Wall clock time and date at job start Tue Mar 31 2020 11:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36943 * 120.00126 * 2 1 4 4 H 1.08000 * 119.99700 * 164.13064 * 3 2 1 5 5 C 1.38813 * 119.99896 * 344.12798 * 3 2 1 6 6 N 1.31620 * 119.99850 * 343.93046 * 5 3 2 7 7 Si 1.86799 * 119.99713 * 163.93266 * 5 3 2 8 8 H 1.48503 * 109.47265 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47171 * 120.00064 * 7 5 3 10 10 H 1.48502 * 109.46730 * 239.99658 * 7 5 3 11 11 C 1.46497 * 119.99720 * 180.27410 * 2 1 3 12 12 H 1.09005 * 109.49898 * 179.66012 * 11 2 1 13 13 C 1.53045 * 109.49859 * 299.72448 * 11 2 1 14 14 C 1.53040 * 109.53749 * 181.31846 * 13 11 2 15 15 C 1.53191 * 109.31158 * 298.63660 * 14 13 11 16 16 N 1.46919 * 108.77732 * 54.63587 * 15 14 13 17 17 C 1.34778 * 120.63098 * 126.37061 * 16 15 14 18 18 O 1.21628 * 120.00025 * 177.09216 * 17 16 15 19 19 C 1.47261 * 120.00181 * 357.09292 * 17 16 15 20 20 C 1.36766 * 126.93938 * 29.24931 * 19 17 16 21 21 N 1.34659 * 108.39531 * 179.83820 * 20 19 17 22 22 H 0.97001 * 124.85265 * 180.19218 * 21 20 19 23 23 C 1.36445 * 110.29711 * 0.44620 * 21 20 19 24 24 C 1.34486 * 108.85814 * 359.72791 * 23 21 20 25 25 C 1.50698 * 126.83622 * 180.02562 * 24 23 21 26 26 C 1.52999 * 117.49577 * 8.57287 * 25 24 23 27 27 C 1.52993 * 60.00383 * 252.51503 * 26 25 24 28 28 C 1.46928 * 118.74014 * 306.38677 * 16 15 14 29 29 H 1.09005 * 109.46972 * 84.05827 * 1 2 3 30 30 H 1.08999 * 109.47361 * 204.06327 * 1 2 3 31 31 H 1.09003 * 109.47116 * 324.06412 * 1 2 3 32 32 H 0.97001 * 119.99610 * 179.97438 * 6 5 3 33 33 H 1.08997 * 109.45884 * 301.33922 * 13 11 2 34 34 H 1.08997 * 109.45785 * 61.29387 * 13 11 2 35 35 H 1.08998 * 109.49806 * 58.58790 * 14 13 11 36 36 H 1.08993 * 109.49996 * 178.68389 * 14 13 11 37 37 H 1.08998 * 109.58777 * 174.42693 * 15 14 13 38 38 H 1.09002 * 109.58406 * 294.70477 * 15 14 13 39 39 H 1.08004 * 125.80772 * 359.97438 * 20 19 17 40 40 H 1.08001 * 125.57225 * 179.74659 * 23 21 20 41 41 H 1.08990 * 115.55075 * 154.28745 * 25 24 23 42 42 H 1.08998 * 117.50473 * 0.02562 * 26 25 24 43 43 H 1.09005 * 117.49590 * 145.02195 * 26 25 24 44 44 H 1.09001 * 117.50147 * 252.51943 * 27 26 25 45 45 H 1.08994 * 117.50137 * 107.48906 * 27 26 25 46 46 H 1.08997 * 109.59266 * 293.82647 * 28 16 15 47 47 H 1.08997 * 109.58703 * 173.39277 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1989 1.2037 0.2558 5 6 1.4954 2.3652 -0.3288 6 7 0.3294 2.3230 -0.9379 7 14 2.2697 4.0119 0.0933 8 1 3.5718 3.7874 0.7712 9 1 2.4874 4.7904 -1.1525 10 1 1.3652 4.7670 0.9971 11 6 2.1974 -1.2687 -0.0061 12 1 3.2692 -1.0701 -0.0112 13 6 1.8333 -2.0748 1.2429 14 6 2.6227 -3.3858 1.2541 15 6 2.2497 -4.2123 0.0195 16 7 2.4604 -3.3914 -1.1806 17 6 3.2273 -3.8404 -2.1938 18 8 3.3513 -3.1745 -3.2040 19 6 3.9152 -5.1373 -2.0778 20 6 3.5052 -6.2235 -1.3549 21 7 4.4108 -7.2071 -1.5151 22 1 4.3527 -8.0857 -1.1082 23 6 5.4247 -6.7894 -2.3270 24 6 5.1819 -5.5230 -2.7091 25 6 6.0399 -4.6702 -3.6077 26 6 7.2160 -5.3485 -4.3131 27 6 7.4727 -4.3846 -3.1531 28 6 1.8195 -2.0713 -1.2550 29 1 -0.3633 0.1064 -1.0222 30 1 -0.3634 -0.9383 0.4190 31 1 -0.3633 0.8321 0.6031 32 1 -0.1280 3.1470 -1.1673 33 1 2.0786 -1.4956 2.1331 34 1 0.7656 -2.2937 1.2353 35 1 3.6905 -3.1677 1.2369 36 1 2.3805 -3.9486 2.1555 37 1 2.8799 -5.1003 -0.0299 38 1 1.2030 -4.5102 0.0818 39 1 2.6066 -6.2830 -0.7587 40 1 6.2819 -7.3794 -2.6158 41 1 5.5163 -3.8810 -4.1471 42 1 7.3689 -6.4117 -4.1277 43 1 7.4662 -5.0057 -5.3171 44 1 7.8917 -3.4075 -3.3938 45 1 7.7945 -4.8135 -2.2041 46 1 0.7371 -2.1925 -1.2978 47 1 2.1661 -1.5466 -2.1452 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027634363.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:27 Heat of formation + Delta-G solvation = 81.337973 kcal Electronic energy + Delta-G solvation = -27269.217311 eV Core-core repulsion = 23648.117422 eV Total energy + Delta-G solvation = -3621.099890 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.47558 -39.33540 -37.21630 -36.95645 -35.02039 -32.35491 -31.30678 -30.86263 -29.62738 -28.15406 -25.96681 -25.38982 -23.56267 -23.23975 -22.40500 -22.14810 -21.35739 -19.97867 -18.90729 -18.59979 -17.71145 -16.70548 -16.28921 -15.44085 -15.18871 -15.09088 -14.65750 -14.46042 -14.30929 -14.02623 -13.77447 -13.50928 -13.44167 -13.04302 -12.62140 -12.36635 -12.27573 -12.12845 -11.79599 -11.64685 -11.56438 -11.03344 -10.93666 -10.82267 -10.76035 -10.46895 -10.33443 -10.32535 -10.24772 -10.07912 -9.75188 -9.69313 -9.41848 -8.61548 -8.49653 -8.29232 -8.12891 -6.76066 -5.66085 -3.06094 1.80874 2.24727 3.02164 3.35283 3.44010 3.50755 3.53138 3.68505 4.03608 4.54813 4.56582 4.77455 4.87649 4.96618 5.00683 5.05796 5.11936 5.22525 5.34093 5.46548 5.50921 5.57546 5.58851 5.62257 5.69679 5.79993 5.86360 5.97311 6.00602 6.08183 6.10616 6.20889 6.30834 6.34978 6.46283 6.55802 6.66809 6.78035 6.79779 6.88095 7.01870 7.09502 7.28059 7.48474 7.77130 7.88501 7.89446 8.42808 8.68150 9.29623 9.93604 10.39592 11.39125 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016487 B = 0.003499 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.901164 B = 8000.717304 C = 8986.688426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.594 5.594 3 C -0.251 4.251 4 H 0.071 0.929 5 C -0.001 4.001 6 N -0.908 5.908 7 Si 0.904 3.096 8 H -0.279 1.279 9 H -0.291 1.291 10 H -0.290 1.290 11 C 0.169 3.831 12 H 0.064 0.936 13 C -0.133 4.133 14 C -0.130 4.130 15 C 0.083 3.917 16 N -0.603 5.603 17 C 0.583 3.417 18 O -0.542 6.542 19 C -0.204 4.204 20 C 0.026 3.974 21 N -0.553 5.553 22 H 0.416 0.584 23 C -0.022 4.022 24 C -0.078 4.078 25 C -0.079 4.079 26 C -0.180 4.180 27 C -0.173 4.173 28 C 0.100 3.900 29 H 0.027 0.973 30 H -0.002 1.002 31 H 0.047 0.953 32 H 0.251 0.749 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.064 0.936 39 H 0.185 0.815 40 H 0.166 0.834 41 H 0.124 0.876 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.059 0.941 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.388 -23.185 1.677 24.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.316 5.316 3 C -0.380 4.380 4 H 0.089 0.911 5 C -0.199 4.199 6 N -0.554 5.554 7 Si 0.734 3.266 8 H -0.204 1.204 9 H -0.218 1.218 10 H -0.217 1.217 11 C 0.060 3.940 12 H 0.082 0.918 13 C -0.172 4.172 14 C -0.169 4.169 15 C -0.040 4.040 16 N -0.336 5.336 17 C 0.372 3.628 18 O -0.420 6.420 19 C -0.214 4.214 20 C -0.108 4.108 21 N -0.147 5.147 22 H 0.252 0.748 23 C -0.150 4.150 24 C -0.085 4.085 25 C -0.098 4.098 26 C -0.217 4.217 27 C -0.210 4.210 28 C -0.023 4.023 29 H 0.045 0.955 30 H 0.017 0.983 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.115 0.885 38 H 0.082 0.918 39 H 0.201 0.799 40 H 0.183 0.817 41 H 0.142 0.858 42 H 0.108 0.892 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.110 0.890 46 H 0.078 0.922 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.333 -22.763 1.133 24.267 hybrid contribution 0.159 0.544 0.455 0.727 sum 8.492 -22.219 1.588 23.840 Atomic orbital electron populations 1.20812 0.82406 0.95423 0.99505 1.44032 1.01991 1.00094 1.85454 1.19322 0.94769 0.84164 1.39746 0.91088 1.24883 0.97550 0.98079 0.99366 1.70135 1.16499 1.25994 1.42757 0.86189 0.78443 0.84284 0.77696 1.20399 1.21813 1.21708 1.20603 0.96394 0.86101 0.90908 0.91791 1.22083 0.99557 0.95030 1.00552 1.21891 1.01050 0.97266 0.96680 1.22372 1.01212 0.95097 0.85274 1.48078 1.49455 1.18910 1.17157 1.17451 0.78019 0.84497 0.82805 1.90752 1.63132 1.58472 1.29598 1.20398 0.99312 0.95136 1.06591 1.22373 0.96854 0.88682 1.02936 1.41477 1.19072 1.14234 1.39918 0.74757 1.21419 0.95680 0.96700 1.01237 1.19604 0.94991 0.93238 1.00674 1.20428 0.88364 1.00861 1.00133 1.22960 1.03232 0.98153 0.97323 1.22997 0.98721 1.00702 0.98622 1.22491 0.96555 0.81065 1.02203 0.95482 0.98335 0.93401 0.93878 0.91819 0.92350 0.91770 0.91561 0.88453 0.91793 0.79851 0.81722 0.85845 0.89181 0.88692 0.88628 0.89014 0.92247 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.04 7.89 59.85 0.47 4.52 16 2 N -0.59 -15.08 2.82 -173.34 -0.49 -15.57 16 3 C -0.25 -7.05 9.67 -15.06 -0.15 -7.20 16 4 H 0.07 1.97 7.78 -52.49 -0.41 1.56 16 5 C 0.00 -0.03 5.07 -17.43 -0.09 -0.12 16 6 N -0.91 -26.98 10.47 55.49 0.58 -26.40 16 7 Si 0.90 22.42 29.58 -169.99 -5.03 17.39 16 8 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 9 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 11 C 0.17 3.56 2.74 -67.81 -0.19 3.37 16 12 H 0.06 1.44 7.82 -51.93 -0.41 1.03 16 13 C -0.13 -2.24 5.14 -26.69 -0.14 -2.37 16 14 C -0.13 -1.68 6.08 -26.61 -0.16 -1.84 16 15 C 0.08 1.01 5.56 -3.71 -0.02 0.99 16 16 N -0.60 -10.06 2.97 -174.10 -0.52 -10.58 16 17 C 0.58 10.47 7.63 -12.59 -0.10 10.38 16 18 O -0.54 -11.92 15.30 5.25 0.08 -11.84 16 19 C -0.20 -2.87 5.89 -103.35 -0.61 -3.47 16 20 C 0.03 0.25 9.65 -16.84 -0.16 0.08 16 21 N -0.55 -4.00 5.90 -12.85 -0.08 -4.08 16 22 H 0.42 1.39 8.96 -40.82 -0.37 1.02 16 23 C -0.02 -0.21 11.26 -16.83 -0.19 -0.39 16 24 C -0.08 -1.01 6.01 -102.54 -0.62 -1.63 16 25 C -0.08 -1.04 6.05 -91.77 -0.55 -1.60 16 26 C -0.18 -1.76 10.02 -26.73 -0.27 -2.03 16 27 C -0.17 -1.90 10.23 -26.73 -0.27 -2.18 16 28 C 0.10 2.03 5.78 -3.71 -0.02 2.01 16 29 H 0.03 0.73 7.47 -51.93 -0.39 0.34 16 30 H 0.00 -0.04 6.48 -51.93 -0.34 -0.38 16 31 H 0.05 1.28 6.99 -51.93 -0.36 0.92 16 32 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 0.98 6.73 -51.93 -0.35 0.63 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 0.94 3.28 -51.93 -0.17 0.77 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.18 1.27 5.86 -52.48 -0.31 0.97 16 40 H 0.17 1.04 7.16 -52.49 -0.38 0.67 16 41 H 0.12 1.99 7.15 -51.93 -0.37 1.61 16 42 H 0.09 0.72 7.00 -51.93 -0.36 0.35 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.06 1.20 7.50 -51.93 -0.39 0.81 16 47 H 0.09 2.17 7.02 -51.93 -0.36 1.80 16 LS Contribution 365.54 15.07 5.51 5.51 Total: -1.00 -34.77 365.54 -10.05 -44.82 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -7.05 Total: 2.23 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -3.06 Total: -1.48 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -0.50 Total: -56.62 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.08 Total: -11.84 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.03 Total: 17.39 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.77 -10.05 -44.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027634363.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.159 kcal (2) G-P(sol) polarization free energy of solvation -34.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds