Wall clock time and date at job start Tue Mar 31 2020 11:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36943 * 120.00126 * 2 1 4 4 H 1.08000 * 119.99700 * 164.13064 * 3 2 1 5 5 C 1.38813 * 119.99896 * 344.12798 * 3 2 1 6 6 N 1.31620 * 119.99850 * 343.93046 * 5 3 2 7 7 Si 1.86799 * 119.99713 * 163.93266 * 5 3 2 8 8 H 1.48503 * 109.47265 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47171 * 120.00064 * 7 5 3 10 10 H 1.48502 * 109.46730 * 239.99658 * 7 5 3 11 11 C 1.46497 * 119.99720 * 180.27410 * 2 1 3 12 12 H 1.09005 * 109.49898 * 179.66012 * 11 2 1 13 13 C 1.53045 * 109.49859 * 299.72448 * 11 2 1 14 14 C 1.53040 * 109.53749 * 181.31846 * 13 11 2 15 15 C 1.53191 * 109.31158 * 298.63660 * 14 13 11 16 16 N 1.46919 * 108.77732 * 54.63587 * 15 14 13 17 17 C 1.34778 * 120.63098 * 126.37061 * 16 15 14 18 18 O 1.21628 * 120.00025 * 177.09216 * 17 16 15 19 19 C 1.47261 * 120.00181 * 357.09292 * 17 16 15 20 20 C 1.36766 * 126.93938 * 29.24931 * 19 17 16 21 21 N 1.34659 * 108.39531 * 179.83820 * 20 19 17 22 22 H 0.97001 * 124.85265 * 180.19218 * 21 20 19 23 23 C 1.36445 * 110.29711 * 0.44620 * 21 20 19 24 24 C 1.34486 * 108.85814 * 359.72791 * 23 21 20 25 25 C 1.50698 * 126.83622 * 180.02562 * 24 23 21 26 26 C 1.52999 * 117.49577 * 8.57287 * 25 24 23 27 27 C 1.52993 * 60.00383 * 252.51503 * 26 25 24 28 28 C 1.46928 * 118.74014 * 306.38677 * 16 15 14 29 29 H 1.09005 * 109.46972 * 84.05827 * 1 2 3 30 30 H 1.08999 * 109.47361 * 204.06327 * 1 2 3 31 31 H 1.09003 * 109.47116 * 324.06412 * 1 2 3 32 32 H 0.97001 * 119.99610 * 179.97438 * 6 5 3 33 33 H 1.08997 * 109.45884 * 301.33922 * 13 11 2 34 34 H 1.08997 * 109.45785 * 61.29387 * 13 11 2 35 35 H 1.08998 * 109.49806 * 58.58790 * 14 13 11 36 36 H 1.08993 * 109.49996 * 178.68389 * 14 13 11 37 37 H 1.08998 * 109.58777 * 174.42693 * 15 14 13 38 38 H 1.09002 * 109.58406 * 294.70477 * 15 14 13 39 39 H 1.08004 * 125.80772 * 359.97438 * 20 19 17 40 40 H 1.08001 * 125.57225 * 179.74659 * 23 21 20 41 41 H 1.08990 * 115.55075 * 154.28745 * 25 24 23 42 42 H 1.08998 * 117.50473 * 0.02562 * 26 25 24 43 43 H 1.09005 * 117.49590 * 145.02195 * 26 25 24 44 44 H 1.09001 * 117.50147 * 252.51943 * 27 26 25 45 45 H 1.08994 * 117.50137 * 107.48906 * 27 26 25 46 46 H 1.08997 * 109.59266 * 293.82647 * 28 16 15 47 47 H 1.08997 * 109.58703 * 173.39277 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1989 1.2037 0.2558 5 6 1.4954 2.3652 -0.3288 6 7 0.3294 2.3230 -0.9379 7 14 2.2697 4.0119 0.0933 8 1 3.5718 3.7874 0.7712 9 1 2.4874 4.7904 -1.1525 10 1 1.3652 4.7670 0.9971 11 6 2.1974 -1.2687 -0.0061 12 1 3.2692 -1.0701 -0.0112 13 6 1.8333 -2.0748 1.2429 14 6 2.6227 -3.3858 1.2541 15 6 2.2497 -4.2123 0.0195 16 7 2.4604 -3.3914 -1.1806 17 6 3.2273 -3.8404 -2.1938 18 8 3.3513 -3.1745 -3.2040 19 6 3.9152 -5.1373 -2.0778 20 6 3.5052 -6.2235 -1.3549 21 7 4.4108 -7.2071 -1.5151 22 1 4.3527 -8.0857 -1.1082 23 6 5.4247 -6.7894 -2.3270 24 6 5.1819 -5.5230 -2.7091 25 6 6.0399 -4.6702 -3.6077 26 6 7.2160 -5.3485 -4.3131 27 6 7.4727 -4.3846 -3.1531 28 6 1.8195 -2.0713 -1.2550 29 1 -0.3633 0.1064 -1.0222 30 1 -0.3634 -0.9383 0.4190 31 1 -0.3633 0.8321 0.6031 32 1 -0.1280 3.1470 -1.1673 33 1 2.0786 -1.4956 2.1331 34 1 0.7656 -2.2937 1.2353 35 1 3.6905 -3.1677 1.2369 36 1 2.3805 -3.9486 2.1555 37 1 2.8799 -5.1003 -0.0299 38 1 1.2030 -4.5102 0.0818 39 1 2.6066 -6.2830 -0.7587 40 1 6.2819 -7.3794 -2.6158 41 1 5.5163 -3.8810 -4.1471 42 1 7.3689 -6.4117 -4.1277 43 1 7.4662 -5.0057 -5.3171 44 1 7.8917 -3.4075 -3.3938 45 1 7.7945 -4.8135 -2.2041 46 1 0.7371 -2.1925 -1.2978 47 1 2.1661 -1.5466 -2.1452 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027634363.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:26 Heat of formation + Delta-G solvation = 58.658008 kcal Electronic energy + Delta-G solvation = -27270.200788 eV Core-core repulsion = 23648.117422 eV Total energy + Delta-G solvation = -3622.083367 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.32702 -40.65530 -38.71454 -37.89467 -36.75177 -34.04136 -32.79483 -31.97605 -30.81724 -29.45541 -28.08263 -26.68790 -25.28938 -24.10716 -23.41011 -23.16454 -22.79745 -21.01469 -20.38632 -19.47954 -18.97165 -18.55884 -17.54805 -16.99102 -16.57109 -16.19834 -16.10439 -15.66850 -15.41800 -15.26074 -15.15459 -14.79300 -14.65249 -14.42057 -14.34910 -13.85023 -13.69389 -13.43147 -13.15435 -12.90588 -12.81327 -12.57670 -12.47039 -12.35600 -12.19732 -12.07692 -12.03201 -11.71294 -11.67947 -11.47235 -11.40393 -11.23869 -10.79696 -10.65049 -9.72550 -9.37558 -9.05550 -8.83090 -7.85117 -5.27655 0.86034 1.43194 1.44145 1.44190 1.55302 1.99844 2.39993 2.49210 2.55083 3.15389 3.27223 3.61564 3.75269 3.80761 4.00289 4.05362 4.11262 4.15632 4.20782 4.27024 4.29581 4.33686 4.37809 4.61376 4.62534 4.71647 4.78565 4.80194 4.84436 4.89403 4.95381 5.00188 5.07468 5.15635 5.18602 5.28151 5.29140 5.39294 5.43548 5.54534 5.57183 5.62945 5.72492 5.77120 5.98841 6.28476 6.60870 6.76022 7.12523 7.35050 7.85727 8.25817 9.18319 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016487 B = 0.003499 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.901164 B = 8000.717304 C = 8986.688426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.611 5.611 3 C -0.264 4.264 4 H 0.067 0.933 5 C -0.055 4.055 6 N -0.939 5.939 7 Si 0.969 3.031 8 H -0.268 1.268 9 H -0.295 1.295 10 H -0.285 1.285 11 C 0.168 3.832 12 H 0.038 0.962 13 C -0.121 4.121 14 C -0.121 4.121 15 C 0.079 3.921 16 N -0.603 5.603 17 C 0.574 3.426 18 O -0.605 6.605 19 C -0.256 4.256 20 C 0.057 3.943 21 N -0.527 5.527 22 H 0.442 0.558 23 C 0.002 3.998 24 C -0.116 4.116 25 C -0.111 4.111 26 C -0.152 4.152 27 C -0.174 4.174 28 C 0.116 3.884 29 H -0.005 1.005 30 H 0.037 0.963 31 H 0.022 0.978 32 H 0.248 0.752 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.112 0.888 37 H 0.131 0.869 38 H 0.091 0.909 39 H 0.219 0.781 40 H 0.202 0.798 41 H 0.073 0.927 42 H 0.121 0.879 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.106 0.894 46 H 0.059 0.941 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.464 -27.739 4.209 29.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.333 5.333 3 C -0.394 4.394 4 H 0.085 0.915 5 C -0.250 4.250 6 N -0.586 5.586 7 Si 0.797 3.203 8 H -0.193 1.193 9 H -0.222 1.222 10 H -0.211 1.211 11 C 0.060 3.940 12 H 0.056 0.944 13 C -0.161 4.161 14 C -0.160 4.160 15 C -0.042 4.042 16 N -0.335 5.335 17 C 0.366 3.634 18 O -0.487 6.487 19 C -0.266 4.266 20 C -0.079 4.079 21 N -0.123 5.123 22 H 0.283 0.717 23 C -0.127 4.127 24 C -0.122 4.122 25 C -0.130 4.130 26 C -0.188 4.188 27 C -0.211 4.211 28 C -0.009 4.009 29 H 0.013 0.987 30 H 0.055 0.945 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.130 0.870 37 H 0.148 0.852 38 H 0.109 0.891 39 H 0.235 0.765 40 H 0.218 0.782 41 H 0.091 0.909 42 H 0.139 0.861 43 H 0.115 0.885 44 H 0.103 0.897 45 H 0.124 0.876 46 H 0.077 0.923 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.432 -27.412 3.722 29.228 hybrid contribution -0.129 1.880 -0.379 1.923 sum 9.303 -25.532 3.343 27.379 Atomic orbital electron populations 1.20510 0.82229 0.96238 0.97315 1.44268 1.02376 1.00993 1.85692 1.19615 0.94884 0.85704 1.39197 0.91528 1.25670 0.98314 1.01363 0.99633 1.70302 1.17842 1.26476 1.43979 0.85172 0.78041 0.79910 0.77149 1.19273 1.22211 1.21142 1.20759 0.94501 0.85273 0.93445 0.94364 1.21919 1.00696 0.96365 0.97089 1.21881 0.99718 0.95394 0.98975 1.22797 1.03638 0.95191 0.82566 1.48118 1.48873 1.17708 1.18755 1.18229 0.77482 0.85753 0.81958 1.90710 1.65126 1.60726 1.32146 1.20210 1.01036 0.94671 1.10722 1.22608 0.97251 0.87333 1.00758 1.41486 1.17552 1.14767 1.38446 0.71691 1.21771 0.96262 0.95063 0.99561 1.19757 0.95314 0.95035 1.02105 1.20257 0.89385 1.01408 1.01981 1.23073 0.99488 0.99405 0.96882 1.23042 0.97093 1.01002 0.99988 1.21930 0.96392 0.83082 0.99502 0.98699 0.94500 0.95912 0.94270 0.92585 0.91514 0.92706 0.86972 0.85171 0.89131 0.76545 0.78171 0.90867 0.86090 0.88497 0.89663 0.87603 0.92255 0.94362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.33 7.89 127.77 1.01 10.34 16 2 N -0.61 -32.35 2.82 -702.31 -1.98 -34.33 16 3 C -0.26 -15.50 9.67 84.03 0.81 -14.69 16 4 H 0.07 3.87 7.78 -2.91 -0.02 3.85 16 5 C -0.06 -3.26 5.07 84.86 0.43 -2.83 16 6 N -0.94 -58.26 10.47 21.65 0.23 -58.03 16 7 Si 0.97 47.57 29.58 68.60 2.03 49.60 16 8 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 9 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 10 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 11 C 0.17 7.33 2.74 45.07 0.12 7.45 16 12 H 0.04 1.83 7.82 -2.38 -0.02 1.81 16 13 C -0.12 -3.92 5.14 30.62 0.16 -3.76 16 14 C -0.12 -2.70 6.08 30.67 0.19 -2.51 16 15 C 0.08 1.64 5.56 86.36 0.48 2.12 16 16 N -0.60 -20.36 2.97 -822.98 -2.45 -22.80 16 17 C 0.57 21.65 7.63 86.62 0.66 22.31 16 18 O -0.60 -29.55 15.30 -4.12 -0.06 -29.61 16 19 C -0.26 -6.97 5.89 -19.04 -0.11 -7.08 16 20 C 0.06 0.85 9.65 83.91 0.81 1.66 16 21 N -0.53 -4.72 5.90 -194.56 -1.15 -5.87 16 22 H 0.44 -0.05 8.96 -92.71 -0.83 -0.88 16 23 C 0.00 0.03 11.26 83.12 0.94 0.97 16 24 C -0.12 -2.88 6.01 -18.52 -0.11 -2.99 16 25 C -0.11 -3.07 6.05 -11.54 -0.07 -3.14 16 26 C -0.15 -2.79 10.02 30.59 0.31 -2.48 16 27 C -0.17 -3.83 10.23 30.59 0.31 -3.52 16 28 C 0.12 4.99 5.78 86.36 0.50 5.48 16 29 H -0.01 -0.31 7.47 -2.38 -0.02 -0.32 16 30 H 0.04 1.57 6.48 -2.39 -0.02 1.55 16 31 H 0.02 1.25 6.99 -2.39 -0.02 1.23 16 32 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 33 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.07 2.05 6.73 -2.39 -0.02 2.04 16 35 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.13 1.86 3.28 -2.39 -0.01 1.86 16 38 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.22 1.66 5.86 -2.91 -0.02 1.64 16 40 H 0.20 1.32 7.16 -2.91 -0.02 1.30 16 41 H 0.07 2.71 7.15 -2.39 -0.02 2.70 16 42 H 0.12 1.45 7.00 -2.39 -0.02 1.43 16 43 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 44 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.06 2.50 7.50 -2.39 -0.02 2.48 16 47 H 0.04 2.02 7.02 -2.39 -0.02 2.00 16 Total: -1.00 -86.88 365.54 3.21 -83.67 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.16 Total: 10.03 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 6.43 Total: 7.34 kcal Atomic # 7 Polarization: -115.68 SS G_CDS: -5.35 Total: -121.03 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -0.06 Total: -29.61 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -86.88 3.21 -83.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027634363.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.331 kcal (2) G-P(sol) polarization free energy of solvation -86.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds