Wall clock time and date at job start Tue Mar 31 2020 11:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36935 * 120.00038 * 2 1 4 4 H 1.08005 * 120.00021 * 203.01910 * 3 2 1 5 5 C 1.38816 * 119.99842 * 23.02050 * 3 2 1 6 6 N 1.31620 * 119.99769 * 14.70329 * 5 3 2 7 7 Si 1.86801 * 119.99947 * 194.69626 * 5 3 2 8 8 H 1.48501 * 109.46892 * 60.00353 * 7 5 3 9 9 H 1.48499 * 109.46974 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47313 * 300.00426 * 7 5 3 11 11 C 1.46504 * 119.99995 * 180.02562 * 2 1 3 12 12 H 1.09001 * 109.49767 * 180.02562 * 11 2 1 13 13 C 1.53046 * 109.49422 * 300.15447 * 11 2 1 14 14 C 1.53040 * 109.53739 * 181.31696 * 13 11 2 15 15 C 1.53625 * 109.24176 * 298.51511 * 14 13 11 16 16 N 1.46923 * 108.54603 * 54.85210 * 15 14 13 17 17 C 1.34779 * 120.63116 * 126.36844 * 16 15 14 18 18 O 1.21695 * 120.00296 * 188.59758 * 17 16 15 19 19 C 1.46684 * 119.99814 * 8.59420 * 17 16 15 20 20 C 1.37754 * 126.22490 * 209.55986 * 19 17 16 21 21 C 1.40102 * 107.10477 * 180.20858 * 20 19 17 22 22 C 1.35327 * 107.93271 * 359.63212 * 21 20 19 23 23 N 1.36004 * 108.67568 * 0.36220 * 22 21 20 24 24 H 0.96998 * 125.63441 * 179.75932 * 23 22 21 25 25 C 1.51502 * 110.12832 * 180.21012 * 22 21 20 26 26 C 1.54408 * 105.03009 * 17.24661 * 25 22 21 27 27 C 1.51359 * 141.73598 * 180.56095 * 21 20 19 28 28 C 1.46924 * 118.74000 * 306.09755 * 16 15 14 29 29 H 1.08999 * 109.46811 * 275.32360 * 1 2 3 30 30 H 1.08999 * 109.47395 * 35.32243 * 1 2 3 31 31 H 1.09003 * 109.47434 * 155.32929 * 1 2 3 32 32 H 0.97004 * 119.99503 * 179.97438 * 6 5 3 33 33 H 1.08994 * 109.46094 * 301.34419 * 13 11 2 34 34 H 1.09002 * 109.45719 * 61.29594 * 13 11 2 35 35 H 1.09001 * 109.49699 * 58.58852 * 14 13 11 36 36 H 1.08993 * 109.49815 * 178.65291 * 14 13 11 37 37 H 1.09005 * 109.73701 * 295.11719 * 15 14 13 38 38 H 1.09001 * 109.66510 * 174.54926 * 15 14 13 39 39 H 1.08005 * 126.44915 * 359.93858 * 20 19 17 40 40 H 1.09004 * 110.33398 * 136.13787 * 25 22 21 41 41 H 1.09005 * 110.32904 * 258.35897 * 25 22 21 42 42 H 1.09000 * 110.91657 * 92.33800 * 26 25 22 43 43 H 1.08998 * 110.92126 * 215.93788 * 26 25 22 44 44 H 1.08998 * 110.47972 * 43.47811 * 27 21 20 45 45 H 1.08999 * 110.22911 * 281.31111 * 27 21 20 46 46 H 1.09001 * 109.58796 * 173.64520 * 28 16 15 47 47 H 1.09001 * 109.58563 * 294.06790 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1652 1.2231 -0.3658 5 6 1.5385 2.3402 0.4701 6 7 0.4299 2.2576 1.1748 7 14 2.2895 4.0107 0.1028 8 1 2.3538 4.2120 -1.3671 9 1 1.4520 5.0747 0.7124 10 1 3.6599 4.0732 0.6713 11 6 2.1975 -1.2688 -0.0006 12 1 3.2693 -1.0701 0.0000 13 6 1.8252 -2.0740 1.2466 14 6 2.6145 -3.3850 1.2637 15 6 2.2450 -4.2147 0.0247 16 7 2.4681 -3.3921 -1.1720 17 6 3.2409 -3.8421 -2.1804 18 8 3.5463 -3.0966 -3.0924 19 6 3.7139 -5.2306 -2.1785 20 6 4.8850 -5.6925 -2.7377 21 6 4.9343 -7.0738 -2.5088 22 6 3.8216 -7.4223 -1.8220 23 7 3.0691 -6.3079 -1.6176 24 1 2.2180 -6.2781 -1.1532 25 6 3.8266 -8.9112 -1.5422 26 6 5.2893 -9.3549 -1.7609 27 6 5.8041 -8.2884 -2.7520 28 6 1.8277 -2.0721 -1.2514 29 1 -0.3633 0.0953 1.0232 30 1 -0.3634 0.8385 -0.5942 31 1 -0.3634 -0.9339 -0.4290 32 1 0.0031 3.0642 1.5037 33 1 2.0646 -1.4942 2.1380 34 1 0.7576 -2.2930 1.2320 35 1 3.6824 -3.1669 1.2533 36 1 2.3668 -3.9470 2.1641 37 1 1.1962 -4.5071 0.0769 38 1 2.8727 -5.1047 -0.0214 39 1 5.6239 -5.1017 -3.2588 40 1 3.5220 -9.1044 -0.5136 41 1 3.1658 -9.4293 -2.2373 42 1 5.8500 -9.3210 -0.8267 43 1 5.3322 -10.3504 -2.2025 44 1 6.8494 -8.0557 -2.5489 45 1 5.6866 -8.6368 -3.7781 46 1 2.1801 -1.5479 -2.1397 47 1 0.7456 -2.1933 -1.3012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027646637.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:56 Heat of formation + Delta-G solvation = 49.132902 kcal Electronic energy + Delta-G solvation = -27025.390175 eV Core-core repulsion = 23402.893769 eV Total energy + Delta-G solvation = -3622.496406 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.87643 -39.64740 -37.41148 -36.23554 -35.08507 -32.36107 -31.37659 -31.17029 -29.25825 -27.89772 -27.48735 -26.01368 -25.24015 -23.72904 -22.35920 -21.69572 -21.02864 -19.71852 -19.31274 -18.86167 -17.45705 -16.72369 -16.29090 -15.88245 -15.59933 -15.22121 -14.73777 -14.25063 -13.96292 -13.82114 -13.67232 -13.46207 -13.34465 -13.17957 -12.97605 -12.69234 -12.66682 -12.34376 -12.06738 -11.93324 -11.58484 -11.45314 -11.27667 -11.09672 -10.93287 -10.86939 -10.65577 -10.44745 -10.33893 -10.16462 -9.93149 -9.89142 -9.70190 -8.89647 -8.64438 -8.40873 -8.03103 -6.75652 -5.72219 -3.18567 1.48014 2.50809 2.68378 3.01813 3.41475 3.43949 3.46132 3.49030 4.24848 4.36726 4.50403 4.59374 4.68805 4.81433 4.96784 5.06024 5.13995 5.20278 5.32194 5.40689 5.41608 5.42827 5.47557 5.49190 5.59532 5.69907 5.75056 5.80016 5.86410 5.92957 5.95725 6.10248 6.12064 6.18640 6.35320 6.47825 6.58642 6.66293 6.74556 6.87668 6.92678 6.97887 7.25246 7.33968 7.54306 7.70316 7.82407 8.25918 8.40484 9.23317 9.86072 10.34545 11.32343 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028829 B = 0.002813 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.009282 B = 9949.813450 C =10409.990839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.591 5.591 3 C -0.256 4.256 4 H 0.068 0.932 5 C 0.003 3.997 6 N -0.907 5.907 7 Si 0.905 3.095 8 H -0.283 1.283 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.169 3.831 12 H 0.066 0.934 13 C -0.132 4.132 14 C -0.129 4.129 15 C 0.096 3.904 16 N -0.605 5.605 17 C 0.586 3.414 18 O -0.526 6.526 19 C -0.031 4.031 20 C -0.095 4.095 21 C -0.193 4.193 22 C 0.005 3.995 23 N -0.523 5.523 24 H 0.415 0.585 25 C -0.040 4.040 26 C -0.115 4.115 27 C -0.049 4.049 28 C 0.098 3.902 29 H 0.032 0.968 30 H 0.040 0.960 31 H -0.001 1.001 32 H 0.253 0.747 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.144 0.856 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.092 0.908 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.076 -25.057 -2.352 25.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.313 5.313 3 C -0.386 4.386 4 H 0.086 0.914 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.735 3.265 8 H -0.210 1.210 9 H -0.217 1.217 10 H -0.209 1.209 11 C 0.060 3.940 12 H 0.085 0.915 13 C -0.171 4.171 14 C -0.168 4.168 15 C -0.028 4.028 16 N -0.339 5.339 17 C 0.373 3.627 18 O -0.402 6.402 19 C -0.144 4.144 20 C -0.122 4.122 21 C -0.199 4.199 22 C -0.112 4.112 23 N -0.121 5.121 24 H 0.254 0.746 25 C -0.078 4.078 26 C -0.153 4.153 27 C -0.087 4.087 28 C -0.025 4.025 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.017 0.983 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.162 0.838 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.111 0.889 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.943 -24.392 -2.700 25.034 hybrid contribution -0.289 1.075 0.259 1.143 sum 4.654 -23.317 -2.440 23.902 Atomic orbital electron populations 1.20793 0.82724 0.95344 0.99570 1.43876 1.01738 1.00028 1.85651 1.19189 0.98473 0.85309 1.35595 0.91408 1.24993 0.98070 0.98482 0.97954 1.70064 1.20553 1.27321 1.37188 0.86331 0.78362 0.83723 0.78120 1.20997 1.21673 1.20920 1.20581 0.96617 0.86247 0.90553 0.91547 1.22131 0.99277 0.94577 1.01159 1.21972 1.01349 0.97410 0.96074 1.22095 1.00791 0.94191 0.85702 1.48123 1.49035 1.19259 1.17447 1.17107 0.78271 0.84998 0.82274 1.90849 1.56375 1.56487 1.36482 1.20279 0.97738 0.87427 1.08907 1.20645 0.96618 0.92872 1.02016 1.20261 0.98805 0.94122 1.06744 1.21247 0.94097 0.90906 1.04933 1.41781 1.19769 1.05595 1.44911 0.74589 1.20684 0.98458 0.86648 1.02022 1.22326 0.94261 0.98684 1.00012 1.20464 0.98283 0.90791 0.99178 1.22472 0.96591 0.81050 1.02427 0.94926 0.94173 0.98251 0.93733 0.91292 0.92489 0.91541 0.91299 0.91534 0.90236 0.83790 0.90907 0.90097 0.90679 0.90203 0.91170 0.90956 0.88949 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.87 8.04 59.85 0.48 4.36 16 2 N -0.59 -14.73 2.81 -173.34 -0.49 -15.22 16 3 C -0.26 -7.12 9.57 -15.06 -0.14 -7.27 16 4 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 5 C 0.00 0.10 5.07 -17.43 -0.09 0.01 16 6 N -0.91 -26.38 10.81 55.49 0.60 -25.78 16 7 Si 0.90 22.21 29.58 -169.99 -5.03 17.19 16 8 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 9 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 C 0.17 3.48 2.74 -67.81 -0.19 3.29 16 12 H 0.07 1.47 7.87 -51.93 -0.41 1.06 16 13 C -0.13 -2.29 5.14 -26.69 -0.14 -2.43 16 14 C -0.13 -1.71 6.10 -26.39 -0.16 -1.87 16 15 C 0.10 1.15 5.31 -3.49 -0.02 1.13 16 16 N -0.61 -9.47 2.97 -174.04 -0.52 -9.99 16 17 C 0.59 9.89 7.59 -12.85 -0.10 9.80 16 18 O -0.53 -10.91 16.44 5.19 0.09 -10.82 16 19 C -0.03 -0.43 6.16 -82.09 -0.51 -0.94 16 20 C -0.10 -1.29 10.77 -39.06 -0.42 -1.71 16 21 C -0.19 -2.15 6.89 -104.64 -0.72 -2.87 16 22 C 0.01 0.05 8.01 -81.39 -0.65 -0.60 16 23 N -0.52 -5.57 4.69 -5.43 -0.03 -5.59 16 24 H 0.41 3.49 7.06 -40.82 -0.29 3.21 16 25 C -0.04 -0.25 6.79 -26.75 -0.18 -0.44 16 26 C -0.11 -0.65 7.12 -25.25 -0.18 -0.83 16 27 C -0.05 -0.39 6.78 -26.81 -0.18 -0.57 16 28 C 0.10 1.82 5.79 -3.71 -0.02 1.80 16 29 H 0.03 0.85 7.32 -51.93 -0.38 0.47 16 30 H 0.04 1.05 7.40 -51.93 -0.38 0.67 16 31 H 0.00 -0.02 6.36 -51.93 -0.33 -0.35 16 32 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.06 0.98 7.71 -51.93 -0.40 0.58 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.82 4.75 -51.93 -0.25 0.58 16 39 H 0.14 1.92 8.06 -52.48 -0.42 1.49 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.09 1.95 7.00 -51.93 -0.36 1.59 16 47 H 0.06 1.17 6.50 -51.93 -0.34 0.83 16 LS Contribution 364.11 15.07 5.49 5.49 Total: -1.00 -32.75 364.11 -10.44 -43.19 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -7.34 Total: 0.68 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -3.22 Total: 0.85 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.43 Total: -56.57 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.75 -10.44 -43.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027646637.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.319 kcal (2) G-P(sol) polarization free energy of solvation -32.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds