Wall clock time and date at job start Tue Mar 31 2020 11:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36946 * 120.00036 * 2 1 4 4 H 1.08006 * 119.99816 * 204.41252 * 3 2 1 5 5 C 1.38805 * 119.99796 * 24.41381 * 3 2 1 6 6 N 1.31616 * 120.00536 * 15.17928 * 5 3 2 7 7 Si 1.86804 * 119.99670 * 195.18278 * 5 3 2 8 8 H 1.48505 * 109.46952 * 90.00021 * 7 5 3 9 9 H 1.48494 * 109.47039 * 209.99717 * 7 5 3 10 10 H 1.48498 * 109.47161 * 330.00003 * 7 5 3 11 11 C 1.46502 * 119.99990 * 180.02562 * 2 1 3 12 12 H 1.09000 * 109.52297 * 179.91576 * 11 2 1 13 13 C 1.53038 * 109.49843 * 59.83842 * 11 2 1 14 14 C 1.53034 * 109.53881 * 178.68495 * 13 11 2 15 15 C 1.52761 * 109.38404 * 61.23844 * 14 13 11 16 16 N 1.46928 * 109.00914 * 305.58622 * 15 14 13 17 17 C 1.34768 * 120.63302 * 233.58268 * 16 15 14 18 18 O 1.21695 * 120.00246 * 179.63979 * 17 16 15 19 19 C 1.46679 * 119.99938 * 359.64394 * 17 16 15 20 20 C 1.37761 * 126.22580 * 154.74190 * 19 17 16 21 21 C 1.40097 * 107.10773 * 180.02562 * 20 19 17 22 22 C 1.35321 * 107.93412 * 359.97438 * 21 20 19 23 23 N 1.36014 * 108.67390 * 0.02562 * 22 21 20 24 24 H 0.97003 * 125.63170 * 179.97438 * 23 22 21 25 25 C 1.51497 * 110.13210 * 180.02562 * 22 21 20 26 26 C 1.54408 * 105.02798 * 342.99017 * 25 22 21 27 27 C 1.51408 * 141.72791 * 179.97438 * 21 20 19 28 28 C 1.46928 * 118.73428 * 53.30855 * 16 15 14 29 29 H 1.08999 * 109.47557 * 272.31092 * 1 2 3 30 30 H 1.09002 * 109.47127 * 32.30414 * 1 2 3 31 31 H 1.09003 * 109.47318 * 152.30448 * 1 2 3 32 32 H 0.96996 * 120.00296 * 179.97438 * 6 5 3 33 33 H 1.09002 * 109.45687 * 298.70404 * 13 11 2 34 34 H 1.09002 * 109.46060 * 58.67461 * 13 11 2 35 35 H 1.09006 * 109.50071 * 181.31375 * 14 13 11 36 36 H 1.09005 * 109.49898 * 301.41250 * 14 13 11 37 37 H 1.09001 * 109.50925 * 185.70535 * 15 14 13 38 38 H 1.08995 * 109.43471 * 65.42666 * 15 14 13 39 39 H 1.08004 * 126.44548 * 0.04998 * 20 19 17 40 40 H 1.09006 * 110.33373 * 224.10575 * 25 22 21 41 41 H 1.08997 * 110.42236 * 101.92291 * 25 22 21 42 42 H 1.09000 * 110.92148 * 144.02288 * 26 25 22 43 43 H 1.09000 * 110.92504 * 267.62929 * 26 25 22 44 44 H 1.09005 * 110.32929 * 78.09829 * 27 21 20 45 45 H 1.09007 * 110.37395 * 315.83702 * 27 21 20 46 46 H 1.09002 * 109.58491 * 66.43085 * 28 16 15 47 47 H 1.09002 * 109.58373 * 186.71244 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1573 1.2278 -0.3866 5 6 1.5487 2.3343 0.4969 6 7 0.4605 2.2425 1.2315 7 14 2.2844 4.0101 0.1227 8 1 1.6923 4.5419 -1.1311 9 1 1.9909 4.9406 1.2421 10 1 3.7546 3.8800 -0.0405 11 6 2.1974 -1.2687 -0.0006 12 1 3.2693 -1.0705 -0.0020 13 6 1.8251 -2.0730 -1.2482 14 6 2.6144 -3.3840 -1.2665 15 6 2.2540 -4.2099 -0.0330 16 7 2.4682 -3.3930 1.1693 17 6 3.2417 -3.8435 2.1767 18 8 3.4166 -3.1545 3.1645 19 6 3.8729 -5.1642 2.0826 20 6 5.0200 -5.5663 2.7310 21 6 5.2610 -6.8946 2.3563 22 6 4.2789 -7.2723 1.5054 23 7 3.4275 -6.2260 1.3311 24 1 2.6368 -6.2284 0.7692 25 6 4.4914 -8.7070 1.0677 26 6 5.9624 -9.0189 1.4185 27 6 6.2330 -8.0342 2.5771 28 6 1.8278 -2.0731 1.2497 29 1 -0.3634 0.0414 1.0268 30 1 -0.3633 0.8686 -0.5492 31 1 -0.3634 -0.9099 -0.4776 32 1 0.0408 3.0450 1.5790 33 1 0.7574 -2.2920 -1.2338 34 1 2.0647 -1.4926 -2.1393 35 1 2.3661 -3.9456 -2.1671 36 1 3.6823 -3.1659 -1.2559 37 1 2.8875 -5.0959 0.0096 38 1 1.2074 -4.5090 -0.0899 39 1 5.6203 -4.9700 3.4021 40 1 4.3296 -8.8034 -0.0059 41 1 3.8228 -9.3737 1.6121 42 1 6.0728 -10.0509 1.7514 43 1 6.6167 -8.8130 0.5714 44 1 6.0409 -8.5154 3.5361 45 1 7.2599 -7.6710 2.5336 46 1 0.7457 -2.1943 1.2995 47 1 2.1783 -1.5505 2.1398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027646632.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:51 Heat of formation + Delta-G solvation = 39.506196 kcal Electronic energy + Delta-G solvation = -27103.231958 eV Core-core repulsion = 23480.318106 eV Total energy + Delta-G solvation = -3622.913852 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.86915 -40.92103 -38.94145 -37.15348 -36.65549 -34.04413 -32.95917 -32.14562 -30.88962 -28.94018 -28.16805 -28.06562 -26.48961 -25.41393 -23.43810 -23.13500 -21.90788 -21.02389 -20.25777 -20.21623 -18.90318 -18.33130 -17.41443 -17.06338 -16.70017 -16.58727 -16.20371 -15.72072 -15.45326 -15.27390 -14.90627 -14.60118 -14.55104 -14.40007 -14.04442 -13.92193 -13.82711 -13.59768 -13.51679 -12.97047 -12.85889 -12.71031 -12.53094 -12.35219 -12.27081 -12.18314 -12.14651 -11.93023 -11.84010 -11.77932 -11.60593 -11.45472 -11.19275 -10.67274 -9.94401 -9.76142 -8.92623 -8.78322 -7.88682 -5.37963 0.39933 1.42788 1.43789 1.53093 1.60778 1.68506 1.86777 2.28235 2.47492 3.24415 3.38177 3.52333 3.64032 3.84315 3.90621 3.93145 3.96126 4.14335 4.26104 4.29141 4.30836 4.40644 4.48885 4.55540 4.61989 4.68538 4.76749 4.87357 4.89642 4.93298 4.95362 5.02892 5.07708 5.12931 5.19428 5.20615 5.29477 5.33399 5.37583 5.47807 5.49103 5.59426 5.65456 5.76324 5.93818 6.28372 6.29322 6.46497 6.97209 7.10340 7.81155 8.24627 9.14337 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026080 B = 0.002900 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.353048 B = 9653.668100 C =10049.085119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.606 5.606 3 C -0.269 4.269 4 H 0.065 0.935 5 C -0.050 4.050 6 N -0.934 5.934 7 Si 0.969 3.031 8 H -0.280 1.280 9 H -0.295 1.295 10 H -0.272 1.272 11 C 0.167 3.833 12 H 0.041 0.959 13 C -0.121 4.121 14 C -0.120 4.120 15 C 0.082 3.918 16 N -0.601 5.601 17 C 0.578 3.422 18 O -0.585 6.585 19 C -0.058 4.058 20 C -0.111 4.111 21 C -0.217 4.217 22 C 0.026 3.974 23 N -0.513 5.513 24 H 0.430 0.570 25 C -0.038 4.038 26 C -0.107 4.107 27 C -0.053 4.053 28 C 0.115 3.885 29 H -0.002 1.002 30 H 0.018 0.982 31 H 0.040 0.960 32 H 0.250 0.750 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.116 0.884 36 H 0.056 0.944 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.129 0.871 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.065 0.935 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.604 -28.457 -6.352 29.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.328 5.328 3 C -0.400 4.400 4 H 0.082 0.918 5 C -0.245 4.245 6 N -0.580 5.580 7 Si 0.797 3.203 8 H -0.206 1.206 9 H -0.222 1.222 10 H -0.197 1.197 11 C 0.059 3.941 12 H 0.059 0.941 13 C -0.160 4.160 14 C -0.159 4.159 15 C -0.040 4.040 16 N -0.333 5.333 17 C 0.369 3.631 18 O -0.465 6.465 19 C -0.170 4.170 20 C -0.138 4.138 21 C -0.223 4.223 22 C -0.092 4.092 23 N -0.117 5.117 24 H 0.276 0.724 25 C -0.076 4.076 26 C -0.145 4.145 27 C -0.090 4.090 28 C -0.010 4.010 29 H 0.016 0.984 30 H 0.037 0.963 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.134 0.866 36 H 0.075 0.925 37 H 0.124 0.876 38 H 0.117 0.883 39 H 0.147 0.853 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.393 -27.896 -5.884 29.217 hybrid contribution -0.305 2.192 0.419 2.253 sum 6.088 -25.703 -5.466 26.974 Atomic orbital electron populations 1.20518 0.82495 0.96706 0.97199 1.44142 1.02163 1.00852 1.85660 1.19498 0.99479 0.86922 1.34071 0.91771 1.25829 0.98994 1.02076 0.97646 1.70224 1.23217 1.28041 1.36515 0.85239 0.78303 0.79697 0.77044 1.20639 1.22162 1.19652 1.20782 0.94836 0.85438 0.93067 0.94094 1.21911 1.00731 0.95970 0.97429 1.21789 1.00115 0.95671 0.98292 1.22521 1.03530 0.94427 0.83496 1.48220 1.48144 1.18513 1.18416 1.17595 0.77949 0.85123 0.82444 1.90817 1.63188 1.59323 1.33184 1.19706 1.01840 0.88999 1.06407 1.20810 0.96270 0.95620 1.01111 1.20698 1.02171 0.94783 1.04612 1.22104 0.91921 0.93654 1.01570 1.42160 1.23768 1.08835 1.36924 0.72385 1.20929 0.98583 0.85096 1.02980 1.22379 0.94277 1.00053 0.97798 1.20630 0.96930 0.91572 0.99904 1.22075 0.96603 0.82123 1.00173 0.98414 0.96287 0.94117 0.94132 0.91172 0.92056 0.86623 0.92499 0.87570 0.88314 0.85317 0.88490 0.88166 0.87660 0.90085 0.90341 0.91175 0.91648 0.93711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.66 7.95 127.77 1.02 9.68 16 2 N -0.61 -31.06 2.81 -702.36 -1.97 -33.04 16 3 C -0.27 -15.44 9.55 84.03 0.80 -14.64 16 4 H 0.06 3.64 7.85 -2.91 -0.02 3.61 16 5 C -0.05 -2.89 5.03 84.86 0.43 -2.46 16 6 N -0.93 -57.15 10.95 21.65 0.24 -56.92 16 7 Si 0.97 46.76 29.58 68.60 2.03 48.79 16 8 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 9 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 10 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 11 C 0.17 7.01 2.74 45.07 0.12 7.13 16 12 H 0.04 1.89 7.88 -2.39 -0.02 1.87 16 13 C -0.12 -3.71 5.12 30.62 0.16 -3.56 16 14 C -0.12 -2.59 6.06 30.53 0.19 -2.41 16 15 C 0.08 1.71 5.55 86.22 0.48 2.19 16 16 N -0.60 -19.78 2.98 -824.45 -2.46 -22.23 16 17 C 0.58 21.50 7.64 86.45 0.66 22.16 16 18 O -0.58 -27.81 16.39 -4.33 -0.07 -27.88 16 19 C -0.06 -1.68 6.46 40.35 0.26 -1.42 16 20 C -0.11 -3.22 10.75 22.61 0.24 -2.97 16 21 C -0.22 -4.67 6.89 -19.86 -0.14 -4.81 16 22 C 0.03 0.44 8.01 41.49 0.33 0.78 16 23 N -0.51 -10.02 4.82 -171.11 -0.83 -10.84 16 24 H 0.43 5.82 6.13 -92.71 -0.57 5.26 16 25 C -0.04 -0.30 6.79 30.58 0.21 -0.09 16 26 C -0.11 -0.76 7.12 31.56 0.22 -0.54 16 27 C -0.05 -0.72 6.79 30.56 0.21 -0.51 16 28 C 0.11 4.75 5.80 86.36 0.50 5.25 16 29 H 0.00 -0.13 7.47 -2.39 -0.02 -0.15 16 30 H 0.02 0.99 7.31 -2.39 -0.02 0.98 16 31 H 0.04 1.64 6.45 -2.39 -0.02 1.63 16 32 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 33 H 0.07 2.02 6.71 -2.39 -0.02 2.01 16 34 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.12 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.11 1.75 3.65 -2.40 -0.01 1.74 16 38 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 40 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 41 H 0.10 0.53 8.14 -2.39 -0.02 0.52 16 42 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 45 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 46 H 0.07 2.63 7.51 -2.39 -0.02 2.61 16 47 H 0.04 2.28 7.00 -2.39 -0.02 2.27 16 Total: -1.00 -79.53 362.82 3.04 -76.48 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.41 Total: 11.86 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 5.69 Total: 13.78 kcal Atomic # 7 Polarization: -118.01 SS G_CDS: -5.01 Total: -123.03 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.07 Total: -27.88 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -79.53 3.04 -76.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027646632.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.988 kcal (2) G-P(sol) polarization free energy of solvation -79.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds