Wall clock time and date at job start Tue Mar 31 2020 11:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36935 * 120.00192 * 2 1 4 4 H 1.08000 * 120.00180 * 204.28569 * 3 2 1 5 5 C 1.38816 * 119.99976 * 24.27379 * 3 2 1 6 6 N 1.31622 * 119.99694 * 15.80474 * 5 3 2 7 7 Si 1.86800 * 120.00130 * 195.80036 * 5 3 2 8 8 H 1.48497 * 109.46874 * 94.96890 * 7 5 3 9 9 H 1.48501 * 109.47129 * 214.96959 * 7 5 3 10 10 H 1.48505 * 109.47126 * 334.96579 * 7 5 3 11 11 C 1.46504 * 119.99924 * 179.97438 * 2 1 3 12 12 H 1.09006 * 109.49379 * 180.02562 * 11 2 1 13 13 C 1.53039 * 109.49828 * 60.00213 * 11 2 1 14 14 C 1.53036 * 109.53636 * 178.68385 * 13 11 2 15 15 C 1.53181 * 109.31606 * 61.36470 * 14 13 11 16 16 N 1.46928 * 108.77812 * 305.36354 * 15 14 13 17 17 C 1.34774 * 120.63185 * 233.61377 * 16 15 14 18 18 O 1.21627 * 119.99756 * 183.10331 * 17 16 15 19 19 C 1.47260 * 120.00170 * 3.09564 * 17 16 15 20 20 C 1.36765 * 126.94404 * 330.67496 * 19 17 16 21 21 N 1.34655 * 108.40178 * 179.97438 * 20 19 17 22 22 H 0.97000 * 124.85754 * 180.02562 * 21 20 19 23 23 C 1.36456 * 110.29366 * 359.97438 * 21 20 19 24 24 C 1.34483 * 108.85645 * 359.75156 * 23 21 20 25 25 C 1.50699 * 126.83479 * 180.25437 * 24 23 21 26 26 C 1.53001 * 117.49932 * 8.89504 * 25 24 23 27 27 C 1.53001 * 117.49729 * 300.23511 * 25 24 23 28 28 C 1.46932 * 118.73641 * 53.60598 * 16 15 14 29 29 H 1.09001 * 109.46654 * 273.00507 * 1 2 3 30 30 H 1.08997 * 109.46770 * 33.00710 * 1 2 3 31 31 H 1.08996 * 109.47121 * 153.00853 * 1 2 3 32 32 H 0.97003 * 119.99803 * 179.97438 * 6 5 3 33 33 H 1.08996 * 109.45708 * 298.70341 * 13 11 2 34 34 H 1.08999 * 109.46004 * 58.65928 * 13 11 2 35 35 H 1.09000 * 109.49468 * 181.31689 * 14 13 11 36 36 H 1.09002 * 109.49796 * 301.37750 * 14 13 11 37 37 H 1.08995 * 109.59015 * 65.14933 * 15 14 13 38 38 H 1.09000 * 109.58966 * 185.43442 * 15 14 13 39 39 H 1.08002 * 125.80016 * 359.93701 * 20 19 17 40 40 H 1.08000 * 125.56799 * 180.02562 * 23 21 20 41 41 H 1.09000 * 115.54986 * 154.55897 * 25 24 23 42 42 H 1.09000 * 117.49753 * 359.97438 * 26 25 24 43 43 H 1.08994 * 117.50318 * 145.01840 * 26 25 24 44 44 H 1.09007 * 117.49754 * 214.97969 * 27 25 24 45 45 H 1.08993 * 117.49901 * 359.97438 * 27 25 24 46 46 H 1.08998 * 109.58310 * 186.61102 * 28 16 15 47 47 H 1.09000 * 109.58515 * 66.17921 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1581 1.2273 -0.3847 5 6 1.5477 2.3349 0.4942 6 7 0.4650 2.2432 1.2370 7 14 2.2743 4.0113 0.1053 8 1 1.5867 4.5861 -1.0787 9 1 2.0904 4.9130 1.2707 10 1 3.7235 3.8673 -0.1853 11 6 2.1975 -1.2688 0.0006 12 1 3.2693 -1.0700 0.0009 13 6 1.8283 -2.0723 -1.2484 14 6 2.6176 -3.3833 -1.2654 15 6 2.2497 -4.2123 -0.0310 16 7 2.4654 -3.3937 1.1699 17 6 3.2362 -3.8449 2.1792 18 8 3.3614 -3.1826 3.1917 19 6 3.9267 -5.1397 2.0563 20 6 3.5164 -6.2245 1.3315 21 7 4.4270 -7.2051 1.4815 22 1 4.3714 -8.0812 1.0690 23 6 5.4399 -6.7897 2.2961 24 6 5.1971 -5.5242 2.6808 25 6 6.0571 -4.6719 3.5780 26 6 7.4404 -5.2097 3.9496 27 6 6.3229 -5.1830 4.9954 28 6 1.8248 -2.0737 1.2495 29 1 -0.3633 0.0539 1.0263 30 1 -0.3633 0.8618 -0.5598 31 1 -0.3633 -0.9157 -0.4664 32 1 0.0445 3.0461 1.5826 33 1 0.7606 -2.2914 -1.2367 34 1 2.0698 -1.4914 -2.1385 35 1 2.3716 -3.9444 -2.1670 36 1 3.6855 -3.1652 -1.2527 37 1 1.2022 -4.5080 -0.0882 38 1 2.8785 -5.1016 0.0127 39 1 2.6149 -6.2848 0.7398 40 1 6.2987 -7.3793 2.5812 41 1 5.9557 -3.5951 3.4420 42 1 7.7283 -6.1802 3.5455 43 1 8.2489 -4.4869 4.0584 44 1 6.3967 -4.4425 5.7919 45 1 5.8754 -6.1355 5.2791 46 1 2.1751 -1.5507 2.1394 47 1 0.7426 -2.1950 1.2965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027634361.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:23 Heat of formation + Delta-G solvation = 78.880363 kcal Electronic energy + Delta-G solvation = -27249.240823 eV Core-core repulsion = 23628.034363 eV Total energy + Delta-G solvation = -3621.206460 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.46230 -39.31361 -37.19127 -36.93762 -34.98634 -32.33228 -31.28877 -30.86208 -29.63570 -28.17540 -25.93735 -25.37187 -23.57029 -23.24015 -22.39028 -22.13230 -21.35410 -19.96757 -18.89836 -18.58985 -17.69674 -16.68347 -16.28017 -15.46189 -15.15687 -15.04801 -14.63043 -14.42406 -14.25280 -14.05986 -13.79044 -13.54239 -13.42988 -13.03348 -12.62669 -12.34019 -12.28558 -12.10204 -11.80697 -11.62687 -11.54628 -11.02743 -10.94599 -10.80875 -10.76079 -10.48682 -10.35369 -10.31196 -10.25321 -10.07872 -9.80174 -9.66369 -9.40584 -8.60293 -8.49321 -8.27912 -8.11427 -6.67097 -5.67752 -3.13718 1.82306 2.26420 3.03229 3.36308 3.44002 3.49904 3.51774 3.69816 4.06369 4.54762 4.57515 4.78834 4.88863 4.97598 5.01502 5.06650 5.14274 5.23485 5.34236 5.47116 5.50392 5.58884 5.59598 5.62991 5.70381 5.81449 5.87823 5.98591 6.01922 6.10034 6.12522 6.22180 6.32192 6.32894 6.47474 6.57366 6.67165 6.78293 6.80509 6.89433 7.03171 7.12059 7.29027 7.38256 7.74303 7.87386 7.91151 8.46156 8.70758 9.28598 9.91831 10.41730 11.37314 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016291 B = 0.003501 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.301085 B = 7995.888307 C = 9039.038439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.590 5.590 3 C -0.257 4.257 4 H 0.068 0.932 5 C 0.005 3.995 6 N -0.902 5.902 7 Si 0.903 3.097 8 H -0.289 1.289 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.168 3.832 12 H 0.064 0.936 13 C -0.133 4.133 14 C -0.130 4.130 15 C 0.083 3.917 16 N -0.603 5.603 17 C 0.581 3.419 18 O -0.539 6.539 19 C -0.203 4.203 20 C 0.025 3.975 21 N -0.553 5.553 22 H 0.416 0.584 23 C -0.022 4.022 24 C -0.079 4.079 25 C -0.073 4.073 26 C -0.182 4.182 27 C -0.169 4.169 28 C 0.102 3.898 29 H 0.028 0.972 30 H 0.041 0.959 31 H 0.001 0.999 32 H 0.252 0.748 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.098 0.902 39 H 0.185 0.815 40 H 0.166 0.834 41 H 0.116 0.884 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.868 -23.065 -1.910 24.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.312 5.312 3 C -0.387 4.387 4 H 0.085 0.915 5 C -0.194 4.194 6 N -0.547 5.547 7 Si 0.733 3.267 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.204 1.204 11 C 0.059 3.941 12 H 0.082 0.918 13 C -0.172 4.172 14 C -0.169 4.169 15 C -0.040 4.040 16 N -0.337 5.337 17 C 0.370 3.630 18 O -0.416 6.416 19 C -0.214 4.214 20 C -0.109 4.109 21 N -0.147 5.147 22 H 0.252 0.748 23 C -0.150 4.150 24 C -0.086 4.086 25 C -0.091 4.091 26 C -0.219 4.219 27 C -0.206 4.206 28 C -0.022 4.022 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.019 0.981 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.201 0.799 40 H 0.183 0.817 41 H 0.134 0.866 42 H 0.108 0.892 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.818 -22.649 -1.329 23.997 hybrid contribution 0.110 0.572 -0.428 0.722 sum 7.928 -22.077 -1.756 23.523 Atomic orbital electron populations 1.20762 0.82853 0.95799 0.99100 1.43929 1.01706 1.00096 1.85445 1.19220 0.99326 0.85447 1.34669 0.91455 1.25033 0.98334 0.98548 0.97487 1.70081 1.22174 1.27403 1.35009 0.86255 0.78707 0.84337 0.77377 1.21587 1.21781 1.20402 1.20645 0.96459 0.86176 0.90798 0.91779 1.22073 0.99535 0.95073 1.00543 1.21888 1.01063 0.97248 0.96684 1.22367 1.01167 0.95141 0.85276 1.48099 1.49310 1.18991 1.17281 1.17462 0.78163 0.84496 0.82872 1.90775 1.63057 1.58548 1.29249 1.20418 0.99102 0.95228 1.06623 1.22368 0.96720 0.88819 1.02991 1.41478 1.18928 1.14526 1.39775 0.74767 1.21412 0.95653 0.96726 1.01243 1.19604 0.94898 0.93214 1.00840 1.20278 0.94871 0.98976 0.95020 1.23007 0.92097 1.02541 1.04299 1.22964 1.02313 1.02847 0.92459 1.22482 0.96514 0.80963 1.02243 0.95350 0.94072 0.98056 0.93760 0.92380 0.91877 0.91591 0.91765 0.91846 0.88443 0.79857 0.81721 0.86605 0.89166 0.88693 0.88656 0.89058 0.89043 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.93 7.95 59.85 0.48 4.40 16 2 N -0.59 -14.98 2.81 -173.34 -0.49 -15.47 16 3 C -0.26 -7.23 9.55 -15.06 -0.14 -7.38 16 4 H 0.07 1.87 7.85 -52.49 -0.41 1.46 16 5 C 0.00 0.14 5.02 -17.43 -0.09 0.05 16 6 N -0.90 -26.88 10.97 55.49 0.61 -26.27 16 7 Si 0.90 22.37 29.58 -169.99 -5.03 17.35 16 8 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 9 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 11 C 0.17 3.56 2.74 -67.81 -0.19 3.37 16 12 H 0.06 1.45 7.87 -51.93 -0.41 1.04 16 13 C -0.13 -2.24 5.13 -26.69 -0.14 -2.38 16 14 C -0.13 -1.68 6.08 -26.62 -0.16 -1.84 16 15 C 0.08 1.02 5.57 -3.72 -0.02 1.00 16 16 N -0.60 -10.17 2.97 -174.10 -0.52 -10.69 16 17 C 0.58 10.55 7.63 -12.59 -0.10 10.45 16 18 O -0.54 -12.03 15.78 5.25 0.08 -11.94 16 19 C -0.20 -2.88 5.89 -103.35 -0.61 -3.49 16 20 C 0.03 0.24 9.66 -16.85 -0.16 0.08 16 21 N -0.55 -4.05 5.90 -12.85 -0.08 -4.12 16 22 H 0.42 1.42 8.96 -40.82 -0.37 1.05 16 23 C -0.02 -0.21 11.26 -16.82 -0.19 -0.40 16 24 C -0.08 -1.03 6.01 -102.54 -0.62 -1.64 16 25 C -0.07 -0.97 5.83 -91.77 -0.54 -1.50 16 26 C -0.18 -1.80 10.03 -26.69 -0.27 -2.07 16 27 C -0.17 -1.89 10.24 -26.69 -0.27 -2.16 16 28 C 0.10 2.08 5.78 -3.71 -0.02 2.06 16 29 H 0.03 0.76 7.44 -51.93 -0.39 0.37 16 30 H 0.04 1.08 7.36 -51.93 -0.38 0.70 16 31 H 0.00 0.02 6.46 -51.93 -0.34 -0.31 16 32 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.06 0.97 6.71 -51.93 -0.35 0.62 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.10 0.95 3.27 -51.93 -0.17 0.78 16 39 H 0.18 1.29 5.85 -52.49 -0.31 0.99 16 40 H 0.17 1.05 7.16 -52.49 -0.38 0.68 16 41 H 0.12 1.85 7.85 -51.93 -0.41 1.45 16 42 H 0.09 0.72 7.00 -51.93 -0.36 0.36 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.09 2.22 7.02 -51.93 -0.36 1.86 16 47 H 0.06 1.20 7.51 -51.93 -0.39 0.81 16 LS Contribution 367.32 15.07 5.54 5.54 Total: -1.00 -34.90 367.32 -10.03 -44.92 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -7.11 Total: 2.14 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -3.03 Total: -1.44 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -0.47 Total: -56.55 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.08 Total: -11.94 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.35 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.90 -10.03 -44.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027634361.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.803 kcal (2) G-P(sol) polarization free energy of solvation -34.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds