Wall clock time and date at job start Tue Mar 31 2020 11:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36942 * 120.00126 * 2 1 4 4 H 1.07993 * 120.00107 * 144.56979 * 3 2 1 5 5 C 1.38814 * 119.99697 * 324.56933 * 3 2 1 6 6 N 1.31616 * 120.00118 * 157.65587 * 5 3 2 7 7 Si 1.86805 * 119.99894 * 337.65267 * 5 3 2 8 8 H 1.48506 * 109.46719 * 95.56133 * 7 5 3 9 9 H 1.48503 * 109.47249 * 215.55906 * 7 5 3 10 10 H 1.48497 * 109.47442 * 335.56325 * 7 5 3 11 11 C 1.46507 * 120.00143 * 180.02562 * 2 1 3 12 12 H 1.09001 * 109.49692 * 180.02562 * 11 2 1 13 13 C 1.53039 * 109.50017 * 59.99619 * 11 2 1 14 14 C 1.53031 * 109.54115 * 178.65246 * 13 11 2 15 15 C 1.53201 * 109.31382 * 61.36347 * 14 13 11 16 16 N 1.46923 * 108.77214 * 305.36875 * 15 14 13 17 17 C 1.34781 * 120.62814 * 233.58058 * 16 15 14 18 18 O 1.21285 * 119.99781 * 179.97438 * 17 16 15 19 19 C 1.50697 * 119.99966 * 0.02562 * 17 16 15 20 20 C 1.53007 * 109.47105 * 179.97438 * 19 17 16 21 21 C 1.50694 * 109.46858 * 179.97438 * 20 19 17 22 22 C 1.38228 * 119.61305 * 125.00339 * 21 20 19 23 23 C 1.38636 * 119.16063 * 179.71880 * 22 21 20 24 24 C 1.38672 * 118.41890 * 0.02562 * 23 22 21 25 25 C 1.38184 * 119.16205 * 359.97438 * 24 23 22 26 26 N 1.31852 * 119.62384 * 304.72452 * 21 20 19 27 27 C 1.46923 * 118.74341 * 53.85753 * 16 15 14 28 28 H 1.08999 * 109.46891 * 268.02451 * 1 2 3 29 29 H 1.08991 * 109.47268 * 28.02947 * 1 2 3 30 30 H 1.09002 * 109.47197 * 148.03380 * 1 2 3 31 31 H 0.96999 * 120.00328 * 180.02562 * 6 5 3 32 32 H 1.09002 * 109.46167 * 58.62778 * 13 11 2 33 33 H 1.09004 * 109.45666 * 298.67645 * 13 11 2 34 34 H 1.09002 * 109.49964 * 301.41390 * 14 13 11 35 35 H 1.08995 * 109.50387 * 181.31386 * 14 13 11 36 36 H 1.09001 * 109.58739 * 185.58007 * 15 14 13 37 37 H 1.08996 * 109.70220 * 65.22311 * 15 14 13 38 38 H 1.08997 * 109.47579 * 60.00022 * 19 17 16 39 39 H 1.09000 * 109.46941 * 299.99754 * 19 17 16 40 40 H 1.09006 * 109.46803 * 59.99911 * 20 19 17 41 41 H 1.08992 * 109.47060 * 300.00128 * 20 19 17 42 42 H 1.08001 * 120.42361 * 359.70052 * 22 21 20 43 43 H 1.07998 * 120.79096 * 180.02562 * 23 22 21 44 44 H 1.07999 * 120.41924 * 180.02562 * 24 23 22 45 45 H 1.08001 * 119.61413 * 179.97438 * 25 24 23 46 46 H 1.09001 * 109.58508 * 65.92751 * 27 16 15 47 47 H 1.09000 * 109.58870 * 186.35190 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0796 1.2725 0.5422 5 6 1.6484 2.2768 -0.6969 6 7 2.0216 3.4955 -0.3687 7 14 0.4441 2.0149 -2.1007 8 1 -0.9446 2.1638 -1.5958 9 1 0.6952 3.0221 -3.1628 10 1 0.6240 0.6509 -2.6595 11 6 2.1975 -1.2688 -0.0006 12 1 3.2693 -1.0700 0.0000 13 6 1.8282 -2.0713 -1.2502 14 6 2.6181 -3.3819 -1.2688 15 6 2.2510 -4.2123 -0.0349 16 7 2.4667 -3.3947 1.1666 17 6 3.2377 -3.8467 2.1755 18 8 3.4084 -3.1620 3.1619 19 6 3.8885 -5.2023 2.0774 20 6 4.7024 -5.4703 3.3450 21 6 5.3526 -6.8262 3.2471 22 6 6.7213 -6.9403 3.4035 23 6 7.3090 -8.1930 3.3174 24 6 6.4944 -9.2889 3.0757 25 6 5.1337 -9.0974 2.9302 26 7 4.6089 -7.8907 3.0188 27 6 1.8211 -2.0775 1.2501 28 1 -0.3633 -0.0354 1.0271 29 1 -0.3633 0.9070 -0.4829 30 1 -0.3634 -0.8718 -0.5441 31 1 1.6710 4.2577 -0.8555 32 1 2.0691 -1.4894 -2.1399 33 1 0.7606 -2.2909 -1.2384 34 1 3.6859 -3.1633 -1.2557 35 1 2.3721 -3.9423 -2.1707 36 1 2.8820 -5.1001 0.0091 37 1 1.2041 -4.5105 -0.0908 38 1 4.5486 -5.2267 1.2104 39 1 3.1196 -5.9675 1.9703 40 1 4.0426 -5.4459 4.2123 41 1 5.4712 -4.7051 3.4517 42 1 7.3253 -6.0646 3.5900 43 1 8.3758 -8.3125 3.4358 44 1 6.9181 -10.2796 3.0029 45 1 4.4925 -9.9457 2.7414 46 1 0.7393 -2.2031 1.2956 47 1 2.1683 -1.5563 2.1422 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027520110.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:34 Heat of formation + Delta-G solvation = 23.150670 kcal Electronic energy + Delta-G solvation = -26433.294423 eV Core-core repulsion = 22809.671343 eV Total energy + Delta-G solvation = -3623.623081 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.58119 -39.90750 -37.61064 -35.24972 -34.32421 -32.65120 -32.34595 -31.53003 -30.59632 -29.24853 -26.23127 -25.98135 -24.56569 -23.81796 -23.44598 -21.85149 -21.58556 -19.48311 -18.60302 -17.47326 -16.82045 -16.73519 -16.53759 -15.84798 -15.58098 -15.45655 -15.23776 -14.50933 -14.22704 -14.09274 -13.79474 -13.71046 -13.49275 -13.30699 -13.00960 -12.55328 -12.48092 -12.45124 -12.28733 -12.21697 -12.04079 -11.82306 -11.29353 -11.24497 -11.01193 -10.67716 -10.47507 -10.35754 -10.19151 -10.10165 -9.93426 -9.72658 -9.58979 -9.51354 -9.23962 -8.65344 -8.30816 -6.85305 -5.97990 -3.38403 0.78917 0.96197 2.81719 3.15463 3.31059 3.46196 3.49802 3.50995 3.98705 4.35034 4.51792 4.52255 4.71215 4.75381 4.77993 4.82726 4.99428 5.02559 5.11781 5.15602 5.25986 5.28061 5.36334 5.41016 5.48302 5.53767 5.67347 5.69180 5.79928 5.85820 5.89706 5.94103 5.96123 6.03642 6.13428 6.22954 6.34462 6.39322 6.41437 6.51970 6.64229 6.72884 6.87260 6.91019 7.62490 7.69997 8.03884 8.35102 8.40350 8.97631 9.71211 10.09651 11.17603 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.029138 B = 0.002529 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.720549 B =11069.636024 C =11407.982749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.603 5.603 3 C -0.268 4.268 4 H 0.081 0.919 5 C 0.032 3.968 6 N -0.900 5.900 7 Si 0.885 3.115 8 H -0.288 1.288 9 H -0.304 1.304 10 H -0.270 1.270 11 C 0.168 3.832 12 H 0.074 0.926 13 C -0.138 4.138 14 C -0.132 4.132 15 C 0.108 3.892 16 N -0.608 5.608 17 C 0.512 3.488 18 O -0.543 6.543 19 C -0.128 4.128 20 C -0.055 4.055 21 C 0.135 3.865 22 C -0.169 4.169 23 C -0.074 4.074 24 C -0.183 4.183 25 C 0.102 3.898 26 N -0.482 5.482 27 C 0.099 3.901 28 H 0.017 0.983 29 H 0.045 0.955 30 H 0.031 0.969 31 H 0.263 0.737 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.136 0.864 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.155 0.845 46 H 0.060 0.940 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.574 -26.859 2.729 27.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.326 5.326 3 C -0.396 4.396 4 H 0.098 0.902 5 C -0.168 4.168 6 N -0.542 5.542 7 Si 0.716 3.284 8 H -0.216 1.216 9 H -0.232 1.232 10 H -0.195 1.195 11 C 0.060 3.940 12 H 0.093 0.907 13 C -0.178 4.178 14 C -0.170 4.170 15 C -0.015 4.015 16 N -0.341 5.341 17 C 0.300 3.700 18 O -0.421 6.421 19 C -0.169 4.169 20 C -0.093 4.093 21 C -0.003 4.003 22 C -0.189 4.189 23 C -0.100 4.100 24 C -0.203 4.203 25 C -0.056 4.056 26 N -0.192 5.192 27 C -0.024 4.024 28 H 0.035 0.965 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.154 0.846 43 H 0.151 0.849 44 H 0.151 0.849 45 H 0.172 0.828 46 H 0.078 0.922 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.752 -26.166 3.131 26.973 hybrid contribution 0.170 -0.230 -0.926 0.969 sum 5.922 -26.396 2.205 27.141 Atomic orbital electron populations 1.21334 0.84976 0.98997 0.98286 1.44048 1.00475 1.01592 1.86457 1.18820 1.08027 0.86323 1.26441 0.90191 1.25431 0.98292 0.95175 0.97915 1.69873 1.46216 0.97634 1.40436 0.86834 0.80387 0.77553 0.83601 1.21610 1.23212 1.19460 1.20815 0.96990 0.85544 0.90654 0.90744 1.22146 0.99466 0.95239 1.00945 1.21912 1.01186 0.97120 0.96819 1.21749 1.01389 0.93609 0.84790 1.48178 1.49150 1.19050 1.17750 1.20600 0.78656 0.88154 0.82599 1.90704 1.61592 1.58731 1.31050 1.21566 1.00638 0.95321 0.99346 1.20313 0.99907 0.90533 0.98574 1.21355 0.90548 0.94693 0.93693 1.22065 0.95818 0.98735 1.02234 1.21611 1.00486 0.92476 0.95387 1.22135 0.95402 0.99991 1.02751 1.22767 0.93143 0.94667 0.95000 1.67490 1.40449 0.98857 1.12366 1.22389 0.96504 0.81697 1.01859 0.96528 0.93679 0.95078 0.92709 0.91452 0.92506 0.91529 0.91241 0.90133 0.91513 0.89233 0.88083 0.89037 0.89335 0.84568 0.84868 0.84942 0.82792 0.92182 0.88902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.37 8.45 59.84 0.51 2.88 16 2 N -0.60 -14.33 2.42 -173.09 -0.42 -14.74 16 3 C -0.27 -7.56 9.85 -15.06 -0.15 -7.71 16 4 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 5 C 0.03 0.93 5.31 -17.43 -0.09 0.84 16 6 N -0.90 -27.77 13.97 55.49 0.78 -27.00 16 7 Si 0.89 22.34 24.94 -169.99 -4.24 18.10 16 8 H -0.29 -7.09 6.67 56.52 0.38 -6.71 16 9 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 C 0.17 3.31 2.76 -67.58 -0.19 3.12 16 12 H 0.07 1.59 7.89 -51.93 -0.41 1.18 16 13 C -0.14 -2.28 5.11 -26.70 -0.14 -2.41 16 14 C -0.13 -1.62 6.08 -26.61 -0.16 -1.78 16 15 C 0.11 1.21 6.34 -3.71 -0.02 1.19 16 16 N -0.61 -8.96 2.97 -172.50 -0.51 -9.47 16 17 C 0.51 7.67 7.70 -10.98 -0.08 7.59 16 18 O -0.54 -10.27 15.39 5.55 0.09 -10.18 16 19 C -0.13 -1.40 3.91 -27.88 -0.11 -1.51 16 20 C -0.06 -0.59 4.90 -27.88 -0.14 -0.73 16 21 C 0.13 1.34 6.17 -82.59 -0.51 0.83 16 22 C -0.17 -1.40 9.71 -39.44 -0.38 -1.78 16 23 C -0.07 -0.50 10.18 -39.27 -0.40 -0.90 16 24 C -0.18 -1.20 10.11 -39.44 -0.40 -1.60 16 25 C 0.10 0.80 11.18 -17.55 -0.20 0.61 16 26 N -0.48 -4.97 9.89 -9.48 -0.09 -5.06 16 27 C 0.10 1.77 5.81 -3.49 -0.02 1.75 16 28 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 1.07 3.08 -51.93 -0.16 0.91 16 30 H 0.03 0.59 6.46 -51.93 -0.34 0.25 16 31 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 0.91 6.73 -51.93 -0.35 0.56 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.71 5.93 -51.93 -0.31 0.40 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.86 7.69 -51.93 -0.40 0.46 16 39 H 0.10 1.03 7.75 -51.93 -0.40 0.63 16 40 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 41 H 0.09 0.94 7.83 -51.93 -0.41 0.53 16 42 H 0.14 0.92 7.95 -52.49 -0.42 0.50 16 43 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 44 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 45 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 46 H 0.06 1.04 7.53 -51.93 -0.39 0.65 16 47 H 0.09 1.93 7.00 -51.93 -0.36 1.56 16 LS Contribution 369.23 15.07 5.56 5.56 Total: -1.00 -34.00 369.23 -8.65 -42.64 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -7.33 Total: -0.25 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -2.48 Total: 0.39 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -0.25 Total: -56.27 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.24 Total: 18.10 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.00 -8.65 -42.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027520110.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.794 kcal (2) G-P(sol) polarization free energy of solvation -33.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds