Wall clock time and date at job start Tue Mar 31 2020 11:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36942 * 120.00126 * 2 1 4 4 H 1.07993 * 120.00107 * 144.56979 * 3 2 1 5 5 C 1.38814 * 119.99697 * 324.56933 * 3 2 1 6 6 N 1.31616 * 120.00118 * 157.65587 * 5 3 2 7 7 Si 1.86805 * 119.99894 * 337.65267 * 5 3 2 8 8 H 1.48506 * 109.46719 * 95.56133 * 7 5 3 9 9 H 1.48503 * 109.47249 * 215.55906 * 7 5 3 10 10 H 1.48497 * 109.47442 * 335.56325 * 7 5 3 11 11 C 1.46507 * 120.00143 * 180.02562 * 2 1 3 12 12 H 1.09001 * 109.49692 * 180.02562 * 11 2 1 13 13 C 1.53039 * 109.50017 * 59.99619 * 11 2 1 14 14 C 1.53031 * 109.54115 * 178.65246 * 13 11 2 15 15 C 1.53201 * 109.31382 * 61.36347 * 14 13 11 16 16 N 1.46923 * 108.77214 * 305.36875 * 15 14 13 17 17 C 1.34781 * 120.62814 * 233.58058 * 16 15 14 18 18 O 1.21285 * 119.99781 * 179.97438 * 17 16 15 19 19 C 1.50697 * 119.99966 * 0.02562 * 17 16 15 20 20 C 1.53007 * 109.47105 * 179.97438 * 19 17 16 21 21 C 1.50694 * 109.46858 * 179.97438 * 20 19 17 22 22 C 1.38228 * 119.61305 * 125.00339 * 21 20 19 23 23 C 1.38636 * 119.16063 * 179.71880 * 22 21 20 24 24 C 1.38672 * 118.41890 * 0.02562 * 23 22 21 25 25 C 1.38184 * 119.16205 * 359.97438 * 24 23 22 26 26 N 1.31852 * 119.62384 * 304.72452 * 21 20 19 27 27 C 1.46923 * 118.74341 * 53.85753 * 16 15 14 28 28 H 1.08999 * 109.46891 * 268.02451 * 1 2 3 29 29 H 1.08991 * 109.47268 * 28.02947 * 1 2 3 30 30 H 1.09002 * 109.47197 * 148.03380 * 1 2 3 31 31 H 0.96999 * 120.00328 * 180.02562 * 6 5 3 32 32 H 1.09002 * 109.46167 * 58.62778 * 13 11 2 33 33 H 1.09004 * 109.45666 * 298.67645 * 13 11 2 34 34 H 1.09002 * 109.49964 * 301.41390 * 14 13 11 35 35 H 1.08995 * 109.50387 * 181.31386 * 14 13 11 36 36 H 1.09001 * 109.58739 * 185.58007 * 15 14 13 37 37 H 1.08996 * 109.70220 * 65.22311 * 15 14 13 38 38 H 1.08997 * 109.47579 * 60.00022 * 19 17 16 39 39 H 1.09000 * 109.46941 * 299.99754 * 19 17 16 40 40 H 1.09006 * 109.46803 * 59.99911 * 20 19 17 41 41 H 1.08992 * 109.47060 * 300.00128 * 20 19 17 42 42 H 1.08001 * 120.42361 * 359.70052 * 22 21 20 43 43 H 1.07998 * 120.79096 * 180.02562 * 23 22 21 44 44 H 1.07999 * 120.41924 * 180.02562 * 24 23 22 45 45 H 1.08001 * 119.61413 * 179.97438 * 25 24 23 46 46 H 1.09001 * 109.58508 * 65.92751 * 27 16 15 47 47 H 1.09000 * 109.58870 * 186.35190 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0796 1.2725 0.5422 5 6 1.6484 2.2768 -0.6969 6 7 2.0216 3.4955 -0.3687 7 14 0.4441 2.0149 -2.1007 8 1 -0.9446 2.1638 -1.5958 9 1 0.6952 3.0221 -3.1628 10 1 0.6240 0.6509 -2.6595 11 6 2.1975 -1.2688 -0.0006 12 1 3.2693 -1.0700 0.0000 13 6 1.8282 -2.0713 -1.2502 14 6 2.6181 -3.3819 -1.2688 15 6 2.2510 -4.2123 -0.0349 16 7 2.4667 -3.3947 1.1666 17 6 3.2377 -3.8467 2.1755 18 8 3.4084 -3.1620 3.1619 19 6 3.8885 -5.2023 2.0774 20 6 4.7024 -5.4703 3.3450 21 6 5.3526 -6.8262 3.2471 22 6 6.7213 -6.9403 3.4035 23 6 7.3090 -8.1930 3.3174 24 6 6.4944 -9.2889 3.0757 25 6 5.1337 -9.0974 2.9302 26 7 4.6089 -7.8907 3.0188 27 6 1.8211 -2.0775 1.2501 28 1 -0.3633 -0.0354 1.0271 29 1 -0.3633 0.9070 -0.4829 30 1 -0.3634 -0.8718 -0.5441 31 1 1.6710 4.2577 -0.8555 32 1 2.0691 -1.4894 -2.1399 33 1 0.7606 -2.2909 -1.2384 34 1 3.6859 -3.1633 -1.2557 35 1 2.3721 -3.9423 -2.1707 36 1 2.8820 -5.1001 0.0091 37 1 1.2041 -4.5105 -0.0908 38 1 4.5486 -5.2267 1.2104 39 1 3.1196 -5.9675 1.9703 40 1 4.0426 -5.4459 4.2123 41 1 5.4712 -4.7051 3.4517 42 1 7.3253 -6.0646 3.5900 43 1 8.3758 -8.3125 3.4358 44 1 6.9181 -10.2796 3.0029 45 1 4.4925 -9.9457 2.7414 46 1 0.7393 -2.2031 1.2956 47 1 2.1683 -1.5563 2.1422 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027520110.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:33 Heat of formation + Delta-G solvation = 1.209596 kcal Electronic energy + Delta-G solvation = -26434.245860 eV Core-core repulsion = 22809.671343 eV Total energy + Delta-G solvation = -3624.574517 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.41798 -40.90611 -39.04589 -36.86793 -35.14244 -34.08409 -33.22548 -33.08983 -31.61566 -30.50560 -28.09712 -27.06262 -25.81604 -24.96951 -24.31384 -23.08074 -22.48778 -20.94311 -19.81369 -18.91734 -18.40535 -17.53857 -17.42113 -17.20396 -16.79664 -16.50570 -16.17940 -15.92348 -15.40440 -15.27386 -15.15082 -14.86525 -14.48921 -14.35994 -14.22454 -14.06374 -13.93957 -13.77516 -13.66985 -13.52078 -13.07442 -12.81948 -12.60054 -12.44384 -12.19131 -12.12723 -12.07544 -11.84833 -11.78792 -11.67727 -11.32896 -10.88532 -10.75013 -10.66101 -10.32034 -9.85301 -9.70443 -8.79944 -8.22490 -5.60592 0.20985 0.41354 1.29883 1.40603 1.53323 1.63277 1.99477 2.40282 2.89565 3.02931 3.28480 3.33461 3.59649 3.84194 3.95133 3.99894 4.09331 4.09728 4.15112 4.19002 4.23728 4.30322 4.35446 4.36978 4.49732 4.54872 4.62080 4.73035 4.75686 4.78388 4.85539 4.88355 4.89714 4.96472 4.97602 5.02916 5.10818 5.15214 5.31764 5.33927 5.40708 5.46942 5.51240 5.85174 5.88405 6.12291 6.46695 6.92757 7.09741 7.19026 7.58585 7.98119 8.97599 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.029138 B = 0.002529 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.720549 B =11069.636024 C =11407.982749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.617 5.617 3 C -0.263 4.263 4 H 0.031 0.969 5 C -0.028 4.028 6 N -0.952 5.952 7 Si 0.960 3.040 8 H -0.274 1.274 9 H -0.310 1.310 10 H -0.250 1.250 11 C 0.167 3.833 12 H 0.043 0.957 13 C -0.130 4.130 14 C -0.124 4.124 15 C 0.105 3.895 16 N -0.608 5.608 17 C 0.506 3.494 18 O -0.593 6.593 19 C -0.112 4.112 20 C -0.051 4.051 21 C 0.115 3.885 22 C -0.179 4.179 23 C -0.076 4.076 24 C -0.176 4.176 25 C 0.089 3.911 26 N -0.507 5.507 27 C 0.113 3.887 28 H 0.021 0.979 29 H 0.029 0.971 30 H 0.069 0.931 31 H 0.264 0.736 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.144 0.856 43 H 0.159 0.841 44 H 0.163 0.837 45 H 0.177 0.823 46 H 0.072 0.928 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.863 -31.377 0.698 31.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.341 5.341 3 C -0.393 4.393 4 H 0.049 0.951 5 C -0.224 4.224 6 N -0.596 5.596 7 Si 0.788 3.212 8 H -0.201 1.201 9 H -0.239 1.239 10 H -0.173 1.173 11 C 0.060 3.940 12 H 0.061 0.939 13 C -0.170 4.170 14 C -0.162 4.162 15 C -0.017 4.017 16 N -0.341 5.341 17 C 0.296 3.704 18 O -0.474 6.474 19 C -0.152 4.152 20 C -0.089 4.089 21 C -0.022 4.022 22 C -0.199 4.199 23 C -0.102 4.102 24 C -0.195 4.195 25 C -0.068 4.068 26 N -0.217 5.217 27 C -0.012 4.012 28 H 0.039 0.961 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.125 0.875 36 H 0.132 0.868 37 H 0.106 0.894 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.162 0.838 43 H 0.177 0.823 44 H 0.180 0.820 45 H 0.194 0.806 46 H 0.090 0.910 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.032 -30.758 1.081 31.185 hybrid contribution 0.500 1.106 -0.157 1.224 sum 5.532 -29.652 0.923 30.178 Atomic orbital electron populations 1.21417 0.83444 0.99825 0.99053 1.44125 1.01525 1.01506 1.86923 1.18633 1.06740 0.88553 1.25376 0.95079 1.26142 1.01313 0.94529 1.00402 1.70020 1.48964 0.98693 1.41940 0.85638 0.78277 0.78013 0.79281 1.20133 1.23916 1.17331 1.20879 0.94920 0.84699 0.93487 0.93878 1.22006 1.00987 0.96513 0.97465 1.21892 1.00109 0.95243 0.98985 1.22082 1.03557 0.93716 0.82301 1.48287 1.48609 1.18000 1.19168 1.21413 0.78007 0.89257 0.81754 1.90685 1.63182 1.60407 1.33112 1.21515 1.00953 0.92486 1.00198 1.20184 0.99405 0.91493 0.97855 1.21178 0.91237 0.94117 0.95631 1.22237 0.95362 1.00005 1.02268 1.21982 1.01945 0.91864 0.94433 1.22501 0.94872 1.01282 1.00892 1.23241 0.94368 0.94474 0.94765 1.67426 1.41237 0.99673 1.13323 1.21940 0.97104 0.83169 0.99025 0.96088 0.95306 0.91227 0.92717 0.93249 0.91041 0.92153 0.87535 0.86801 0.89390 0.87134 0.86521 0.90999 0.90081 0.83834 0.82307 0.81971 0.80577 0.91001 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.49 8.45 127.77 1.08 5.57 16 2 N -0.62 -29.72 2.42 -701.54 -1.69 -31.41 16 3 C -0.26 -15.60 9.85 84.03 0.83 -14.78 16 4 H 0.03 2.09 8.06 -2.91 -0.02 2.07 16 5 C -0.03 -1.67 5.31 84.86 0.45 -1.22 16 6 N -0.95 -61.30 13.97 21.65 0.30 -61.00 16 7 Si 0.96 46.61 24.94 68.60 1.71 48.32 16 8 H -0.27 -12.63 6.67 99.48 0.66 -11.96 16 9 H -0.31 -15.29 7.11 99.48 0.71 -14.58 16 10 H -0.25 -11.19 7.11 99.48 0.71 -10.48 16 11 C 0.17 6.63 2.76 45.21 0.12 6.76 16 12 H 0.04 1.94 7.89 -2.39 -0.02 1.92 16 13 C -0.13 -3.96 5.11 30.62 0.16 -3.81 16 14 C -0.12 -2.57 6.08 30.67 0.19 -2.38 16 15 C 0.10 1.93 6.34 86.37 0.55 2.48 16 16 N -0.61 -17.19 2.97 -818.06 -2.43 -19.62 16 17 C 0.51 15.12 7.70 87.66 0.67 15.79 16 18 O -0.59 -23.61 15.39 -3.04 -0.05 -23.65 16 19 C -0.11 -2.27 3.91 29.85 0.12 -2.15 16 20 C -0.05 -1.10 4.90 29.85 0.15 -0.96 16 21 C 0.12 2.19 6.17 42.55 0.26 2.45 16 22 C -0.18 -2.73 9.71 22.36 0.22 -2.51 16 23 C -0.08 -0.84 10.18 22.47 0.23 -0.61 16 24 C -0.18 -1.73 10.11 22.36 0.23 -1.51 16 25 C 0.09 1.17 11.18 84.67 0.95 2.11 16 26 N -0.51 -9.57 9.89 -183.89 -1.82 -11.39 16 27 C 0.11 4.06 5.81 86.51 0.50 4.57 16 28 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.03 1.31 3.08 -2.39 -0.01 1.31 16 30 H 0.07 2.39 6.46 -2.39 -0.02 2.37 16 31 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.07 1.98 6.73 -2.39 -0.02 1.96 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 35 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.11 1.43 5.93 -2.39 -0.01 1.41 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.11 1.81 7.69 -2.39 -0.02 1.80 16 39 H 0.12 2.06 7.75 -2.39 -0.02 2.04 16 40 H 0.07 1.79 8.10 -2.38 -0.02 1.77 16 41 H 0.08 1.81 7.83 -2.39 -0.02 1.79 16 42 H 0.14 1.83 7.95 -2.91 -0.02 1.81 16 43 H 0.16 0.86 8.06 -2.91 -0.02 0.83 16 44 H 0.16 0.58 8.06 -2.91 -0.02 0.55 16 45 H 0.18 1.34 8.06 -2.91 -0.02 1.31 16 46 H 0.07 2.41 7.53 -2.39 -0.02 2.40 16 47 H 0.05 2.28 7.00 -2.39 -0.02 2.26 16 Total: -1.00 -80.07 369.23 3.63 -76.44 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.91 Total: 12.50 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 6.69 Total: 9.81 kcal Atomic # 7 Polarization: -117.78 SS G_CDS: -5.64 Total: -123.41 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.05 Total: -23.65 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 1.71 Total: 48.32 kcal Total: -80.07 3.63 -76.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027520110.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.651 kcal (2) G-P(sol) polarization free energy of solvation -80.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds