Wall clock time and date at job start Tue Mar 31 2020 11:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36935 * 120.00192 * 2 1 4 4 H 1.08000 * 120.00180 * 204.28569 * 3 2 1 5 5 C 1.38816 * 119.99976 * 24.27379 * 3 2 1 6 6 N 1.31622 * 119.99694 * 15.80474 * 5 3 2 7 7 Si 1.86800 * 120.00130 * 195.80036 * 5 3 2 8 8 H 1.48497 * 109.46874 * 94.96890 * 7 5 3 9 9 H 1.48501 * 109.47129 * 214.96959 * 7 5 3 10 10 H 1.48505 * 109.47126 * 334.96579 * 7 5 3 11 11 C 1.46504 * 119.99924 * 179.97438 * 2 1 3 12 12 H 1.09006 * 109.49379 * 180.02562 * 11 2 1 13 13 C 1.53039 * 109.49828 * 60.00213 * 11 2 1 14 14 C 1.53036 * 109.53636 * 178.68385 * 13 11 2 15 15 C 1.53181 * 109.31606 * 61.36470 * 14 13 11 16 16 N 1.46928 * 108.77812 * 305.36354 * 15 14 13 17 17 C 1.34774 * 120.63185 * 233.61377 * 16 15 14 18 18 O 1.21627 * 119.99756 * 183.10331 * 17 16 15 19 19 C 1.47260 * 120.00170 * 3.09564 * 17 16 15 20 20 C 1.36765 * 126.94404 * 330.67496 * 19 17 16 21 21 N 1.34655 * 108.40178 * 179.97438 * 20 19 17 22 22 H 0.97000 * 124.85754 * 180.02562 * 21 20 19 23 23 C 1.36456 * 110.29366 * 359.97438 * 21 20 19 24 24 C 1.34483 * 108.85645 * 359.75156 * 23 21 20 25 25 C 1.50699 * 126.83479 * 180.25437 * 24 23 21 26 26 C 1.53001 * 117.49932 * 8.89504 * 25 24 23 27 27 C 1.53001 * 117.49729 * 300.23511 * 25 24 23 28 28 C 1.46932 * 118.73641 * 53.60598 * 16 15 14 29 29 H 1.09001 * 109.46654 * 273.00507 * 1 2 3 30 30 H 1.08997 * 109.46770 * 33.00710 * 1 2 3 31 31 H 1.08996 * 109.47121 * 153.00853 * 1 2 3 32 32 H 0.97003 * 119.99803 * 179.97438 * 6 5 3 33 33 H 1.08996 * 109.45708 * 298.70341 * 13 11 2 34 34 H 1.08999 * 109.46004 * 58.65928 * 13 11 2 35 35 H 1.09000 * 109.49468 * 181.31689 * 14 13 11 36 36 H 1.09002 * 109.49796 * 301.37750 * 14 13 11 37 37 H 1.08995 * 109.59015 * 65.14933 * 15 14 13 38 38 H 1.09000 * 109.58966 * 185.43442 * 15 14 13 39 39 H 1.08002 * 125.80016 * 359.93701 * 20 19 17 40 40 H 1.08000 * 125.56799 * 180.02562 * 23 21 20 41 41 H 1.09000 * 115.54986 * 154.55897 * 25 24 23 42 42 H 1.09000 * 117.49753 * 359.97438 * 26 25 24 43 43 H 1.08994 * 117.50318 * 145.01840 * 26 25 24 44 44 H 1.09007 * 117.49754 * 214.97969 * 27 25 24 45 45 H 1.08993 * 117.49901 * 359.97438 * 27 25 24 46 46 H 1.08998 * 109.58310 * 186.61102 * 28 16 15 47 47 H 1.09000 * 109.58515 * 66.17921 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1581 1.2273 -0.3847 5 6 1.5477 2.3349 0.4942 6 7 0.4650 2.2432 1.2370 7 14 2.2743 4.0113 0.1053 8 1 1.5867 4.5861 -1.0787 9 1 2.0904 4.9130 1.2707 10 1 3.7235 3.8673 -0.1853 11 6 2.1975 -1.2688 0.0006 12 1 3.2693 -1.0700 0.0009 13 6 1.8283 -2.0723 -1.2484 14 6 2.6176 -3.3833 -1.2654 15 6 2.2497 -4.2123 -0.0310 16 7 2.4654 -3.3937 1.1699 17 6 3.2362 -3.8449 2.1792 18 8 3.3614 -3.1826 3.1917 19 6 3.9267 -5.1397 2.0563 20 6 3.5164 -6.2245 1.3315 21 7 4.4270 -7.2051 1.4815 22 1 4.3714 -8.0812 1.0690 23 6 5.4399 -6.7897 2.2961 24 6 5.1971 -5.5242 2.6808 25 6 6.0571 -4.6719 3.5780 26 6 7.4404 -5.2097 3.9496 27 6 6.3229 -5.1830 4.9954 28 6 1.8248 -2.0737 1.2495 29 1 -0.3633 0.0539 1.0263 30 1 -0.3633 0.8618 -0.5598 31 1 -0.3633 -0.9157 -0.4664 32 1 0.0445 3.0461 1.5826 33 1 0.7606 -2.2914 -1.2367 34 1 2.0698 -1.4914 -2.1385 35 1 2.3716 -3.9444 -2.1670 36 1 3.6855 -3.1652 -1.2527 37 1 1.2022 -4.5080 -0.0882 38 1 2.8785 -5.1016 0.0127 39 1 2.6149 -6.2848 0.7398 40 1 6.2987 -7.3793 2.5812 41 1 5.9557 -3.5951 3.4420 42 1 7.7283 -6.1802 3.5455 43 1 8.2489 -4.4869 4.0584 44 1 6.3967 -4.4425 5.7919 45 1 5.8754 -6.1355 5.2791 46 1 2.1751 -1.5507 2.1394 47 1 0.7426 -2.1950 1.2965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027634361.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:22 Heat of formation + Delta-G solvation = 55.992043 kcal Electronic energy + Delta-G solvation = -27250.233335 eV Core-core repulsion = 23628.034363 eV Total energy + Delta-G solvation = -3622.198972 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.32414 -40.64775 -38.69974 -37.88858 -36.72431 -34.03392 -32.79787 -31.98692 -30.83627 -29.47064 -28.04789 -26.68317 -25.30781 -24.11964 -23.40674 -23.16399 -22.79948 -21.01344 -20.38519 -19.47380 -18.96242 -18.55489 -17.53844 -16.98257 -16.56532 -16.32938 -15.97946 -15.67549 -15.40020 -15.27791 -15.07200 -14.89284 -14.64530 -14.42421 -14.35493 -13.86628 -13.70328 -13.40663 -13.15405 -12.93242 -12.80255 -12.56620 -12.47487 -12.35319 -12.21888 -12.11347 -12.06120 -11.72349 -11.69727 -11.46418 -11.38384 -11.22139 -10.81329 -10.65235 -9.71743 -9.36874 -9.05361 -8.75281 -7.86646 -5.35734 0.86548 1.42883 1.43901 1.44550 1.53825 2.00100 2.39802 2.48404 2.55117 3.16062 3.26008 3.61962 3.76201 3.80946 4.00814 4.05142 4.11617 4.15741 4.21954 4.27249 4.29992 4.31406 4.38403 4.61214 4.62906 4.72151 4.78895 4.80403 4.83113 4.90249 4.96367 5.00544 5.07528 5.15772 5.18632 5.22484 5.28440 5.36483 5.43043 5.54651 5.57626 5.63797 5.66785 5.76798 5.98699 6.30985 6.61522 6.76251 7.11960 7.35839 7.83896 8.27645 9.16236 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016291 B = 0.003501 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.301085 B = 7995.888307 C = 9039.038439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.607 5.607 3 C -0.270 4.270 4 H 0.063 0.937 5 C -0.049 4.049 6 N -0.935 5.935 7 Si 0.969 3.031 8 H -0.280 1.280 9 H -0.295 1.295 10 H -0.271 1.271 11 C 0.167 3.833 12 H 0.037 0.963 13 C -0.121 4.121 14 C -0.121 4.121 15 C 0.079 3.921 16 N -0.603 5.603 17 C 0.572 3.428 18 O -0.603 6.603 19 C -0.256 4.256 20 C 0.057 3.943 21 N -0.527 5.527 22 H 0.442 0.558 23 C 0.003 3.997 24 C -0.117 4.117 25 C -0.105 4.105 26 C -0.152 4.152 27 C -0.173 4.173 28 C 0.118 3.882 29 H -0.003 1.003 30 H 0.017 0.983 31 H 0.040 0.960 32 H 0.249 0.751 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.112 0.888 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.131 0.869 39 H 0.219 0.781 40 H 0.202 0.798 41 H 0.066 0.934 42 H 0.122 0.878 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.104 0.896 46 H 0.036 0.964 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.834 -27.639 -4.489 29.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.330 5.330 3 C -0.401 4.401 4 H 0.081 0.919 5 C -0.245 4.245 6 N -0.580 5.580 7 Si 0.797 3.203 8 H -0.207 1.207 9 H -0.222 1.222 10 H -0.195 1.195 11 C 0.060 3.940 12 H 0.055 0.945 13 C -0.160 4.160 14 C -0.160 4.160 15 C -0.042 4.042 16 N -0.335 5.335 17 C 0.364 3.636 18 O -0.486 6.486 19 C -0.266 4.266 20 C -0.080 4.080 21 N -0.122 5.122 22 H 0.283 0.717 23 C -0.126 4.126 24 C -0.123 4.123 25 C -0.124 4.124 26 C -0.188 4.188 27 C -0.210 4.210 28 C -0.008 4.008 29 H 0.015 0.985 30 H 0.036 0.964 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.131 0.869 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.148 0.852 39 H 0.235 0.765 40 H 0.219 0.781 41 H 0.084 0.916 42 H 0.140 0.860 43 H 0.116 0.884 44 H 0.103 0.897 45 H 0.122 0.878 46 H 0.055 0.945 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.806 -27.316 -3.972 28.974 hybrid contribution -0.141 1.916 0.403 1.963 sum 8.665 -25.400 -3.569 27.074 Atomic orbital electron populations 1.20492 0.82559 0.96560 0.97151 1.44168 1.02161 1.00950 1.85686 1.19518 0.99398 0.86994 1.34142 0.91881 1.25820 0.99032 1.02023 0.97621 1.70245 1.23588 1.27946 1.36264 0.85229 0.78340 0.79764 0.77006 1.20658 1.22153 1.19543 1.20784 0.94505 0.85386 0.93361 0.94500 1.21910 1.00707 0.96372 0.97053 1.21881 0.99725 0.95410 0.98971 1.22797 1.03599 0.95248 0.82550 1.48137 1.48715 1.17772 1.18906 1.18245 0.77606 0.85749 0.82011 1.90727 1.65109 1.60841 1.31874 1.20223 1.00771 0.94760 1.10866 1.22600 0.97149 0.87439 1.00773 1.41486 1.17412 1.15045 1.38288 0.71676 1.21768 0.96225 0.95140 0.99460 1.19757 0.95139 0.95075 1.02318 1.20128 0.98298 0.96887 0.97053 1.23114 0.90420 1.03583 1.01723 1.23015 1.03429 1.02939 0.91617 1.21913 0.96316 0.83012 0.99519 0.98504 0.96434 0.94132 0.94173 0.91455 0.92520 0.86929 0.92749 0.89164 0.85151 0.76536 0.78120 0.91607 0.85989 0.88442 0.89741 0.87787 0.94550 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.03 7.95 127.77 1.02 10.04 16 2 N -0.61 -32.20 2.81 -702.33 -1.97 -34.17 16 3 C -0.27 -15.90 9.55 84.03 0.80 -15.09 16 4 H 0.06 3.67 7.85 -2.91 -0.02 3.65 16 5 C -0.05 -2.92 5.02 84.86 0.43 -2.49 16 6 N -0.93 -58.30 10.97 21.65 0.24 -58.07 16 7 Si 0.97 47.54 29.58 68.60 2.03 49.57 16 8 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 9 H -0.29 -14.54 7.11 99.48 0.71 -13.84 16 10 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 11 C 0.17 7.36 2.74 45.07 0.12 7.48 16 12 H 0.04 1.78 7.87 -2.38 -0.02 1.76 16 13 C -0.12 -3.91 5.13 30.62 0.16 -3.75 16 14 C -0.12 -2.72 6.08 30.67 0.19 -2.53 16 15 C 0.08 1.66 5.57 86.36 0.48 2.14 16 16 N -0.60 -20.67 2.97 -822.98 -2.45 -23.12 16 17 C 0.57 21.88 7.63 86.62 0.66 22.54 16 18 O -0.60 -29.90 15.78 -4.12 -0.06 -29.97 16 19 C -0.26 -7.05 5.89 -19.04 -0.11 -7.16 16 20 C 0.06 0.86 9.66 83.91 0.81 1.67 16 21 N -0.53 -4.79 5.90 -194.56 -1.15 -5.94 16 22 H 0.44 -0.01 8.96 -92.71 -0.83 -0.84 16 23 C 0.00 0.04 11.26 83.11 0.94 0.98 16 24 C -0.12 -2.93 6.01 -18.52 -0.11 -3.04 16 25 C -0.10 -2.93 5.83 -11.54 -0.07 -2.99 16 26 C -0.15 -2.80 10.03 30.62 0.31 -2.50 16 27 C -0.17 -3.94 10.24 30.62 0.31 -3.62 16 28 C 0.12 5.12 5.78 86.36 0.50 5.62 16 29 H 0.00 -0.19 7.44 -2.39 -0.02 -0.21 16 30 H 0.02 0.94 7.36 -2.39 -0.02 0.92 16 31 H 0.04 1.70 6.46 -2.39 -0.02 1.69 16 32 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 33 H 0.07 2.06 6.71 -2.39 -0.02 2.04 16 34 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.13 1.90 3.27 -2.39 -0.01 1.89 16 39 H 0.22 1.70 5.85 -2.91 -0.02 1.68 16 40 H 0.20 1.34 7.16 -2.91 -0.02 1.32 16 41 H 0.07 2.43 7.85 -2.39 -0.02 2.41 16 42 H 0.12 1.46 7.00 -2.39 -0.02 1.44 16 43 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 45 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.04 1.96 7.02 -2.39 -0.02 1.94 16 47 H 0.06 2.50 7.51 -2.39 -0.02 2.49 16 Total: -1.00 -87.57 367.32 3.22 -84.35 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.16 Total: 10.06 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 6.43 Total: 7.29 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -5.33 Total: -121.29 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.06 Total: -29.97 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.57 kcal Total: -87.57 3.22 -84.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027634361.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.338 kcal (2) G-P(sol) polarization free energy of solvation -87.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds