Wall clock time and date at job start Tue Mar 31 2020 11:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46509 * 120.00049 * 2 1 4 4 C 1.39709 * 120.00214 * 180.02562 * 2 1 3 5 5 C 1.39021 * 120.00446 * 354.69169 * 4 2 1 6 6 C 1.38199 * 120.22404 * 180.02562 * 5 4 2 7 7 C 1.38029 * 120.22620 * 359.97438 * 6 5 4 8 8 C 1.39579 * 120.00284 * 0.02562 * 7 6 5 9 9 C 1.47864 * 120.10566 * 179.97438 * 8 7 6 10 10 O 1.21552 * 119.99691 * 179.97438 * 9 8 7 11 11 N 1.34770 * 120.00107 * 0.02562 * 9 8 7 12 12 C 1.46508 * 119.99902 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47173 * 184.87724 * 12 11 9 14 14 H 1.09006 * 109.99302 * 53.46679 * 13 12 11 15 15 C 1.54325 * 109.88173 * 292.37353 * 13 12 11 16 16 C 1.55277 * 103.00159 * 218.46898 * 15 13 12 17 17 C 1.54911 * 101.53333 * 35.35790 * 16 15 13 18 18 N 1.47012 * 109.88211 * 174.56054 * 13 12 11 19 19 C 1.36945 * 125.64862 * 298.33875 * 18 13 12 20 20 H 1.07996 * 119.99831 * 351.11347 * 19 18 13 21 21 C 1.38817 * 119.99633 * 171.11386 * 19 18 13 22 22 N 1.31614 * 120.00271 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99544 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47220 * 90.00207 * 23 21 19 25 25 H 1.48501 * 109.47372 * 210.00230 * 23 21 19 26 26 H 1.48497 * 109.47439 * 330.00440 * 23 21 19 27 27 C 1.38638 * 120.00599 * 174.97712 * 4 2 1 28 28 H 1.09004 * 109.46698 * 185.08612 * 1 2 3 29 29 H 1.09004 * 109.46876 * 305.08421 * 1 2 3 30 30 H 1.08998 * 109.47026 * 65.08189 * 1 2 3 31 31 H 1.08997 * 109.46690 * 270.00303 * 3 2 1 32 32 H 1.08999 * 109.47043 * 30.00120 * 3 2 1 33 33 H 1.09000 * 109.46957 * 150.00359 * 3 2 1 34 34 H 1.07998 * 119.88642 * 0.02562 * 5 4 2 35 35 H 1.08000 * 119.89033 * 179.97438 * 6 5 4 36 36 H 1.07998 * 119.99714 * 180.02562 * 7 6 5 37 37 H 0.96996 * 120.00223 * 359.97438 * 11 9 8 38 38 H 1.09005 * 109.47010 * 64.87780 * 12 11 9 39 39 H 1.09003 * 109.46817 * 304.87877 * 12 11 9 40 40 H 1.09000 * 110.72099 * 336.74871 * 15 13 12 41 41 H 1.08993 * 110.71994 * 100.02498 * 15 13 12 42 42 H 1.08999 * 110.95893 * 277.33385 * 16 15 13 43 43 H 1.09004 * 111.10000 * 153.45033 * 16 15 13 44 44 H 1.08994 * 110.37066 * 204.23237 * 17 16 15 45 45 H 1.09001 * 110.36352 * 82.01756 * 17 16 15 46 46 H 0.96998 * 120.00054 * 179.97438 * 22 21 19 47 47 H 1.08002 * 120.11655 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1636 -1.2099 -0.0005 5 6 1.4731 -2.4114 0.1103 6 6 2.1596 -3.6108 0.1108 7 6 3.5354 -3.6240 0.0007 8 6 4.2382 -2.4232 -0.1111 9 6 5.7121 -2.4347 -0.2286 10 8 6.3221 -1.3879 -0.3263 11 7 6.3791 -3.6058 -0.2284 12 6 7.8394 -3.6171 -0.3453 13 6 8.3322 -5.0624 -0.4417 14 1 7.8115 -5.5808 -1.2469 15 6 8.0867 -5.7909 0.8965 16 6 9.3545 -6.6740 1.0512 17 6 10.4450 -5.7605 0.4379 18 7 9.7811 -5.0812 -0.6896 19 6 10.4101 -4.5551 -1.7865 20 1 9.8283 -4.2052 -2.6264 21 6 11.7953 -4.4717 -1.8186 22 7 12.5043 -4.8987 -0.7953 23 14 12.6532 -3.7548 -3.3151 24 1 12.8172 -2.2897 -3.1372 25 1 13.9879 -4.3870 -3.4708 26 1 11.8366 -4.0178 -4.5272 27 6 3.5460 -1.2122 -0.1057 28 1 -0.3633 -1.0237 0.0911 29 1 -0.3633 0.5907 0.8410 30 1 -0.3633 0.4330 -0.9320 31 1 2.3791 1.5834 -1.0277 32 1 1.6085 2.0284 0.5138 33 1 3.1500 1.1384 0.5138 34 1 0.3965 -2.4074 0.1963 35 1 1.6178 -4.5410 0.1976 36 1 4.0681 -4.5635 0.0011 37 1 5.8923 -4.4412 -0.1508 38 1 8.2779 -3.1415 0.5320 39 1 8.1364 -3.0715 -1.2410 40 1 8.0140 -5.0767 1.7167 41 1 7.1903 -6.4083 0.8407 42 1 9.2563 -7.5998 0.4844 43 1 9.5631 -6.8807 2.1009 44 1 11.2834 -6.3581 0.0802 45 1 10.7860 -5.0311 1.1725 46 1 13.4723 -4.8407 -0.8179 47 1 4.0849 -0.2798 -0.1868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028285410.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:26 Heat of formation + Delta-G solvation = 31.291695 kcal Electronic energy + Delta-G solvation = -26123.925718 eV Core-core repulsion = 22500.655659 eV Total energy + Delta-G solvation = -3623.270059 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.23088 -38.89478 -37.56551 -36.22694 -34.25990 -32.47244 -31.49398 -30.43432 -29.55559 -28.75794 -28.24258 -25.09538 -24.97986 -24.20726 -22.67512 -21.54417 -20.33730 -19.86061 -19.45963 -18.19549 -16.80623 -16.26054 -16.15584 -15.72043 -15.47000 -15.38598 -14.89593 -14.72871 -14.31627 -14.00165 -13.83679 -13.74836 -13.34415 -13.09837 -12.87491 -12.57654 -12.55641 -12.31147 -12.04849 -11.86985 -11.75152 -11.68290 -11.32789 -11.15423 -10.94601 -10.78140 -10.19712 -10.10883 -10.09749 -9.90439 -9.83924 -9.66701 -9.56981 -9.08485 -8.66531 -8.54420 -7.53616 -6.85940 -5.71810 -3.09142 0.87367 1.40149 2.82163 3.05440 3.41640 3.46759 3.48417 3.51197 3.93152 4.49212 4.53932 4.66637 4.78938 4.98260 5.01371 5.03334 5.10322 5.27344 5.29960 5.35344 5.40670 5.42308 5.46904 5.49185 5.54240 5.64496 5.75546 5.83127 6.01284 6.06770 6.15524 6.25878 6.28691 6.34272 6.48067 6.53503 6.58090 6.64754 6.73451 6.83370 6.95417 7.07867 7.21634 7.56845 7.60803 7.83073 7.83228 8.29087 8.50991 9.20157 9.80696 10.45886 11.37754 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019448 B = 0.002684 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.418631 B =10427.761998 C =11429.650381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.640 5.640 3 C 0.092 3.908 4 C 0.204 3.796 5 C -0.182 4.182 6 C -0.079 4.079 7 C -0.145 4.145 8 C -0.079 4.079 9 C 0.549 3.451 10 O -0.540 6.540 11 N -0.716 5.716 12 C 0.108 3.892 13 C 0.152 3.848 14 H 0.039 0.961 15 C -0.128 4.128 16 C -0.148 4.148 17 C 0.166 3.834 18 N -0.590 5.590 19 C -0.230 4.230 20 H 0.077 0.923 21 C -0.005 4.005 22 N -0.919 5.919 23 Si 0.912 3.088 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.281 1.281 27 C -0.139 4.139 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.396 0.604 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.085 0.915 45 H 0.020 0.980 46 H 0.253 0.747 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.884 3.573 4.478 25.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.353 5.353 3 C -0.051 4.051 4 C 0.103 3.897 5 C -0.204 4.204 6 C -0.098 4.098 7 C -0.166 4.166 8 C -0.083 4.083 9 C 0.335 3.665 10 O -0.418 6.418 11 N -0.367 5.367 12 C -0.017 4.017 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.166 4.166 16 C -0.187 4.187 17 C 0.042 3.958 18 N -0.314 5.314 19 C -0.358 4.358 20 H 0.095 0.905 21 C -0.201 4.201 22 N -0.565 5.565 23 Si 0.742 3.258 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.206 1.206 27 C -0.162 4.162 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.230 0.770 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.103 0.897 45 H 0.038 0.962 46 H 0.063 0.937 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -24.236 4.519 4.321 25.029 hybrid contribution 0.203 0.164 -0.691 0.739 sum -24.032 4.684 3.630 24.752 Atomic orbital electron populations 1.21684 0.79583 1.02965 1.00982 1.46281 1.04911 1.03119 1.80966 1.21650 0.97358 0.84674 1.01453 1.17714 0.90935 0.85964 0.95049 1.20850 0.99782 0.91196 1.08607 1.20806 0.93818 0.97357 0.97776 1.21098 0.94475 0.96970 1.04051 1.19817 0.93030 0.93765 1.01672 1.18319 0.86830 0.84197 0.77153 1.90767 1.69527 1.31801 1.49720 1.46059 1.09145 1.07924 1.73545 1.22280 0.76400 1.00638 1.02374 1.21120 0.88024 0.91659 0.94880 0.94374 1.22655 0.97909 0.98612 0.97414 1.23028 0.97104 0.98737 0.99802 1.21606 0.93160 0.92835 0.88247 1.44512 0.99120 1.66376 1.21372 1.19031 0.89437 1.34095 0.93234 0.90487 1.24835 0.96324 1.01042 0.97939 1.69920 1.05318 1.51471 1.29838 0.86117 0.78924 0.78844 0.81883 1.21453 1.21667 1.20610 1.20768 0.91772 0.98487 1.05201 0.90416 0.92664 0.93036 0.93230 0.91552 0.90986 0.85668 0.85540 0.85808 0.76962 0.91919 0.90992 0.91801 0.92360 0.92284 0.92341 0.89660 0.96155 0.93661 0.84685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 10.62 59.85 0.64 1.19 16 2 N -0.64 -5.84 3.41 -187.58 -0.64 -6.48 16 3 C 0.09 0.73 10.11 59.85 0.61 1.33 16 4 C 0.20 2.26 6.53 -83.83 -0.55 1.71 16 5 C -0.18 -1.72 9.31 -39.31 -0.37 -2.08 16 6 C -0.08 -0.73 10.02 -39.67 -0.40 -1.13 16 7 C -0.15 -1.59 9.54 -39.16 -0.37 -1.97 16 8 C -0.08 -1.10 5.87 -104.99 -0.62 -1.71 16 9 C 0.55 9.39 7.77 -12.32 -0.10 9.29 16 10 O -0.54 -11.38 16.34 5.32 0.09 -11.29 16 11 N -0.72 -11.38 5.37 -61.24 -0.33 -11.71 16 12 C 0.11 2.13 5.11 -4.04 -0.02 2.11 16 13 C 0.15 3.02 3.21 -66.96 -0.22 2.81 16 14 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 15 C -0.13 -2.13 6.12 -24.83 -0.15 -2.28 16 16 C -0.15 -2.72 7.10 -24.52 -0.17 -2.90 16 17 C 0.17 3.99 5.54 -2.53 -0.01 3.97 16 18 N -0.59 -14.75 3.13 -162.57 -0.51 -15.26 16 19 C -0.23 -6.36 9.73 -15.05 -0.15 -6.50 16 20 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 21 C 0.00 -0.14 5.48 -17.43 -0.10 -0.23 16 22 N -0.92 -26.85 10.35 55.49 0.57 -26.28 16 23 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 C -0.14 -1.84 8.71 -38.97 -0.34 -2.18 16 28 H 0.08 0.40 5.30 -51.93 -0.28 0.13 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 33 H 0.07 0.63 6.42 -51.93 -0.33 0.30 16 34 H 0.13 0.87 5.72 -52.49 -0.30 0.57 16 35 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 36 H 0.12 1.12 6.40 -52.49 -0.34 0.79 16 37 H 0.40 5.03 6.31 -40.82 -0.26 4.77 16 38 H 0.06 1.35 8.01 -51.93 -0.42 0.93 16 39 H 0.07 1.63 7.83 -51.93 -0.41 1.22 16 40 H 0.06 1.05 7.76 -51.93 -0.40 0.65 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.09 2.29 6.50 -51.93 -0.34 1.95 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 47 H 0.14 1.87 5.87 -52.49 -0.31 1.57 16 LS Contribution 373.78 15.07 5.63 5.63 Total: -1.00 -33.29 373.78 -9.66 -42.95 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -7.14 Total: 3.65 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -2.31 Total: 1.43 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: -0.90 Total: -59.73 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.29 -9.66 -42.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028285410.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.246 kcal (2) G-P(sol) polarization free energy of solvation -33.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds