Wall clock time and date at job start Tue Mar 31 2020 11:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36942 * 119.99453 * 2 1 4 4 H 1.08004 * 119.99323 * 204.23637 * 3 2 1 5 5 C 1.38807 * 120.00153 * 24.24028 * 3 2 1 6 6 N 1.31613 * 120.00393 * 14.50293 * 5 3 2 7 7 Si 1.86804 * 119.99632 * 194.50239 * 5 3 2 8 8 H 1.48499 * 109.47107 * 90.00016 * 7 5 3 9 9 H 1.48498 * 109.47120 * 209.99856 * 7 5 3 10 10 H 1.48494 * 109.47583 * 330.00207 * 7 5 3 11 11 C 1.46493 * 120.00211 * 179.97438 * 2 1 3 12 12 H 1.09001 * 109.50207 * 179.97438 * 11 2 1 13 13 C 1.53042 * 109.49911 * 300.00297 * 11 2 1 14 14 C 1.53042 * 109.54131 * 181.31802 * 13 11 2 15 15 C 1.53193 * 109.30962 * 298.63295 * 14 13 11 16 16 N 1.46928 * 108.77630 * 54.63414 * 15 14 13 17 17 C 1.34776 * 120.62843 * 126.36545 * 16 15 14 18 18 O 1.21628 * 119.99862 * 184.92811 * 17 16 15 19 19 C 1.47263 * 120.00115 * 4.92975 * 17 16 15 20 20 C 1.46686 * 126.94140 * 34.75011 * 19 17 16 21 21 C 1.34491 * 106.32792 * 179.97438 * 20 19 17 22 22 N 1.36442 * 108.85954 * 359.73876 * 21 20 19 23 23 H 0.96996 * 124.85300 * 180.26373 * 22 21 20 24 24 C 1.34665 * 110.29820 * 0.44242 * 22 21 20 25 25 C 1.50696 * 125.80265 * 179.82421 * 24 22 21 26 26 C 1.52998 * 117.49787 * 299.69326 * 25 24 22 27 27 C 1.52990 * 60.00194 * 107.48998 * 26 25 24 28 28 C 1.46919 * 118.73888 * 306.64463 * 16 15 14 29 29 H 1.08988 * 109.47301 * 272.78233 * 1 2 3 30 30 H 1.09005 * 109.47204 * 32.78781 * 1 2 3 31 31 H 1.09005 * 109.46808 * 152.78120 * 1 2 3 32 32 H 0.97001 * 120.00112 * 179.97438 * 6 5 3 33 33 H 1.09005 * 109.45869 * 61.29125 * 13 11 2 34 34 H 1.08999 * 109.45629 * 301.33854 * 13 11 2 35 35 H 1.08994 * 109.49763 * 178.68156 * 14 13 11 36 36 H 1.08991 * 109.49588 * 58.58187 * 14 13 11 37 37 H 1.08995 * 109.58701 * 294.85082 * 15 14 13 38 38 H 1.08992 * 109.70260 * 174.49105 * 15 14 13 39 39 H 1.07990 * 126.83487 * 359.94450 * 20 19 17 40 40 H 1.08002 * 125.56890 * 180.02562 * 21 20 19 41 41 H 1.08997 * 115.56497 * 154.00544 * 25 24 22 42 42 H 1.09003 * 117.49782 * 359.97438 * 26 25 24 43 43 H 1.09007 * 117.50041 * 214.97872 * 26 25 24 44 44 H 1.08998 * 117.50203 * 107.49126 * 27 26 25 45 45 H 1.09006 * 117.49916 * 252.48994 * 27 26 25 46 46 H 1.09005 * 109.58790 * 173.14566 * 28 16 15 47 47 H 1.09000 * 109.58862 * 293.56863 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1583 1.2272 -0.3840 5 6 1.5473 2.3351 0.4935 6 7 0.4498 2.2452 1.2143 7 14 2.2946 4.0091 0.1346 8 1 1.7204 4.5478 -1.1244 9 1 1.9912 4.9368 1.2537 10 1 3.7662 3.8735 -0.0108 11 6 2.1976 -1.2686 0.0006 12 1 3.2693 -1.0700 0.0000 13 6 1.8283 -2.0712 1.2503 14 6 2.6177 -3.3822 1.2685 15 6 2.2498 -4.2123 0.0347 16 7 2.4655 -3.3946 -1.1669 17 6 3.2367 -3.8465 -2.1756 18 8 3.4808 -3.1257 -3.1244 19 6 3.7838 -5.2129 -2.1290 20 6 3.1374 -6.4026 -1.5646 21 6 3.9982 -7.4206 -1.7419 22 7 5.1130 -6.9508 -2.3729 23 1 5.8805 -7.4910 -2.6176 24 6 4.9971 -5.6292 -2.6037 25 6 6.0264 -4.7582 -3.2766 26 6 7.4045 -4.6570 -2.6197 27 6 7.2311 -5.4526 -3.9149 28 6 1.8295 -2.0725 -1.2452 29 1 -0.3633 0.0499 1.0263 30 1 -0.3634 0.8640 -0.5565 31 1 -0.3633 -0.9139 -0.4701 32 1 0.0291 3.0482 1.5595 33 1 0.7605 -2.2903 1.2387 34 1 2.0698 -1.4895 2.1398 35 1 2.3717 -3.9424 2.1705 36 1 3.6855 -3.1640 1.2550 37 1 1.2023 -4.5078 0.0922 38 1 2.8784 -5.1015 -0.0108 39 1 2.1643 -6.4512 -1.0989 40 1 3.8320 -8.4439 -1.4390 41 1 5.6383 -3.8680 -3.7715 42 1 7.5664 -5.2202 -1.7005 43 1 7.9229 -3.7002 -2.6823 44 1 7.6354 -5.0194 -4.8297 45 1 7.2794 -6.5396 -3.8482 46 1 2.1828 -1.5491 -2.1337 47 1 0.7470 -2.1901 -1.2941 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027547402.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:19 Heat of formation + Delta-G solvation = 66.360613 kcal Electronic energy + Delta-G solvation = -27290.909049 eV Core-core repulsion = 23669.159692 eV Total energy + Delta-G solvation = -3621.749357 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.53597 -39.36170 -37.18208 -37.01248 -34.94428 -32.29998 -31.34596 -30.94624 -29.32324 -28.57799 -25.93361 -25.32181 -23.69124 -22.89606 -22.70357 -21.84684 -21.30606 -20.66962 -19.02759 -18.20867 -17.82375 -16.65003 -16.11097 -15.64942 -15.36543 -15.07757 -14.65091 -14.45373 -14.19424 -13.90090 -13.72386 -13.42417 -13.41061 -13.05888 -12.55141 -12.54514 -12.36101 -12.13504 -11.93895 -11.87050 -11.84552 -10.99581 -10.93182 -10.83477 -10.75869 -10.66558 -10.54410 -10.32311 -10.18544 -10.00615 -9.80409 -9.66996 -9.46782 -8.81967 -8.52364 -8.27512 -8.07012 -6.65374 -5.66350 -3.12406 1.76057 2.32989 2.92018 3.39918 3.44501 3.50499 3.51613 3.54394 3.78309 4.27526 4.55988 4.57446 4.72897 4.79660 4.98671 5.04709 5.19143 5.28500 5.35961 5.38641 5.47222 5.56345 5.57998 5.64980 5.69805 5.76728 5.78552 5.84978 5.95752 6.02606 6.06832 6.16733 6.32037 6.36331 6.52822 6.60649 6.66269 6.78808 6.82041 6.96097 7.08785 7.13626 7.26388 7.42349 7.77078 7.88750 7.89426 8.47541 8.65047 9.30500 9.93620 10.43314 11.38750 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017880 B = 0.003424 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.576654 B = 8175.179726 C = 9136.674408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.592 5.592 3 C -0.253 4.253 4 H 0.067 0.933 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.903 3.097 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.279 1.279 11 C 0.169 3.831 12 H 0.063 0.937 13 C -0.131 4.131 14 C -0.132 4.132 15 C 0.101 3.899 16 N -0.598 5.598 17 C 0.588 3.412 18 O -0.551 6.551 19 C -0.211 4.211 20 C -0.168 4.168 21 C -0.017 4.017 22 N -0.554 5.554 23 H 0.412 0.588 24 C 0.124 3.876 25 C -0.092 4.092 26 C -0.168 4.168 27 C -0.180 4.180 28 C 0.099 3.901 29 H 0.028 0.972 30 H 0.041 0.959 31 H 0.000 1.000 32 H 0.251 0.749 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.149 0.851 40 H 0.169 0.831 41 H 0.143 0.857 42 H 0.094 0.906 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.229 -22.692 -4.330 24.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.314 5.314 3 C -0.383 4.383 4 H 0.085 0.915 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.733 3.267 8 H -0.215 1.215 9 H -0.219 1.219 10 H -0.205 1.205 11 C 0.060 3.940 12 H 0.082 0.918 13 C -0.171 4.171 14 C -0.171 4.171 15 C -0.022 4.022 16 N -0.331 5.331 17 C 0.377 3.623 18 O -0.431 6.431 19 C -0.221 4.221 20 C -0.193 4.193 21 C -0.144 4.144 22 N -0.150 5.150 23 H 0.248 0.752 24 C 0.008 3.992 25 C -0.111 4.111 26 C -0.205 4.205 27 C -0.217 4.217 28 C -0.025 4.025 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.018 0.982 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.167 0.833 40 H 0.186 0.814 41 H 0.160 0.840 42 H 0.112 0.888 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.302 -22.227 -4.768 24.562 hybrid contribution 0.455 0.595 0.009 0.749 sum 9.757 -21.632 -4.758 24.203 Atomic orbital electron populations 1.20760 0.82825 0.95758 0.99016 1.43873 1.01707 1.00084 1.85694 1.19235 0.99154 0.85590 1.34319 0.91483 1.24999 0.98222 0.98460 0.97821 1.70069 1.21374 1.27293 1.36347 0.86272 0.78766 0.84257 0.77373 1.21496 1.21855 1.20485 1.20502 0.96400 0.86216 0.90852 0.91830 1.22109 0.99334 0.94789 1.00868 1.21931 1.00936 0.97388 0.96812 1.22039 1.01136 0.94519 0.84517 1.47941 1.49127 1.18529 1.17465 1.17392 0.77639 0.85206 0.82015 1.90732 1.59968 1.58139 1.34212 1.20128 0.96539 0.94085 1.11382 1.22103 1.00523 0.91126 1.05522 1.21696 0.88204 0.99670 1.04878 1.41460 1.17648 1.07820 1.48039 0.75173 1.19192 0.95876 0.83239 1.00937 1.20839 0.86762 1.00725 1.02797 1.23056 0.98420 1.02677 0.96337 1.22980 1.02105 0.98699 0.97944 1.22262 0.96726 0.81598 1.01918 0.95364 0.93997 0.98204 0.93845 0.92589 0.91660 0.91572 0.91985 0.92052 0.88770 0.83348 0.81371 0.83958 0.88797 0.87705 0.87766 0.89465 0.89272 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.01 8.06 59.85 0.48 4.49 16 2 N -0.59 -15.14 2.81 -173.60 -0.49 -15.63 16 3 C -0.25 -7.16 9.55 -15.06 -0.14 -7.31 16 4 H 0.07 1.89 7.84 -52.48 -0.41 1.48 16 5 C 0.00 0.10 5.05 -17.44 -0.09 0.01 16 6 N -0.91 -26.75 10.89 55.49 0.60 -26.15 16 7 Si 0.90 22.43 29.58 -169.99 -5.03 17.40 16 8 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 9 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 C 0.17 3.63 2.73 -68.03 -0.19 3.44 16 12 H 0.06 1.45 7.87 -51.93 -0.41 1.05 16 13 C -0.13 -2.42 5.15 -26.69 -0.14 -2.56 16 14 C -0.13 -1.89 6.08 -26.61 -0.16 -2.05 16 15 C 0.10 1.35 5.43 -3.71 -0.02 1.33 16 16 N -0.60 -10.07 2.98 -174.36 -0.52 -10.59 16 17 C 0.59 10.34 7.50 -12.59 -0.09 10.24 16 18 O -0.55 -11.48 14.99 5.25 0.08 -11.41 16 19 C -0.21 -2.96 5.50 -103.35 -0.57 -3.53 16 20 C -0.17 -1.80 8.62 -37.50 -0.32 -2.13 16 21 C -0.02 -0.14 11.89 -16.83 -0.20 -0.34 16 22 N -0.55 -4.62 5.80 -9.11 -0.05 -4.68 16 23 H 0.41 2.17 7.83 -40.82 -0.32 1.85 16 24 C 0.12 1.48 6.69 -81.88 -0.55 0.93 16 25 C -0.09 -1.05 5.90 -91.77 -0.54 -1.59 16 26 C -0.17 -1.52 10.23 -26.74 -0.27 -1.79 16 27 C -0.18 -1.42 10.13 -26.74 -0.27 -1.69 16 28 C 0.10 1.94 5.78 -3.94 -0.02 1.91 16 29 H 0.03 0.75 7.45 -51.94 -0.39 0.36 16 30 H 0.04 1.12 7.31 -51.93 -0.38 0.74 16 31 H 0.00 -0.01 6.34 -51.93 -0.33 -0.34 16 32 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.06 1.03 7.72 -51.93 -0.40 0.63 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 1.10 4.38 -51.93 -0.23 0.87 16 39 H 0.15 1.38 7.05 -52.49 -0.37 1.01 16 40 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.14 2.00 6.85 -51.93 -0.36 1.65 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.09 0.52 7.08 -51.93 -0.37 0.15 16 46 H 0.09 1.97 6.99 -51.93 -0.36 1.61 16 47 H 0.06 1.19 6.47 -51.93 -0.34 0.85 16 LS Contribution 367.20 15.07 5.53 5.53 Total: -1.00 -33.61 367.20 -10.14 -43.75 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -7.17 Total: 2.40 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -3.10 Total: -0.63 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.46 Total: -57.05 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.08 Total: -11.41 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.03 Total: 17.40 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.61 -10.14 -43.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027547402.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.108 kcal (2) G-P(sol) polarization free energy of solvation -33.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds