Wall clock time and date at job start Tue Mar 31 2020 11:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36935 * 120.00038 * 2 1 4 4 H 1.08005 * 120.00021 * 203.01910 * 3 2 1 5 5 C 1.38816 * 119.99842 * 23.02050 * 3 2 1 6 6 N 1.31620 * 119.99769 * 14.70329 * 5 3 2 7 7 Si 1.86801 * 119.99947 * 194.69626 * 5 3 2 8 8 H 1.48501 * 109.46892 * 60.00353 * 7 5 3 9 9 H 1.48499 * 109.46974 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47313 * 300.00426 * 7 5 3 11 11 C 1.46504 * 119.99995 * 180.02562 * 2 1 3 12 12 H 1.09001 * 109.49767 * 180.02562 * 11 2 1 13 13 C 1.53046 * 109.49422 * 300.15447 * 11 2 1 14 14 C 1.53040 * 109.53739 * 181.31696 * 13 11 2 15 15 C 1.53625 * 109.24176 * 298.51511 * 14 13 11 16 16 N 1.46923 * 108.54603 * 54.85210 * 15 14 13 17 17 C 1.34779 * 120.63116 * 126.36844 * 16 15 14 18 18 O 1.21695 * 120.00296 * 188.59758 * 17 16 15 19 19 C 1.46684 * 119.99814 * 8.59420 * 17 16 15 20 20 C 1.37754 * 126.22490 * 209.55986 * 19 17 16 21 21 C 1.40102 * 107.10477 * 180.20858 * 20 19 17 22 22 C 1.35327 * 107.93271 * 359.63212 * 21 20 19 23 23 N 1.36004 * 108.67568 * 0.36220 * 22 21 20 24 24 H 0.96998 * 125.63441 * 179.75932 * 23 22 21 25 25 C 1.51502 * 110.12832 * 180.21012 * 22 21 20 26 26 C 1.54408 * 105.03009 * 17.24661 * 25 22 21 27 27 C 1.51359 * 141.73598 * 180.56095 * 21 20 19 28 28 C 1.46924 * 118.74000 * 306.09755 * 16 15 14 29 29 H 1.08999 * 109.46811 * 275.32360 * 1 2 3 30 30 H 1.08999 * 109.47395 * 35.32243 * 1 2 3 31 31 H 1.09003 * 109.47434 * 155.32929 * 1 2 3 32 32 H 0.97004 * 119.99503 * 179.97438 * 6 5 3 33 33 H 1.08994 * 109.46094 * 301.34419 * 13 11 2 34 34 H 1.09002 * 109.45719 * 61.29594 * 13 11 2 35 35 H 1.09001 * 109.49699 * 58.58852 * 14 13 11 36 36 H 1.08993 * 109.49815 * 178.65291 * 14 13 11 37 37 H 1.09005 * 109.73701 * 295.11719 * 15 14 13 38 38 H 1.09001 * 109.66510 * 174.54926 * 15 14 13 39 39 H 1.08005 * 126.44915 * 359.93858 * 20 19 17 40 40 H 1.09004 * 110.33398 * 136.13787 * 25 22 21 41 41 H 1.09005 * 110.32904 * 258.35897 * 25 22 21 42 42 H 1.09000 * 110.91657 * 92.33800 * 26 25 22 43 43 H 1.08998 * 110.92126 * 215.93788 * 26 25 22 44 44 H 1.08998 * 110.47972 * 43.47811 * 27 21 20 45 45 H 1.08999 * 110.22911 * 281.31111 * 27 21 20 46 46 H 1.09001 * 109.58796 * 173.64520 * 28 16 15 47 47 H 1.09001 * 109.58563 * 294.06790 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1652 1.2231 -0.3658 5 6 1.5385 2.3402 0.4701 6 7 0.4299 2.2576 1.1748 7 14 2.2895 4.0107 0.1028 8 1 2.3538 4.2120 -1.3671 9 1 1.4520 5.0747 0.7124 10 1 3.6599 4.0732 0.6713 11 6 2.1975 -1.2688 -0.0006 12 1 3.2693 -1.0701 0.0000 13 6 1.8252 -2.0740 1.2466 14 6 2.6145 -3.3850 1.2637 15 6 2.2450 -4.2147 0.0247 16 7 2.4681 -3.3921 -1.1720 17 6 3.2409 -3.8421 -2.1804 18 8 3.5463 -3.0966 -3.0924 19 6 3.7139 -5.2306 -2.1785 20 6 4.8850 -5.6925 -2.7377 21 6 4.9343 -7.0738 -2.5088 22 6 3.8216 -7.4223 -1.8220 23 7 3.0691 -6.3079 -1.6176 24 1 2.2180 -6.2781 -1.1532 25 6 3.8266 -8.9112 -1.5422 26 6 5.2893 -9.3549 -1.7609 27 6 5.8041 -8.2884 -2.7520 28 6 1.8277 -2.0721 -1.2514 29 1 -0.3633 0.0953 1.0232 30 1 -0.3634 0.8385 -0.5942 31 1 -0.3634 -0.9339 -0.4290 32 1 0.0031 3.0642 1.5037 33 1 2.0646 -1.4942 2.1380 34 1 0.7576 -2.2930 1.2320 35 1 3.6824 -3.1669 1.2533 36 1 2.3668 -3.9470 2.1641 37 1 1.1962 -4.5071 0.0769 38 1 2.8727 -5.1047 -0.0214 39 1 5.6239 -5.1017 -3.2588 40 1 3.5220 -9.1044 -0.5136 41 1 3.1658 -9.4293 -2.2373 42 1 5.8500 -9.3210 -0.8267 43 1 5.3322 -10.3504 -2.2025 44 1 6.8494 -8.0557 -2.5489 45 1 5.6866 -8.6368 -3.7781 46 1 2.1801 -1.5479 -2.1397 47 1 0.7456 -2.1933 -1.3012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027646637.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:55 Heat of formation + Delta-G solvation = 29.659927 kcal Electronic energy + Delta-G solvation = -27026.234587 eV Core-core repulsion = 23402.893769 eV Total energy + Delta-G solvation = -3623.340818 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.78950 -40.92352 -38.91959 -37.06480 -36.66737 -34.00848 -32.96090 -32.06603 -30.83364 -28.94831 -28.12658 -28.06890 -26.44540 -25.40396 -23.42662 -23.09777 -21.86166 -21.00759 -20.22379 -20.12920 -18.89458 -18.40433 -17.46019 -17.07926 -16.61502 -16.52156 -16.23955 -15.73458 -15.49013 -15.18546 -14.87307 -14.59800 -14.56017 -14.39395 -14.03749 -13.89949 -13.79082 -13.68760 -13.51349 -12.93198 -12.81586 -12.70279 -12.55462 -12.36540 -12.32985 -12.18516 -12.02253 -11.92642 -11.86745 -11.82125 -11.63074 -11.45750 -11.21403 -10.69630 -9.91732 -9.76404 -8.91477 -8.78389 -7.86992 -5.35530 0.42730 1.42269 1.45030 1.51659 1.59807 1.71264 1.85820 2.29673 2.47926 3.24831 3.41161 3.53876 3.67923 3.84935 3.92316 3.94261 3.97296 4.13899 4.25890 4.29426 4.31011 4.43280 4.48632 4.57449 4.62960 4.70105 4.74682 4.83851 4.89177 4.91740 4.95034 5.03154 5.07944 5.13680 5.20691 5.22526 5.29869 5.34818 5.43049 5.43528 5.47904 5.60663 5.68655 5.78125 5.95962 6.28080 6.29451 6.50280 6.96340 7.11260 7.82146 8.24553 9.14807 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028829 B = 0.002813 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.009282 B = 9949.813450 C =10409.990839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.608 5.608 3 C -0.270 4.270 4 H 0.059 0.941 5 C -0.045 4.045 6 N -0.931 5.931 7 Si 0.965 3.035 8 H -0.283 1.283 9 H -0.288 1.288 10 H -0.277 1.277 11 C 0.168 3.832 12 H 0.040 0.960 13 C -0.121 4.121 14 C -0.120 4.120 15 C 0.095 3.905 16 N -0.603 5.603 17 C 0.583 3.417 18 O -0.580 6.580 19 C -0.057 4.057 20 C -0.112 4.112 21 C -0.217 4.217 22 C 0.026 3.974 23 N -0.511 5.511 24 H 0.427 0.573 25 C -0.038 4.038 26 C -0.108 4.108 27 C -0.053 4.053 28 C 0.114 3.886 29 H 0.012 0.988 30 H 0.011 0.989 31 H 0.035 0.965 32 H 0.250 0.750 33 H 0.043 0.957 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.130 0.870 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.104 0.896 44 H 0.070 0.930 45 H 0.077 0.923 46 H 0.058 0.942 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.901 -29.054 -1.400 29.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.331 5.331 3 C -0.400 4.400 4 H 0.076 0.924 5 C -0.241 4.241 6 N -0.577 5.577 7 Si 0.793 3.207 8 H -0.209 1.209 9 H -0.214 1.214 10 H -0.203 1.203 11 C 0.060 3.940 12 H 0.058 0.942 13 C -0.160 4.160 14 C -0.159 4.159 15 C -0.027 4.027 16 N -0.335 5.335 17 C 0.374 3.626 18 O -0.460 6.460 19 C -0.169 4.169 20 C -0.139 4.139 21 C -0.222 4.222 22 C -0.092 4.092 23 N -0.110 5.110 24 H 0.269 0.731 25 C -0.076 4.076 26 C -0.145 4.145 27 C -0.090 4.090 28 C -0.011 4.011 29 H 0.030 0.970 30 H 0.029 0.971 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.125 0.875 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.148 0.852 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.099 0.901 43 H 0.123 0.877 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.076 0.924 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.766 -28.442 -1.714 28.889 hybrid contribution -0.158 2.209 -0.072 2.216 sum 4.608 -26.233 -1.786 26.694 Atomic orbital electron populations 1.20534 0.82400 0.95892 0.97962 1.44058 1.02177 1.00830 1.86005 1.19405 0.98402 0.87002 1.35219 0.92361 1.25685 0.98769 1.01494 0.98166 1.70198 1.21609 1.27773 1.38092 0.85383 0.77785 0.79798 0.77730 1.20920 1.21393 1.20274 1.20688 0.94707 0.85472 0.93150 0.94198 1.21927 1.00391 0.95913 0.97786 1.21925 0.99901 0.95576 0.98477 1.22395 1.03284 0.93899 0.83076 1.48136 1.48418 1.18330 1.18585 1.17534 0.77500 0.85991 0.81620 1.90809 1.58413 1.58232 1.38520 1.19701 0.98783 0.86692 1.11722 1.20802 0.96567 0.94525 1.02020 1.20671 1.00558 0.93706 1.07307 1.22021 0.92661 0.92207 1.02327 1.41662 1.20088 1.04911 1.44350 0.73113 1.20923 0.99354 0.83460 1.03896 1.22373 0.93531 0.98925 0.99693 1.20602 0.97931 0.90099 1.00392 1.22002 0.97079 0.82301 0.99688 0.97000 0.97064 0.94691 0.94073 0.93768 0.91646 0.92661 0.87469 0.88333 0.87962 0.85182 0.88623 0.88320 0.90102 0.87748 0.91142 0.90416 0.92368 0.90612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.71 8.04 127.77 1.03 9.74 16 2 N -0.61 -31.29 2.81 -702.32 -1.97 -33.26 16 3 C -0.27 -15.58 9.57 84.03 0.80 -14.78 16 4 H 0.06 3.39 7.83 -2.91 -0.02 3.36 16 5 C -0.05 -2.61 5.07 84.86 0.43 -2.18 16 6 N -0.93 -55.53 10.81 21.65 0.23 -55.29 16 7 Si 0.97 46.77 29.58 68.60 2.03 48.80 16 8 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 9 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 C 0.17 7.08 2.74 45.07 0.12 7.20 16 12 H 0.04 1.86 7.87 -2.39 -0.02 1.84 16 13 C -0.12 -4.11 5.14 30.62 0.16 -3.95 16 14 C -0.12 -2.89 6.10 30.82 0.19 -2.70 16 15 C 0.10 1.99 5.31 86.51 0.46 2.45 16 16 N -0.60 -18.60 2.97 -822.76 -2.44 -21.04 16 17 C 0.58 20.17 7.59 86.45 0.66 20.83 16 18 O -0.58 -25.57 16.44 -4.33 -0.07 -25.64 16 19 C -0.06 -1.56 6.16 40.34 0.25 -1.31 16 20 C -0.11 -3.06 10.77 22.61 0.24 -2.82 16 21 C -0.22 -4.45 6.89 -19.87 -0.14 -4.59 16 22 C 0.03 0.43 8.01 41.50 0.33 0.77 16 23 N -0.51 -9.48 4.69 -171.10 -0.80 -10.28 16 24 H 0.43 5.54 7.06 -92.71 -0.65 4.89 16 25 C -0.04 -0.30 6.79 30.58 0.21 -0.09 16 26 C -0.11 -0.73 7.12 31.56 0.22 -0.50 16 27 C -0.05 -0.69 6.78 30.54 0.21 -0.48 16 28 C 0.11 4.30 5.79 86.36 0.50 4.80 16 29 H 0.01 0.63 7.32 -2.39 -0.02 0.61 16 30 H 0.01 0.58 7.40 -2.39 -0.02 0.56 16 31 H 0.03 1.43 6.36 -2.39 -0.02 1.42 16 32 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 33 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.06 2.13 7.71 -2.39 -0.02 2.11 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 36 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.10 1.74 4.75 -2.39 -0.01 1.73 16 39 H 0.13 3.75 8.06 -2.91 -0.02 3.72 16 40 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 42 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 44 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16 46 H 0.06 2.61 7.00 -2.39 -0.02 2.59 16 47 H 0.08 2.68 6.50 -2.39 -0.02 2.67 16 Total: -1.00 -76.43 364.11 2.97 -73.46 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.32 Total: 10.88 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 5.67 Total: 12.38 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -4.98 Total: -119.88 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.07 Total: -25.64 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -76.43 2.97 -73.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027646637.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.115 kcal (2) G-P(sol) polarization free energy of solvation -76.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds