Wall clock time and date at job start Tue Mar 31 2020 11:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36946 * 120.00036 * 2 1 4 4 H 1.08006 * 119.99816 * 204.41252 * 3 2 1 5 5 C 1.38805 * 119.99796 * 24.41381 * 3 2 1 6 6 N 1.31616 * 120.00536 * 15.17928 * 5 3 2 7 7 Si 1.86804 * 119.99670 * 195.18278 * 5 3 2 8 8 H 1.48505 * 109.46952 * 90.00021 * 7 5 3 9 9 H 1.48494 * 109.47039 * 209.99717 * 7 5 3 10 10 H 1.48498 * 109.47161 * 330.00003 * 7 5 3 11 11 C 1.46502 * 119.99990 * 180.02562 * 2 1 3 12 12 H 1.09000 * 109.52297 * 179.91576 * 11 2 1 13 13 C 1.53038 * 109.49843 * 59.83842 * 11 2 1 14 14 C 1.53034 * 109.53881 * 178.68495 * 13 11 2 15 15 C 1.52761 * 109.38404 * 61.23844 * 14 13 11 16 16 N 1.46928 * 109.00914 * 305.58622 * 15 14 13 17 17 C 1.34768 * 120.63302 * 233.58268 * 16 15 14 18 18 O 1.21695 * 120.00246 * 179.63979 * 17 16 15 19 19 C 1.46679 * 119.99938 * 359.64394 * 17 16 15 20 20 C 1.37761 * 126.22580 * 154.74190 * 19 17 16 21 21 C 1.40097 * 107.10773 * 180.02562 * 20 19 17 22 22 C 1.35321 * 107.93412 * 359.97438 * 21 20 19 23 23 N 1.36014 * 108.67390 * 0.02562 * 22 21 20 24 24 H 0.97003 * 125.63170 * 179.97438 * 23 22 21 25 25 C 1.51497 * 110.13210 * 180.02562 * 22 21 20 26 26 C 1.54408 * 105.02798 * 342.99017 * 25 22 21 27 27 C 1.51408 * 141.72791 * 179.97438 * 21 20 19 28 28 C 1.46928 * 118.73428 * 53.30855 * 16 15 14 29 29 H 1.08999 * 109.47557 * 272.31092 * 1 2 3 30 30 H 1.09002 * 109.47127 * 32.30414 * 1 2 3 31 31 H 1.09003 * 109.47318 * 152.30448 * 1 2 3 32 32 H 0.96996 * 120.00296 * 179.97438 * 6 5 3 33 33 H 1.09002 * 109.45687 * 298.70404 * 13 11 2 34 34 H 1.09002 * 109.46060 * 58.67461 * 13 11 2 35 35 H 1.09006 * 109.50071 * 181.31375 * 14 13 11 36 36 H 1.09005 * 109.49898 * 301.41250 * 14 13 11 37 37 H 1.09001 * 109.50925 * 185.70535 * 15 14 13 38 38 H 1.08995 * 109.43471 * 65.42666 * 15 14 13 39 39 H 1.08004 * 126.44548 * 0.04998 * 20 19 17 40 40 H 1.09006 * 110.33373 * 224.10575 * 25 22 21 41 41 H 1.08997 * 110.42236 * 101.92291 * 25 22 21 42 42 H 1.09000 * 110.92148 * 144.02288 * 26 25 22 43 43 H 1.09000 * 110.92504 * 267.62929 * 26 25 22 44 44 H 1.09005 * 110.32929 * 78.09829 * 27 21 20 45 45 H 1.09007 * 110.37395 * 315.83702 * 27 21 20 46 46 H 1.09002 * 109.58491 * 66.43085 * 28 16 15 47 47 H 1.09002 * 109.58373 * 186.71244 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1573 1.2278 -0.3866 5 6 1.5487 2.3343 0.4969 6 7 0.4605 2.2425 1.2315 7 14 2.2844 4.0101 0.1227 8 1 1.6923 4.5419 -1.1311 9 1 1.9909 4.9406 1.2421 10 1 3.7546 3.8800 -0.0405 11 6 2.1974 -1.2687 -0.0006 12 1 3.2693 -1.0705 -0.0020 13 6 1.8251 -2.0730 -1.2482 14 6 2.6144 -3.3840 -1.2665 15 6 2.2540 -4.2099 -0.0330 16 7 2.4682 -3.3930 1.1693 17 6 3.2417 -3.8435 2.1767 18 8 3.4166 -3.1545 3.1645 19 6 3.8729 -5.1642 2.0826 20 6 5.0200 -5.5663 2.7310 21 6 5.2610 -6.8946 2.3563 22 6 4.2789 -7.2723 1.5054 23 7 3.4275 -6.2260 1.3311 24 1 2.6368 -6.2284 0.7692 25 6 4.4914 -8.7070 1.0677 26 6 5.9624 -9.0189 1.4185 27 6 6.2330 -8.0342 2.5771 28 6 1.8278 -2.0731 1.2497 29 1 -0.3634 0.0414 1.0268 30 1 -0.3633 0.8686 -0.5492 31 1 -0.3634 -0.9099 -0.4776 32 1 0.0408 3.0450 1.5790 33 1 0.7574 -2.2920 -1.2338 34 1 2.0647 -1.4926 -2.1393 35 1 2.3661 -3.9456 -2.1671 36 1 3.6823 -3.1659 -1.2559 37 1 2.8875 -5.0959 0.0096 38 1 1.2074 -4.5090 -0.0899 39 1 5.6203 -4.9700 3.4021 40 1 4.3296 -8.8034 -0.0059 41 1 3.8228 -9.3737 1.6121 42 1 6.0728 -10.0509 1.7514 43 1 6.6167 -8.8130 0.5714 44 1 6.0409 -8.5154 3.5361 45 1 7.2599 -7.6710 2.5336 46 1 0.7457 -2.1943 1.2995 47 1 2.1783 -1.5505 2.1398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027646632.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:52 Heat of formation + Delta-G solvation = 59.748761 kcal Electronic energy + Delta-G solvation = -27102.354175 eV Core-core repulsion = 23480.318106 eV Total energy + Delta-G solvation = -3622.036068 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.90316 -39.60995 -37.41217 -36.25610 -35.09356 -32.40078 -31.43792 -31.12767 -29.30169 -27.85680 -27.49148 -26.00949 -25.26750 -23.74937 -22.33019 -21.76886 -20.99100 -19.75449 -19.34661 -18.87307 -17.35212 -16.72211 -16.23622 -15.88102 -15.50678 -15.22940 -14.75278 -14.33416 -13.96610 -13.79417 -13.68136 -13.45696 -13.29627 -13.16413 -12.96749 -12.73524 -12.56210 -12.31325 -12.05517 -11.87422 -11.55970 -11.43388 -11.29568 -11.16918 -11.01651 -10.82513 -10.63929 -10.44302 -10.37186 -10.19846 -9.93155 -9.79640 -9.70544 -8.85798 -8.59800 -8.40897 -7.99532 -6.75011 -5.74072 -3.20660 1.50778 2.55832 2.70172 3.07924 3.39876 3.46156 3.47812 3.50365 4.27004 4.37280 4.48541 4.58916 4.70556 4.76128 4.98075 5.01978 5.15601 5.16204 5.33987 5.39663 5.43823 5.44686 5.45246 5.47168 5.61642 5.67790 5.76394 5.84484 5.88212 5.92792 5.99548 6.06536 6.13550 6.19693 6.33672 6.46381 6.60879 6.69730 6.73175 6.87928 6.92705 6.96582 7.26256 7.31450 7.60091 7.66918 7.81520 8.33349 8.40712 9.22030 9.84567 10.34109 11.31237 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026080 B = 0.002900 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.353048 B = 9653.668100 C =10049.085119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.589 5.589 3 C -0.259 4.259 4 H 0.068 0.932 5 C 0.005 3.995 6 N -0.903 5.903 7 Si 0.905 3.095 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.168 3.832 12 H 0.066 0.934 13 C -0.133 4.133 14 C -0.129 4.129 15 C 0.086 3.914 16 N -0.604 5.604 17 C 0.583 3.417 18 O -0.525 6.525 19 C -0.030 4.030 20 C -0.094 4.094 21 C -0.193 4.193 22 C 0.002 3.998 23 N -0.525 5.525 24 H 0.417 0.583 25 C -0.040 4.040 26 C -0.115 4.115 27 C -0.049 4.049 28 C 0.099 3.901 29 H 0.028 0.972 30 H 0.043 0.957 31 H 0.000 1.000 32 H 0.253 0.747 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.145 0.855 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.062 0.938 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.238 -24.364 -3.676 25.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.311 5.311 3 C -0.388 4.388 4 H 0.086 0.914 5 C -0.194 4.194 6 N -0.547 5.547 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.059 3.941 12 H 0.084 0.916 13 C -0.172 4.172 14 C -0.168 4.168 15 C -0.038 4.038 16 N -0.337 5.337 17 C 0.371 3.629 18 O -0.401 6.401 19 C -0.143 4.143 20 C -0.120 4.120 21 C -0.199 4.199 22 C -0.115 4.115 23 N -0.128 5.128 24 H 0.261 0.739 25 C -0.078 4.078 26 C -0.153 4.153 27 C -0.087 4.087 28 C -0.024 4.024 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.019 0.981 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.163 0.837 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.027 -23.747 -3.145 24.701 hybrid contribution -0.276 1.052 -0.442 1.174 sum 5.750 -22.694 -3.587 23.685 Atomic orbital electron populations 1.20778 0.82773 0.95987 0.99027 1.43924 1.01725 1.00017 1.85398 1.19208 0.99444 0.85406 1.34787 0.91405 1.25055 0.98256 0.98675 0.97399 1.70064 1.21819 1.27582 1.35202 0.86245 0.78767 0.84088 0.77391 1.21494 1.21721 1.20407 1.20641 0.96647 0.86259 0.90567 0.91598 1.22085 0.99539 0.94841 1.00783 1.21804 1.01382 0.97374 0.96232 1.22144 1.01088 0.94525 0.85993 1.48231 1.48925 1.19560 1.17015 1.17112 0.78464 0.84195 0.83107 1.90861 1.61082 1.57327 1.30854 1.20339 1.00955 0.89367 1.03599 1.20656 0.96153 0.93994 1.01212 1.20280 1.00282 0.95294 1.04057 1.21290 0.93815 0.92634 1.03737 1.42311 1.23334 1.09599 1.37559 0.73890 1.20673 0.97831 0.88088 1.01190 1.22329 0.94736 0.99466 0.98759 1.20484 0.97741 0.92205 0.98290 1.22609 0.96629 0.80440 1.02706 0.95402 0.93806 0.98119 0.93661 0.92227 0.91517 0.91178 0.91526 0.89953 0.91301 0.83734 0.90954 0.90102 0.90229 0.90694 0.90932 0.91174 0.91959 0.88712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.83 7.95 59.84 0.48 4.31 16 2 N -0.59 -14.63 2.81 -173.35 -0.49 -15.12 16 3 C -0.26 -7.17 9.55 -15.06 -0.14 -7.31 16 4 H 0.07 1.86 7.85 -52.48 -0.41 1.44 16 5 C 0.01 0.15 5.03 -17.43 -0.09 0.06 16 6 N -0.90 -26.54 10.95 55.49 0.61 -25.93 16 7 Si 0.91 22.14 29.58 -169.99 -5.03 17.11 16 8 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 9 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 C 0.17 3.45 2.74 -67.81 -0.19 3.26 16 12 H 0.07 1.45 7.88 -51.93 -0.41 1.04 16 13 C -0.13 -2.16 5.12 -26.69 -0.14 -2.30 16 14 C -0.13 -1.61 6.06 -26.84 -0.16 -1.78 16 15 C 0.09 1.03 5.55 -3.93 -0.02 1.01 16 16 N -0.60 -9.86 2.98 -174.57 -0.52 -10.38 16 17 C 0.58 10.35 7.64 -12.86 -0.10 10.26 16 18 O -0.53 -11.47 16.39 5.19 0.09 -11.39 16 19 C -0.03 -0.44 6.46 -82.09 -0.53 -0.97 16 20 C -0.09 -1.33 10.75 -39.06 -0.42 -1.75 16 21 C -0.19 -2.23 6.89 -104.62 -0.72 -2.95 16 22 C 0.00 0.02 8.01 -81.39 -0.65 -0.63 16 23 N -0.53 -5.81 4.82 -5.44 -0.03 -5.84 16 24 H 0.42 3.63 6.13 -40.82 -0.25 3.38 16 25 C -0.04 -0.26 6.79 -26.75 -0.18 -0.44 16 26 C -0.12 -0.68 7.12 -25.24 -0.18 -0.86 16 27 C -0.05 -0.40 6.79 -26.78 -0.18 -0.58 16 28 C 0.10 1.96 5.80 -3.71 -0.02 1.94 16 29 H 0.03 0.73 7.47 -51.93 -0.39 0.34 16 30 H 0.04 1.14 7.31 -51.93 -0.38 0.76 16 31 H 0.00 0.01 6.45 -51.93 -0.33 -0.33 16 32 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.06 0.96 6.71 -51.93 -0.35 0.61 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.83 3.65 -51.93 -0.19 0.64 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.14 2.02 8.06 -52.48 -0.42 1.60 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.06 1.22 7.51 -51.93 -0.39 0.83 16 47 H 0.09 2.22 7.00 -51.93 -0.36 1.86 16 LS Contribution 362.82 15.07 5.47 5.47 Total: -1.00 -33.16 362.82 -10.40 -43.56 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -7.25 Total: 1.25 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -3.25 Total: 1.27 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -0.43 Total: -57.26 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.16 -10.40 -43.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027646632.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.312 kcal (2) G-P(sol) polarization free energy of solvation -33.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds