Wall clock time and date at job start Tue Mar 31 2020 11:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36942 * 119.99453 * 2 1 4 4 H 1.08004 * 119.99323 * 204.23637 * 3 2 1 5 5 C 1.38807 * 120.00153 * 24.24028 * 3 2 1 6 6 N 1.31613 * 120.00393 * 14.50293 * 5 3 2 7 7 Si 1.86804 * 119.99632 * 194.50239 * 5 3 2 8 8 H 1.48499 * 109.47107 * 90.00016 * 7 5 3 9 9 H 1.48498 * 109.47120 * 209.99856 * 7 5 3 10 10 H 1.48494 * 109.47583 * 330.00207 * 7 5 3 11 11 C 1.46493 * 120.00211 * 179.97438 * 2 1 3 12 12 H 1.09001 * 109.50207 * 179.97438 * 11 2 1 13 13 C 1.53042 * 109.49911 * 300.00297 * 11 2 1 14 14 C 1.53042 * 109.54131 * 181.31802 * 13 11 2 15 15 C 1.53193 * 109.30962 * 298.63295 * 14 13 11 16 16 N 1.46928 * 108.77630 * 54.63414 * 15 14 13 17 17 C 1.34776 * 120.62843 * 126.36545 * 16 15 14 18 18 O 1.21628 * 119.99862 * 184.92811 * 17 16 15 19 19 C 1.47263 * 120.00115 * 4.92975 * 17 16 15 20 20 C 1.46686 * 126.94140 * 34.75011 * 19 17 16 21 21 C 1.34491 * 106.32792 * 179.97438 * 20 19 17 22 22 N 1.36442 * 108.85954 * 359.73876 * 21 20 19 23 23 H 0.96996 * 124.85300 * 180.26373 * 22 21 20 24 24 C 1.34665 * 110.29820 * 0.44242 * 22 21 20 25 25 C 1.50696 * 125.80265 * 179.82421 * 24 22 21 26 26 C 1.52998 * 117.49787 * 299.69326 * 25 24 22 27 27 C 1.52990 * 60.00194 * 107.48998 * 26 25 24 28 28 C 1.46919 * 118.73888 * 306.64463 * 16 15 14 29 29 H 1.08988 * 109.47301 * 272.78233 * 1 2 3 30 30 H 1.09005 * 109.47204 * 32.78781 * 1 2 3 31 31 H 1.09005 * 109.46808 * 152.78120 * 1 2 3 32 32 H 0.97001 * 120.00112 * 179.97438 * 6 5 3 33 33 H 1.09005 * 109.45869 * 61.29125 * 13 11 2 34 34 H 1.08999 * 109.45629 * 301.33854 * 13 11 2 35 35 H 1.08994 * 109.49763 * 178.68156 * 14 13 11 36 36 H 1.08991 * 109.49588 * 58.58187 * 14 13 11 37 37 H 1.08995 * 109.58701 * 294.85082 * 15 14 13 38 38 H 1.08992 * 109.70260 * 174.49105 * 15 14 13 39 39 H 1.07990 * 126.83487 * 359.94450 * 20 19 17 40 40 H 1.08002 * 125.56890 * 180.02562 * 21 20 19 41 41 H 1.08997 * 115.56497 * 154.00544 * 25 24 22 42 42 H 1.09003 * 117.49782 * 359.97438 * 26 25 24 43 43 H 1.09007 * 117.50041 * 214.97872 * 26 25 24 44 44 H 1.08998 * 117.50203 * 107.49126 * 27 26 25 45 45 H 1.09006 * 117.49916 * 252.48994 * 27 26 25 46 46 H 1.09005 * 109.58790 * 173.14566 * 28 16 15 47 47 H 1.09000 * 109.58862 * 293.56863 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1583 1.2272 -0.3840 5 6 1.5473 2.3351 0.4935 6 7 0.4498 2.2452 1.2143 7 14 2.2946 4.0091 0.1346 8 1 1.7204 4.5478 -1.1244 9 1 1.9912 4.9368 1.2537 10 1 3.7662 3.8735 -0.0108 11 6 2.1976 -1.2686 0.0006 12 1 3.2693 -1.0700 0.0000 13 6 1.8283 -2.0712 1.2503 14 6 2.6177 -3.3822 1.2685 15 6 2.2498 -4.2123 0.0347 16 7 2.4655 -3.3946 -1.1669 17 6 3.2367 -3.8465 -2.1756 18 8 3.4808 -3.1257 -3.1244 19 6 3.7838 -5.2129 -2.1290 20 6 3.1374 -6.4026 -1.5646 21 6 3.9982 -7.4206 -1.7419 22 7 5.1130 -6.9508 -2.3729 23 1 5.8805 -7.4910 -2.6176 24 6 4.9971 -5.6292 -2.6037 25 6 6.0264 -4.7582 -3.2766 26 6 7.4045 -4.6570 -2.6197 27 6 7.2311 -5.4526 -3.9149 28 6 1.8295 -2.0725 -1.2452 29 1 -0.3633 0.0499 1.0263 30 1 -0.3634 0.8640 -0.5565 31 1 -0.3633 -0.9139 -0.4701 32 1 0.0291 3.0482 1.5595 33 1 0.7605 -2.2903 1.2387 34 1 2.0698 -1.4895 2.1398 35 1 2.3717 -3.9424 2.1705 36 1 3.6855 -3.1640 1.2550 37 1 1.2023 -4.5078 0.0922 38 1 2.8784 -5.1015 -0.0108 39 1 2.1643 -6.4512 -1.0989 40 1 3.8320 -8.4439 -1.4390 41 1 5.6383 -3.8680 -3.7715 42 1 7.5664 -5.2202 -1.7005 43 1 7.9229 -3.7002 -2.6823 44 1 7.6354 -5.0194 -4.8297 45 1 7.2794 -6.5396 -3.8482 46 1 2.1828 -1.5491 -2.1337 47 1 0.7470 -2.1901 -1.2941 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027547402.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:18 Heat of formation + Delta-G solvation = 45.782620 kcal Electronic energy + Delta-G solvation = -27291.801378 eV Core-core repulsion = 23669.159692 eV Total energy + Delta-G solvation = -3622.641686 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.36672 -40.71326 -38.70839 -37.80765 -36.70215 -33.99017 -32.84919 -32.14229 -30.25846 -30.06369 -28.05096 -26.65783 -25.39210 -23.92104 -23.37759 -23.09844 -22.64499 -21.47081 -20.60684 -19.38299 -18.81428 -18.59868 -17.42057 -16.95911 -16.62878 -16.30904 -16.12927 -15.70836 -15.38329 -15.22423 -15.02852 -14.82829 -14.62780 -14.49477 -14.06052 -13.84931 -13.69421 -13.55998 -13.26081 -12.91100 -12.81321 -12.78250 -12.51544 -12.48278 -12.30202 -12.09007 -11.93860 -11.76838 -11.73980 -11.59288 -11.41466 -11.36648 -10.85403 -10.65809 -9.75315 -9.53973 -8.99287 -8.73680 -7.85261 -5.34206 0.79808 1.43210 1.45410 1.53873 1.57985 1.96992 2.36146 2.42113 2.51669 2.95370 3.27068 3.53113 3.62961 3.78859 3.85386 4.01107 4.03744 4.15889 4.20734 4.26258 4.28597 4.37615 4.38983 4.61032 4.65606 4.65951 4.74835 4.79958 4.89013 4.91476 4.93467 4.98131 5.05320 5.10813 5.12550 5.15800 5.24897 5.25825 5.44915 5.49583 5.59401 5.65095 5.68785 5.81554 6.03047 6.32130 6.58143 6.70288 7.13184 7.32189 7.84401 8.28466 9.17444 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017880 B = 0.003424 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.576654 B = 8175.179726 C = 9136.674408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.609 5.609 3 C -0.270 4.270 4 H 0.058 0.942 5 C -0.045 4.045 6 N -0.931 5.931 7 Si 0.966 3.034 8 H -0.286 1.286 9 H -0.289 1.289 10 H -0.273 1.273 11 C 0.170 3.830 12 H 0.038 0.962 13 C -0.120 4.120 14 C -0.122 4.122 15 C 0.101 3.899 16 N -0.600 5.600 17 C 0.580 3.420 18 O -0.601 6.601 19 C -0.252 4.252 20 C -0.187 4.187 21 C 0.011 3.989 22 N -0.537 5.537 23 H 0.430 0.570 24 C 0.124 3.876 25 C -0.127 4.127 26 C -0.164 4.164 27 C -0.152 4.152 28 C 0.115 3.885 29 H 0.009 0.991 30 H 0.013 0.987 31 H 0.031 0.969 32 H 0.250 0.750 33 H 0.060 0.940 34 H 0.041 0.959 35 H 0.103 0.897 36 H 0.053 0.947 37 H 0.082 0.918 38 H 0.121 0.879 39 H 0.162 0.838 40 H 0.215 0.785 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.110 0.890 45 H 0.116 0.884 46 H 0.054 0.946 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.372 -26.680 -3.772 28.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.331 5.331 3 C -0.400 4.400 4 H 0.076 0.924 5 C -0.240 4.240 6 N -0.577 5.577 7 Si 0.794 3.206 8 H -0.213 1.213 9 H -0.215 1.215 10 H -0.198 1.198 11 C 0.062 3.938 12 H 0.057 0.943 13 C -0.160 4.160 14 C -0.160 4.160 15 C -0.020 4.020 16 N -0.331 5.331 17 C 0.372 3.628 18 O -0.484 6.484 19 C -0.262 4.262 20 C -0.211 4.211 21 C -0.117 4.117 22 N -0.133 5.133 23 H 0.270 0.730 24 C 0.005 3.995 25 C -0.146 4.146 26 C -0.202 4.202 27 C -0.189 4.189 28 C -0.010 4.010 29 H 0.027 0.973 30 H 0.032 0.968 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.121 0.879 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.139 0.861 39 H 0.180 0.820 40 H 0.232 0.768 41 H 0.120 0.880 42 H 0.124 0.876 43 H 0.118 0.882 44 H 0.128 0.872 45 H 0.135 0.865 46 H 0.072 0.928 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.471 -26.285 -4.195 28.603 hybrid contribution 0.162 1.771 -0.223 1.793 sum 10.634 -24.513 -4.417 27.083 Atomic orbital electron populations 1.20494 0.82571 0.95972 0.97581 1.44066 1.02110 1.00912 1.86041 1.19448 0.99113 0.87221 1.34196 0.92430 1.25709 0.98867 1.01597 0.97862 1.70204 1.22458 1.27902 1.37161 0.85293 0.78272 0.80011 0.77032 1.21311 1.21471 1.19774 1.20585 0.94533 0.85435 0.93271 0.94344 1.21921 1.00233 0.96215 0.97636 1.21889 0.99622 0.95441 0.99075 1.22315 1.03050 0.94468 0.82147 1.48008 1.48843 1.17486 1.18795 1.18098 0.76907 0.86590 0.81217 1.90695 1.61636 1.59929 1.36102 1.20015 0.98452 0.93002 1.14731 1.22282 1.01784 0.90303 1.06704 1.22368 0.86525 1.00830 1.01965 1.41452 1.18468 1.06439 1.46986 0.73023 1.19137 0.95300 0.84711 1.00341 1.20660 0.88053 1.00727 1.05192 1.23114 0.96282 1.03116 0.97670 1.23120 0.98200 1.00113 0.97424 1.21776 0.96869 0.83087 0.99283 0.97311 0.96793 0.95072 0.94083 0.92142 0.94040 0.87857 0.92805 0.89956 0.86115 0.82020 0.76797 0.88041 0.87556 0.88228 0.87204 0.86541 0.92771 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.18 8.06 127.77 1.03 10.21 16 2 N -0.61 -32.51 2.81 -703.14 -1.97 -34.48 16 3 C -0.27 -15.90 9.55 84.03 0.80 -15.10 16 4 H 0.06 3.42 7.84 -2.91 -0.02 3.40 16 5 C -0.04 -2.61 5.05 84.86 0.43 -2.18 16 6 N -0.93 -56.55 10.89 21.65 0.24 -56.32 16 7 Si 0.97 47.31 29.58 68.60 2.03 49.34 16 8 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 9 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 10 H -0.27 -12.93 7.11 99.48 0.71 -12.23 16 11 C 0.17 7.57 2.73 44.93 0.12 7.69 16 12 H 0.04 1.87 7.87 -2.39 -0.02 1.85 16 13 C -0.12 -4.45 5.15 30.62 0.16 -4.29 16 14 C -0.12 -3.26 6.08 30.67 0.19 -3.07 16 15 C 0.10 2.50 5.43 86.36 0.47 2.97 16 16 N -0.60 -20.44 2.98 -823.81 -2.45 -22.89 16 17 C 0.58 21.14 7.50 86.62 0.65 21.79 16 18 O -0.60 -27.04 14.99 -4.12 -0.06 -27.11 16 19 C -0.25 -6.84 5.50 -19.04 -0.10 -6.95 16 20 C -0.19 -3.38 8.62 23.62 0.20 -3.18 16 21 C 0.01 0.12 11.89 83.12 0.99 1.11 16 22 N -0.54 -6.82 5.80 -182.72 -1.06 -7.88 16 23 H 0.43 2.41 7.83 -92.71 -0.73 1.69 16 24 C 0.12 2.77 6.69 41.78 0.28 3.04 16 25 C -0.13 -2.91 5.90 -11.54 -0.07 -2.98 16 26 C -0.16 -2.81 10.23 30.59 0.31 -2.50 16 27 C -0.15 -2.07 10.13 30.59 0.31 -1.76 16 28 C 0.11 4.71 5.78 86.22 0.50 5.20 16 29 H 0.01 0.48 7.45 -2.39 -0.02 0.46 16 30 H 0.01 0.75 7.31 -2.38 -0.02 0.74 16 31 H 0.03 1.37 6.34 -2.38 -0.02 1.35 16 32 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 33 H 0.06 2.17 7.72 -2.38 -0.02 2.16 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.12 2.43 4.38 -2.39 -0.01 2.42 16 39 H 0.16 2.38 7.05 -2.92 -0.02 2.36 16 40 H 0.22 0.44 8.06 -2.91 -0.02 0.41 16 41 H 0.10 3.17 6.85 -2.39 -0.02 3.15 16 42 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 44 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.12 0.89 7.08 -2.38 -0.02 0.88 16 46 H 0.05 2.58 6.99 -2.38 -0.02 2.57 16 47 H 0.07 2.61 6.47 -2.39 -0.02 2.59 16 Total: -1.00 -79.61 367.20 3.24 -76.37 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.26 Total: 12.97 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 6.27 Total: 10.00 kcal Atomic # 7 Polarization: -116.32 SS G_CDS: -5.25 Total: -121.57 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.06 Total: -27.11 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -79.61 3.24 -76.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027547402.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.154 kcal (2) G-P(sol) polarization free energy of solvation -79.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds