 65.14989 * 15 14 13 38 38 H 1.08994 * 109.47687 * 300.00513 * 19 17 16 39 39 H 1.09004 * 109.46957 * 60.00838 * 19 17 16 40 40 H 1.09003 * 109.47633 * 300.00022 * 20 19 17 41 41 H 1.08998 * 109.47626 * 60.00509 * 20 19 17 42 42 H 1.08000 * 120.78877 * 0.02562 * 22 21 20 43 43 H 1.08001 * 120.41655 * 180.21979 * 23 22 21 44 44 H 1.07998 * 119.61562 * 179.74491 * 24 23 22 45 45 H 1.08002 * 119.61843 * 180.02562 * 26 25 24 46 46 H 1.09003 * 109.58464 * 66.18179 * 27 16 15 47 47 H 1.08999 * 109.58396 * 186.60398 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1703 1.2202 -0.3514 5 6 1.5318 2.3440 0.4517 6 7 0.3898 2.2700 1.1018 7 14 2.3213 4.0074 0.1368 8 1 1.8347 4.5493 -1.1574 9 1 1.9593 4.9425 1.2323 10 1 3.7973 3.8530 0.0852 11 6 2.1974 -1.2687 -0.0006 12 1 3.2692 -1.0700 0.0000 13 6 1.8282 -2.0712 -1.2503 14 6 2.6182 -3.3819 -1.2689 15 6 2.2510 -4.2123 -0.0350 16 7 2.4666 -3.3947 1.1665 17 6 3.2335 -3.8489 2.1776 18 8 3.4034 -3.1646 3.1644 19 6 3.8788 -5.2074 2.0823 20 6 4.6878 -5.4778 3.3524 21 6 5.3337 -6.8361 3.2569 22 6 4.6737 -7.9620 3.7260 23 6 5.3044 -9.1913 3.6133 24 6 6.5656 -9.2521 3.0509 25 7 7.1653 -8.1599 2.6199 26 6 6.5935 -6.9746 2.7065 27 6 1.8255 -2.0752 1.2476 28 1 -0.3634 0.0771 1.0247 29 1 -0.3634 0.8488 -0.5792 30 1 -0.3633 -0.9261 -0.4456 31 1 -0.0421 3.0793 1.4171 32 1 2.0693 -1.4893 -2.1399 33 1 0.7606 -2.2908 -1.2384 34 1 3.6860 -3.1633 -1.2557 35 1 2.3722 -3.9421 -2.1709 36 1 2.8819 -5.1000 0.0089 37 1 1.2035 -4.5083 -0.0924 38 1 3.1071 -5.9695 1.9742 39 1 4.5408 -5.2352 1.2167 40 1 5.4595 -4.7158 3.4610 41 1 4.0256 -5.4501 4.2178 42 1 3.6901 -7.8834 4.1651 43 1 4.8184 -10.0894 3.9648 44 1 7.0655 -10.2055 2.9632 45 1 7.1157 -6.1022 2.3423 46 1 0.7433 -2.1970 1.2949 47 1 2.1757 -1.5529 2.1380 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027483072.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:41 Heat of formation + Delta-G solvation = 16.434903 kcal Electronic energy + Delta-G solvation = -26387.012638 eV Core-core repulsion = 22763.098340 eV Total energy + Delta-G solvation = -3623.914298 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.54704 -39.87598 -37.53156 -35.09089 -34.74132 -32.44386 -32.27597 -31.30308 -30.35733 -28.67975 -26.03449 -25.86748 -24.42260 -23.84413 -23.35545 -21.81051 -21.58680 -19.46503 -18.53530 -17.47084 -17.03736 -16.73619 -16.71198 -15.63162 -15.46582 -15.21117 -14.91578 -14.22262 -14.15928 -14.00928 -13.77337 -13.60875 -13.35274 -13.31794 -13.15884 -12.65545 -12.49306 -12.32919 -12.22888 -11.94456 -11.74590 -11.25026 -11.16361 -11.01230 -10.80575 -10.63742 -10.40643 -10.34079 -10.17453 -10.09663 -9.86532 -9.76494 -9.72052 -9.55648 -9.19597 -8.58359 -8.31245 -6.76605 -5.71999 -3.17993 0.80172 0.98109 2.82432 3.19225 3.39847 3.45855 3.47412 3.53228 4.14649 4.40218 4.49569 4.51855 4.67857 4.71321 4.77695 4.86837 4.96592 5.00070 5.12087 5.25000 5.30217 5.32821 5.44247 5.47921 5.52788 5.59635 5.64712 5.75401 5.80444 5.90273 5.95488 5.99520 6.07014 6.11999 6.22637 6.37113 6.41464 6.49513 6.67647 6.77505 6.92955 6.98334 7.38534 7.67847 7.68538 7.72031 7.81828 8.37612 8.42581 9.23768 9.86296 10.34458 11.32806 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023191 B = 0.002526 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.082014 B =11080.755352 C =11436.176356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.592 5.592 3 C -0.255 4.255 4 H 0.069 0.931 5 C 0.002 3.998 6 N -0.907 5.907 7 Si 0.906 3.094 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.169 3.831 12 H 0.064 0.936 13 C -0.134 4.134 14 C -0.131 4.131 15 C 0.108 3.892 16 N -0.607 5.607 17 C 0.509 3.491 18 O -0.542 6.542 19 C -0.133 4.133 20 C -0.063 4.063 21 C -0.129 4.129 22 C -0.074 4.074 23 C -0.171 4.171 24 C 0.089 3.911 25 N -0.484 5.484 26 C 0.101 3.899 27 C 0.098 3.902 28 H 0.028 0.972 29 H 0.044 0.956 30 H -0.001 1.001 31 H 0.253 0.747 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.153 0.847 45 H 0.156 0.844 46 H 0.060 0.940 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.961 -23.412 0.176 24.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.314 5.314 3 C -0.384 4.384 4 H 0.087 0.913 5 C -0.196 4.196 6 N -0.552 5.552 7 Si 0.736 3.264 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.060 3.940 12 H 0.082 0.918 13 C -0.173 4.173 14 C -0.170 4.170 15 C -0.016 4.016 16 N -0.341 5.341 17 C 0.296 3.704 18 O -0.419 6.419 19 C -0.173 4.173 20 C -0.101 4.101 21 C -0.131 4.131 22 C -0.100 4.100 23 C -0.191 4.191 24 C -0.068 4.068 25 N -0.192 5.192 26 C -0.055 4.055 27 C -0.026 4.026 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.017 0.983 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.171 0.829 45 H 0.173 0.827 46 H 0.078 0.922 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.764 -22.928 0.405 23.908 hybrid contribution -0.680 0.924 0.189 1.162 sum 6.084 -22.004 0.595 22.838 Atomic orbital electron populations 1.20791 0.82568 0.95600 0.99302 1.43946 1.01875 1.00050 1.85528 1.19231 0.97863 0.85135 1.36212 0.91350 1.25031 0.97806 0.98556 0.98231 1.70071 1.18336 1.27070 1.39695 0.86224 0.78807 0.84003 0.77322 1.21521 1.21724 1.20485 1.20618 0.96439 0.86200 0.90771 0.91786 1.22092 0.99628 0.94983 1.00629 1.21905 1.01065 0.97296 0.96745 1.21734 1.01252 0.93567 0.85013 1.48324 1.49219 1.19137 1.17420 1.20553 0.78899 0.88142 0.82793 1.90718 1.61354 1.58788 1.31053 1.21666 1.00368 0.95416 0.99810 1.20303 0.99744 0.92236 0.97846 1.20996 0.96167 0.96523 0.99388 1.21569 0.99859 0.91966 0.96573 1.22156 0.96942 0.98650 1.01358 1.22762 0.92451 0.97102 0.94491 1.67700 1.36358 0.98983 1.16193 1.22761 0.92120 0.95364 0.95301 1.22531 0.96636 0.81036 1.02362 0.95336 0.93700 0.98300 0.93718 0.91705 0.92277 0.91718 0.91278 0.90375 0.91562 0.89136 0.88877 0.89566 0.89819 0.84770 0.84845 0.82938 0.82679 0.92192 0.89066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.92 7.91 59.84 0.47 4.39 16 2 N -0.59 -14.66 2.82 -173.36 -0.49 -15.15 16 3 C -0.25 -7.02 9.60 -15.06 -0.14 -7.16 16 4 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 5 C 0.00 0.06 5.11 -17.43 -0.09 -0.03 16 6 N -0.91 -26.55 10.63 55.49 0.59 -25.96 16 7 Si 0.91 22.09 29.57 -169.99 -5.03 17.06 16 8 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 9 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 C 0.17 3.41 2.74 -67.81 -0.19 3.22 16 12 H 0.06 1.37 7.86 -51.93 -0.41 0.97 16 13 C -0.13 -2.15 5.13 -26.69 -0.14 -2.29 16 14 C -0.13 -1.57 6.08 -26.61 -0.16 -1.73 16 15 C 0.11 1.20 6.34 -3.71 -0.02 1.17 16 16 N -0.61 -9.12 2.97 -172.77 -0.51 -9.63 16 17 C 0.51 7.61 7.70 -10.98 -0.08 7.53 16 18 O -0.54 -10.47 15.40 5.55 0.09 -10.39 16 19 C -0.13 -1.31 4.03 -27.88 -0.11 -1.43 16 20 C -0.06 -0.62 4.66 -27.88 -0.13 -0.75 16 21 C -0.13 -1.15 5.15 -104.48 -0.54 -1.69 16 22 C -0.07 -0.57 9.86 -39.28 -0.39 -0.96 16 23 C -0.17 -1.20 10.11 -39.44 -0.40 -1.60 16 24 C 0.09 0.72 11.18 -17.55 -0.20 0.53 16 25 N -0.48 -5.04 10.36 -13.26 -0.14 -5.17 16 26 C 0.10 0.97 10.86 -17.55 -0.19 0.78 16 27 C 0.10 1.87 5.79 -3.71 -0.02 1.85 16 28 H 0.03 0.75 7.41 -51.93 -0.39 0.37 16 29 H 0.04 1.17 7.20 -51.93 -0.37 0.80 16 30 H 0.00 -0.03 6.46 -51.93 -0.34 -0.37 16 31 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 0.95 6.72 -51.93 -0.35 0.60 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.65 5.94 -51.93 -0.31 0.34 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.73 7.95 -51.93 -0.41 0.32 16 39 H 0.09 0.80 7.69 -51.93 -0.40 0.40 16 40 H 0.09 0.92 8.05 -51.93 -0.42 0.51 16 41 H 0.08 0.87 8.05 -51.93 -0.42 0.46 16 42 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 44 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 46 H 0.06 1.16 7.51 -51.93 -0.39 0.77 16 47 H 0.09 2.08 7.01 -51.93 -0.36 1.72 16 LS Contribution 374.09 15.07 5.64 5.64 Total: -1.00 -33.14 374.09 -9.67 -42.82 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -7.49 Total: -1.05 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -2.33 Total: 1.84 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.55 Total: -55.92 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.14 -9.67 -42.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027483072.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.250 kcal (2) G-P(sol) polarization free energy of solvation -33.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds