Wall clock time and date at job start Tue Mar 31 2020 11:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36938 * 120.00191 * 2 1 4 4 H 1.07993 * 120.00423 * 202.06788 * 3 2 1 5 5 C 1.38811 * 119.99493 * 22.06985 * 3 2 1 6 6 N 1.31621 * 120.00561 * 12.40099 * 5 3 2 7 7 Si 1.86800 * 119.99742 * 192.40222 * 5 3 2 8 8 H 1.48505 * 109.47207 * 89.99845 * 7 5 3 9 9 H 1.48507 * 109.47234 * 209.99676 * 7 5 3 10 10 H 1.48498 * 109.47235 * 329.99894 * 7 5 3 11 11 C 1.46500 * 120.00029 * 180.02562 * 2 1 3 12 12 H 1.09001 * 109.49620 * 180.02562 * 11 2 1 13 13 C 1.53038 * 109.49983 * 60.00185 * 11 2 1 14 14 C 1.53044 * 109.53950 * 178.65211 * 13 11 2 15 15 C 1.53191 * 109.31367 * 61.36302 * 14 13 11 16 16 N 1.46928 * 108.77427 * 305.36965 * 15 14 13 17 17 C 1.34784 * 120.62449 * 233.33555 * 16 15 14 18 18 O 1.21285 * 119.99605 * 180.02562 * 17 16 15 19 19 C 1.50697 * 119.99897 * 359.97438 * 17 16 15 20 20 C 1.53001 * 109.46632 * 180.02562 * 19 17 16 21 21 C 1.50704 * 109.46913 * 180.02562 * 20 19 17 22 22 C 1.38679 * 120.41703 * 269.71992 * 21 20 19 23 23 C 1.38626 * 118.41777 * 179.78398 * 22 21 20 24 24 C 1.38230 * 119.16075 * 0.51368 * 23 22 21 25 25 N 1.31846 * 120.76394 * 359.72701 * 24 23 22 26 26 C 1.31883 * 121.72763 * 0.02562 * 25 24 23 27 27 C 1.46925 * 118.74288 * 53.60368 * 16 15 14 28 28 H 1.08997 * 109.47602 * 274.30189 * 1 2 3 29 29 H 1.09001 * 109.47432 * 34.30935 * 1 2 3 30 30 H 1.09005 * 109.46930 * 154.30340 * 1 2 3 31 31 H 0.96997 * 119.99903 * 180.02562 * 6 5 3 32 32 H 1.08998 * 109.46208 * 58.63109 * 13 11 2 33 33 H 1.09002 * 109.45550 * 298.66951 * 13 11 2 34 34 H 1.09005 * 109.49616 * 301.40933 * 14 13 11 35 35 H 1.08995 * 109.49545 * 181.31515 * 14 13 11 36 36 H 1.08994 * 109.58853 * 185.57767 * 15 14 13 37 37 H 1.09001 * 109.58444 * 65.14989 * 15 14 13 38 38 H 1.08994 * 109.47687 * 300.00513 * 19 17 16 39 39 H 1.09004 * 109.46957 * 60.00838 * 19 17 16 40 40 H 1.09003 * 109.47633 * 300.00022 * 20 19 17 41 41 H 1.08998 * 109.47626 * 60.00509 * 20 19 17 42 42 H 1.08000 * 120.78877 * 0.02562 * 22 21 20 43 43 H 1.08001 * 120.41655 * 180.21979 * 23 22 21 44 44 H 1.07998 * 119.61562 * 179.74491 * 24 23 22 45 45 H 1.08002 * 119.61843 * 180.02562 * 26 25 24 46 46 H 1.09003 * 109.58464 * 66.18179 * 27 16 15 47 47 H 1.08999 * 109.58396 * 186.60398 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1703 1.2202 -0.3514 5 6 1.5318 2.3440 0.4517 6 7 0.3898 2.2700 1.1018 7 14 2.3213 4.0074 0.1368 8 1 1.8347 4.5493 -1.1574 9 1 1.9593 4.9425 1.2323 10 1 3.7973 3.8530 0.0852 11 6 2.1974 -1.2687 -0.0006 12 1 3.2692 -1.0700 0.0000 13 6 1.8282 -2.0712 -1.2503 14 6 2.6182 -3.3819 -1.2689 15 6 2.2510 -4.2123 -0.0350 16 7 2.4666 -3.3947 1.1665 17 6 3.2335 -3.8489 2.1776 18 8 3.4034 -3.1646 3.1644 19 6 3.8788 -5.2074 2.0823 20 6 4.6878 -5.4778 3.3524 21 6 5.3337 -6.8361 3.2569 22 6 4.6737 -7.9620 3.7260 23 6 5.3044 -9.1913 3.6133 24 6 6.5656 -9.2521 3.0509 25 7 7.1653 -8.1599 2.6199 26 6 6.5935 -6.9746 2.7065 27 6 1.8255 -2.0752 1.2476 28 1 -0.3634 0.0771 1.0247 29 1 -0.3634 0.8488 -0.5792 30 1 -0.3633 -0.9261 -0.4456 31 1 -0.0421 3.0793 1.4171 32 1 2.0693 -1.4893 -2.1399 33 1 0.7606 -2.2908 -1.2384 34 1 3.6860 -3.1633 -1.2557 35 1 2.3722 -3.9421 -2.1709 36 1 2.8819 -5.1000 0.0089 37 1 1.2035 -4.5083 -0.0924 38 1 3.1071 -5.9695 1.9742 39 1 4.5408 -5.2352 1.2167 40 1 5.4595 -4.7158 3.4610 41 1 4.0256 -5.4501 4.2178 42 1 3.6901 -7.8834 4.1651 43 1 4.8184 -10.0894 3.9648 44 1 7.0655 -10.2055 2.9632 45 1 7.1157 -6.1022 2.3423 46 1 0.7433 -2.1970 1.2949 47 1 2.1757 -1.5529 2.1380 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027483072.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:41 Heat of formation + Delta-G solvation = -3.670921 kcal Electronic energy + Delta-G solvation = -26387.884492 eV Core-core repulsion = 22763.098340 eV Total energy + Delta-G solvation = -3624.786152 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.39080 -40.89469 -38.96124 -36.77034 -35.54412 -33.97980 -32.94249 -32.80391 -31.36635 -30.12342 -28.07286 -26.92585 -25.62625 -24.85231 -24.44281 -23.04469 -22.48793 -20.91627 -19.78710 -18.80072 -18.30756 -17.82502 -17.41335 -17.03050 -16.80475 -16.43978 -15.91398 -15.67391 -15.32406 -15.21655 -14.96689 -14.61138 -14.53348 -14.39778 -14.08320 -13.89106 -13.86212 -13.64764 -13.46554 -13.19753 -12.87826 -12.82155 -12.48377 -12.47900 -12.21826 -12.13689 -12.08868 -11.98898 -11.73472 -11.63795 -11.38882 -10.84099 -10.66262 -10.65796 -10.33837 -9.85664 -9.66419 -8.78453 -7.85597 -5.33815 0.19873 0.38936 1.43580 1.44469 1.53558 1.66011 2.02704 2.49047 2.90357 3.27643 3.43285 3.61829 3.66489 3.91422 3.95845 3.99371 4.04452 4.11702 4.14168 4.15077 4.23195 4.32701 4.35992 4.38804 4.55246 4.65262 4.69142 4.74954 4.80049 4.88432 4.91784 4.95552 4.97527 5.06056 5.16105 5.17863 5.25986 5.26119 5.42477 5.42959 5.51701 5.56670 5.61852 5.70453 5.83914 6.30234 6.51340 7.07738 7.12391 7.22444 7.84632 8.26665 9.17152 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023191 B = 0.002526 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.082014 B =11080.755352 C =11436.176356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.610 5.610 3 C -0.264 4.264 4 H 0.067 0.933 5 C -0.054 4.054 6 N -0.938 5.938 7 Si 0.970 3.030 8 H -0.282 1.282 9 H -0.295 1.295 10 H -0.271 1.271 11 C 0.167 3.833 12 H 0.043 0.957 13 C -0.124 4.124 14 C -0.123 4.123 15 C 0.103 3.897 16 N -0.608 5.608 17 C 0.502 3.498 18 O -0.596 6.596 19 C -0.117 4.117 20 C -0.056 4.056 21 C -0.132 4.132 22 C -0.077 4.077 23 C -0.165 4.165 24 C 0.079 3.921 25 N -0.514 5.514 26 C 0.087 3.913 27 C 0.114 3.886 28 H -0.002 1.002 29 H 0.017 0.983 30 H 0.036 0.964 31 H 0.248 0.752 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.107 0.893 36 H 0.120 0.880 37 H 0.083 0.917 38 H 0.122 0.878 39 H 0.116 0.884 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.152 0.848 43 H 0.163 0.837 44 H 0.175 0.825 45 H 0.158 0.842 46 H 0.056 0.944 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.360 -26.896 -1.303 27.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.333 5.333 3 C -0.394 4.394 4 H 0.084 0.916 5 C -0.249 4.249 6 N -0.584 5.584 7 Si 0.798 3.202 8 H -0.208 1.208 9 H -0.222 1.222 10 H -0.196 1.196 11 C 0.059 3.941 12 H 0.061 0.939 13 C -0.163 4.163 14 C -0.162 4.162 15 C -0.018 4.018 16 N -0.341 5.341 17 C 0.292 3.708 18 O -0.477 6.477 19 C -0.157 4.157 20 C -0.095 4.095 21 C -0.134 4.134 22 C -0.103 4.103 23 C -0.184 4.184 24 C -0.077 4.077 25 N -0.222 5.222 26 C -0.070 4.070 27 C -0.011 4.011 28 H 0.016 0.984 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.126 0.874 36 H 0.138 0.862 37 H 0.101 0.899 38 H 0.140 0.860 39 H 0.134 0.866 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.170 0.830 43 H 0.181 0.819 44 H 0.192 0.808 45 H 0.175 0.825 46 H 0.075 0.925 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.186 -26.474 -1.117 27.454 hybrid contribution -0.763 1.903 0.680 2.160 sum 6.423 -24.571 -0.438 25.400 Atomic orbital electron populations 1.20486 0.82529 0.96184 0.97246 1.44182 1.02218 1.01078 1.85814 1.19532 0.97921 0.86613 1.35363 0.91566 1.25807 0.98607 1.01918 0.98598 1.70240 1.19703 1.27450 1.41057 0.85224 0.78256 0.79717 0.76995 1.20809 1.22182 1.19638 1.20782 0.94760 0.85214 0.93330 0.93879 1.21932 1.00575 0.96488 0.97289 1.21895 1.00157 0.95231 0.98911 1.22109 1.03387 0.93903 0.82422 1.48384 1.48750 1.17761 1.19166 1.21537 0.78038 0.89562 0.81676 1.90700 1.63068 1.60692 1.33264 1.21672 1.01083 0.92293 1.00640 1.20164 0.99111 0.92596 0.97622 1.20829 0.96109 0.96175 1.00243 1.21854 1.00606 0.91826 0.96013 1.22469 0.96371 0.99451 1.00130 1.23243 0.93135 0.97376 0.93988 1.67702 1.37355 0.99728 1.17447 1.22862 0.92581 0.95532 0.95979 1.21920 0.96374 0.83245 0.99577 0.98394 0.96388 0.94595 0.94249 0.92691 0.91862 0.91884 0.87447 0.86232 0.89860 0.86006 0.86565 0.91302 0.90777 0.83022 0.81906 0.80769 0.82462 0.92549 0.93946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.98 7.91 127.77 1.01 9.99 16 2 N -0.61 -31.15 2.82 -702.38 -1.98 -33.13 16 3 C -0.26 -15.01 9.60 84.03 0.81 -14.20 16 4 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 5 C -0.05 -3.14 5.11 84.86 0.43 -2.71 16 6 N -0.94 -57.11 10.63 21.65 0.23 -56.88 16 7 Si 0.97 46.58 29.57 68.60 2.03 48.61 16 8 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 9 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 C 0.17 6.83 2.74 45.07 0.12 6.95 16 12 H 0.04 1.91 7.86 -2.39 -0.02 1.89 16 13 C -0.12 -3.76 5.13 30.62 0.16 -3.60 16 14 C -0.12 -2.47 6.08 30.67 0.19 -2.28 16 15 C 0.10 1.85 6.34 86.36 0.55 2.40 16 16 N -0.61 -17.46 2.97 -818.90 -2.43 -19.90 16 17 C 0.50 14.64 7.70 87.65 0.67 15.32 16 18 O -0.60 -23.98 15.40 -3.04 -0.05 -24.03 16 19 C -0.12 -2.00 4.03 29.85 0.12 -1.88 16 20 C -0.06 -1.05 4.66 29.85 0.14 -0.91 16 21 C -0.13 -2.09 5.15 -19.77 -0.10 -2.19 16 22 C -0.08 -0.97 9.86 22.47 0.22 -0.75 16 23 C -0.16 -1.75 10.11 22.36 0.23 -1.53 16 24 C 0.08 1.09 11.18 84.69 0.95 2.04 16 25 N -0.51 -9.89 10.36 -195.85 -2.03 -11.91 16 26 C 0.09 1.55 10.86 84.67 0.92 2.47 16 27 C 0.11 4.49 5.79 86.36 0.50 4.99 16 28 H 0.00 -0.12 7.41 -2.39 -0.02 -0.14 16 29 H 0.02 0.95 7.20 -2.39 -0.02 0.94 16 30 H 0.04 1.48 6.46 -2.38 -0.02 1.47 16 31 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 32 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.88 6.72 -2.39 -0.02 1.86 16 34 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.12 1.25 5.94 -2.39 -0.01 1.24 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.12 1.39 7.95 -2.39 -0.02 1.37 16 39 H 0.12 1.52 7.69 -2.38 -0.02 1.50 16 40 H 0.07 1.50 8.05 -2.39 -0.02 1.48 16 41 H 0.07 1.51 8.05 -2.39 -0.02 1.49 16 42 H 0.15 1.33 8.06 -2.91 -0.02 1.30 16 43 H 0.16 0.73 8.06 -2.91 -0.02 0.70 16 44 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 45 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 46 H 0.06 2.23 7.51 -2.39 -0.02 2.21 16 47 H 0.04 2.07 7.01 -2.39 -0.02 2.05 16 Total: -1.00 -77.94 374.09 3.63 -74.31 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 0.95 Total: 8.82 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 6.91 Total: 14.12 kcal Atomic # 7 Polarization: -115.61 SS G_CDS: -6.21 Total: -121.82 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.05 Total: -24.03 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -77.94 3.63 -74.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027483072.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.637 kcal (2) G-P(sol) polarization free energy of solvation -77.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds