Wall clock time and date at job start Tue Mar 31 2020 11:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46509 * 120.00049 * 2 1 4 4 C 1.39709 * 120.00214 * 180.02562 * 2 1 3 5 5 C 1.39021 * 120.00446 * 354.69169 * 4 2 1 6 6 C 1.38199 * 120.22404 * 180.02562 * 5 4 2 7 7 C 1.38029 * 120.22620 * 359.97438 * 6 5 4 8 8 C 1.39579 * 120.00284 * 0.02562 * 7 6 5 9 9 C 1.47864 * 120.10566 * 179.97438 * 8 7 6 10 10 O 1.21552 * 119.99691 * 179.97438 * 9 8 7 11 11 N 1.34770 * 120.00107 * 0.02562 * 9 8 7 12 12 C 1.46508 * 119.99902 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47173 * 184.87724 * 12 11 9 14 14 H 1.09006 * 109.99302 * 53.46679 * 13 12 11 15 15 C 1.54325 * 109.88173 * 292.37353 * 13 12 11 16 16 C 1.55277 * 103.00159 * 218.46898 * 15 13 12 17 17 C 1.54911 * 101.53333 * 35.35790 * 16 15 13 18 18 N 1.47012 * 109.88211 * 174.56054 * 13 12 11 19 19 C 1.36945 * 125.64862 * 298.33875 * 18 13 12 20 20 H 1.07996 * 119.99831 * 351.11347 * 19 18 13 21 21 C 1.38817 * 119.99633 * 171.11386 * 19 18 13 22 22 N 1.31614 * 120.00271 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99544 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47220 * 90.00207 * 23 21 19 25 25 H 1.48501 * 109.47372 * 210.00230 * 23 21 19 26 26 H 1.48497 * 109.47439 * 330.00440 * 23 21 19 27 27 C 1.38638 * 120.00599 * 174.97712 * 4 2 1 28 28 H 1.09004 * 109.46698 * 185.08612 * 1 2 3 29 29 H 1.09004 * 109.46876 * 305.08421 * 1 2 3 30 30 H 1.08998 * 109.47026 * 65.08189 * 1 2 3 31 31 H 1.08997 * 109.46690 * 270.00303 * 3 2 1 32 32 H 1.08999 * 109.47043 * 30.00120 * 3 2 1 33 33 H 1.09000 * 109.46957 * 150.00359 * 3 2 1 34 34 H 1.07998 * 119.88642 * 0.02562 * 5 4 2 35 35 H 1.08000 * 119.89033 * 179.97438 * 6 5 4 36 36 H 1.07998 * 119.99714 * 180.02562 * 7 6 5 37 37 H 0.96996 * 120.00223 * 359.97438 * 11 9 8 38 38 H 1.09005 * 109.47010 * 64.87780 * 12 11 9 39 39 H 1.09003 * 109.46817 * 304.87877 * 12 11 9 40 40 H 1.09000 * 110.72099 * 336.74871 * 15 13 12 41 41 H 1.08993 * 110.71994 * 100.02498 * 15 13 12 42 42 H 1.08999 * 110.95893 * 277.33385 * 16 15 13 43 43 H 1.09004 * 111.10000 * 153.45033 * 16 15 13 44 44 H 1.08994 * 110.37066 * 204.23237 * 17 16 15 45 45 H 1.09001 * 110.36352 * 82.01756 * 17 16 15 46 46 H 0.96998 * 120.00054 * 179.97438 * 22 21 19 47 47 H 1.08002 * 120.11655 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1636 -1.2099 -0.0005 5 6 1.4731 -2.4114 0.1103 6 6 2.1596 -3.6108 0.1108 7 6 3.5354 -3.6240 0.0007 8 6 4.2382 -2.4232 -0.1111 9 6 5.7121 -2.4347 -0.2286 10 8 6.3221 -1.3879 -0.3263 11 7 6.3791 -3.6058 -0.2284 12 6 7.8394 -3.6171 -0.3453 13 6 8.3322 -5.0624 -0.4417 14 1 7.8115 -5.5808 -1.2469 15 6 8.0867 -5.7909 0.8965 16 6 9.3545 -6.6740 1.0512 17 6 10.4450 -5.7605 0.4379 18 7 9.7811 -5.0812 -0.6896 19 6 10.4101 -4.5551 -1.7865 20 1 9.8283 -4.2052 -2.6264 21 6 11.7953 -4.4717 -1.8186 22 7 12.5043 -4.8987 -0.7953 23 14 12.6532 -3.7548 -3.3151 24 1 12.8172 -2.2897 -3.1372 25 1 13.9879 -4.3870 -3.4708 26 1 11.8366 -4.0178 -4.5272 27 6 3.5460 -1.2122 -0.1057 28 1 -0.3633 -1.0237 0.0911 29 1 -0.3633 0.5907 0.8410 30 1 -0.3633 0.4330 -0.9320 31 1 2.3791 1.5834 -1.0277 32 1 1.6085 2.0284 0.5138 33 1 3.1500 1.1384 0.5138 34 1 0.3965 -2.4074 0.1963 35 1 1.6178 -4.5410 0.1976 36 1 4.0681 -4.5635 0.0011 37 1 5.8923 -4.4412 -0.1508 38 1 8.2779 -3.1415 0.5320 39 1 8.1364 -3.0715 -1.2410 40 1 8.0140 -5.0767 1.7167 41 1 7.1903 -6.4083 0.8407 42 1 9.2563 -7.5998 0.4844 43 1 9.5631 -6.8807 2.1009 44 1 11.2834 -6.3581 0.0802 45 1 10.7860 -5.0311 1.1725 46 1 13.4723 -4.8407 -0.8179 47 1 4.0849 -0.2798 -0.1868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028285410.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:26 Heat of formation + Delta-G solvation = 9.841807 kcal Electronic energy + Delta-G solvation = -26124.855855 eV Core-core repulsion = 22500.655659 eV Total energy + Delta-G solvation = -3624.200196 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.32586 -40.03938 -39.18106 -37.00719 -35.82775 -34.41581 -32.42790 -31.52821 -31.12902 -30.10273 -29.07207 -26.78214 -25.89499 -25.72193 -23.89002 -22.39451 -21.99291 -21.26660 -20.92509 -19.27467 -18.61242 -17.52538 -17.27367 -16.86921 -16.48216 -16.36005 -16.28966 -15.94407 -15.83720 -15.64504 -14.81075 -14.73813 -14.62873 -14.53022 -13.97007 -13.63360 -13.54037 -13.41078 -13.33134 -13.22187 -13.04266 -12.92898 -12.87860 -12.72283 -12.40791 -12.02565 -11.96266 -11.84179 -11.68403 -11.42964 -11.40262 -11.04920 -10.86421 -10.71373 -10.20900 -9.86247 -8.90231 -8.25959 -7.86054 -5.24482 -0.07943 0.60106 1.42879 1.45665 1.53215 1.89713 2.03507 2.28288 2.49524 2.97712 3.30195 3.61384 3.78189 3.94466 3.95845 3.98716 4.04035 4.22811 4.26325 4.32432 4.42577 4.47523 4.49868 4.54008 4.56602 4.70077 4.73103 4.75874 4.84982 4.92438 4.94844 4.99719 5.03021 5.14741 5.20531 5.24673 5.32800 5.44088 5.47933 5.54011 5.55151 5.69012 5.80384 5.81616 6.24475 6.29013 6.48955 6.56080 7.09073 7.20287 7.76328 8.40038 9.21956 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019448 B = 0.002684 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.418631 B =10427.761998 C =11429.650381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.646 5.646 3 C 0.089 3.911 4 C 0.197 3.803 5 C -0.173 4.173 6 C -0.071 4.071 7 C -0.144 4.144 8 C -0.102 4.102 9 C 0.546 3.454 10 O -0.593 6.593 11 N -0.698 5.698 12 C 0.128 3.872 13 C 0.148 3.852 14 H 0.052 0.948 15 C -0.114 4.114 16 C -0.132 4.132 17 C 0.166 3.834 18 N -0.611 5.611 19 C -0.237 4.237 20 H 0.075 0.925 21 C -0.062 4.062 22 N -0.946 5.946 23 Si 0.972 3.028 24 H -0.292 1.292 25 H -0.289 1.289 26 H -0.269 1.269 27 C -0.164 4.164 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.157 0.843 35 H 0.166 0.834 36 H 0.145 0.855 37 H 0.415 0.585 38 H 0.038 0.962 39 H 0.033 0.967 40 H 0.066 0.934 41 H 0.108 0.892 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.050 0.950 45 H -0.013 1.013 46 H 0.247 0.753 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.142 1.782 4.846 29.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.358 5.358 3 C -0.054 4.054 4 C 0.095 3.905 5 C -0.195 4.195 6 C -0.089 4.089 7 C -0.164 4.164 8 C -0.105 4.105 9 C 0.335 3.665 10 O -0.475 6.475 11 N -0.351 5.351 12 C 0.001 3.999 13 C 0.041 3.959 14 H 0.070 0.930 15 C -0.152 4.152 16 C -0.171 4.171 17 C 0.041 3.959 18 N -0.336 5.336 19 C -0.366 4.366 20 H 0.093 0.907 21 C -0.256 4.256 22 N -0.595 5.595 23 Si 0.800 3.200 24 H -0.219 1.219 25 H -0.216 1.216 26 H -0.193 1.193 27 C -0.188 4.188 28 H 0.109 0.891 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.174 0.826 35 H 0.183 0.817 36 H 0.163 0.837 37 H 0.254 0.746 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.085 0.915 41 H 0.126 0.874 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.068 0.932 45 H 0.005 0.995 46 H 0.057 0.943 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -28.572 2.702 4.692 29.081 hybrid contribution 1.382 0.780 -0.797 1.776 sum -27.191 3.482 3.895 27.688 Atomic orbital electron populations 1.21899 0.77517 1.04198 1.02018 1.46544 1.06226 1.02665 1.80335 1.21687 0.97186 0.85168 1.01378 1.17871 0.90174 0.87580 0.94901 1.21288 1.01370 0.90425 1.06439 1.21249 0.93046 0.98838 0.95779 1.21352 0.95533 0.96337 1.03197 1.19587 0.90599 0.95475 1.04863 1.18962 0.88474 0.83414 0.75678 1.90733 1.70951 1.33652 1.52140 1.45738 1.07377 1.08824 1.73143 1.21755 0.78729 0.99992 0.99393 1.21340 0.85303 0.91772 0.97504 0.93031 1.22656 0.99028 0.98451 0.95059 1.22890 0.95318 0.97951 1.00920 1.21434 0.94399 0.92579 0.87480 1.44778 1.01480 1.66432 1.20889 1.19319 0.89872 1.33249 0.94204 0.90669 1.25605 0.97142 1.02154 1.00651 1.70133 1.04966 1.52870 1.31494 0.85177 0.77867 0.77538 0.79379 1.21941 1.21567 1.19343 1.20711 0.93148 0.97634 1.07306 0.89121 0.91275 0.92270 0.93552 0.89205 0.92701 0.82567 0.81694 0.83703 0.74595 0.94406 0.94811 0.91543 0.87383 0.91076 0.89807 0.93180 0.99515 0.94315 0.86965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 10.62 127.77 1.36 2.13 16 2 N -0.65 -10.75 3.41 -747.38 -2.55 -13.30 16 3 C 0.09 1.40 10.11 127.77 1.29 2.69 16 4 C 0.20 4.05 6.53 38.17 0.25 4.30 16 5 C -0.17 -2.59 9.31 22.45 0.21 -2.38 16 6 C -0.07 -0.99 10.02 22.21 0.22 -0.76 16 7 C -0.14 -2.71 9.54 22.54 0.22 -2.50 16 8 C -0.10 -2.78 5.87 -20.10 -0.12 -2.90 16 9 C 0.55 19.23 7.77 86.79 0.67 19.90 16 10 O -0.59 -26.76 16.34 -3.88 -0.06 -26.82 16 11 N -0.70 -21.93 5.37 -465.93 -2.50 -24.43 16 12 C 0.13 5.18 5.11 86.38 0.44 5.62 16 13 C 0.15 5.79 3.21 45.34 0.15 5.94 16 14 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 15 C -0.11 -3.46 6.12 31.83 0.19 -3.26 16 16 C -0.13 -4.58 7.10 32.03 0.23 -4.35 16 17 C 0.17 8.17 5.54 86.86 0.48 8.65 16 18 N -0.61 -31.28 3.13 -668.26 -2.09 -33.37 16 19 C -0.24 -13.55 9.73 84.03 0.82 -12.73 16 20 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 21 C -0.06 -3.63 5.48 84.86 0.47 -3.16 16 22 N -0.95 -57.71 10.35 21.65 0.22 -57.49 16 23 Si 0.97 47.42 29.55 68.60 2.03 49.45 16 24 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 25 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 27 C -0.16 -4.45 8.71 22.67 0.20 -4.25 16 28 H 0.09 0.56 5.30 -2.39 -0.01 0.55 16 29 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.09 0.95 8.07 -2.39 -0.02 0.93 16 33 H 0.05 1.04 6.42 -2.39 -0.02 1.03 16 34 H 0.16 1.34 5.72 -2.91 -0.02 1.33 16 35 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 36 H 0.15 2.01 6.40 -2.91 -0.02 1.99 16 37 H 0.42 9.49 6.31 -92.71 -0.58 8.91 16 38 H 0.04 1.71 8.01 -2.38 -0.02 1.69 16 39 H 0.03 1.61 7.83 -2.39 -0.02 1.59 16 40 H 0.07 2.01 7.76 -2.39 -0.02 1.99 16 41 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 44 H 0.05 2.79 6.50 -2.39 -0.02 2.78 16 45 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 46 H 0.25 14.69 8.31 -92.71 -0.77 13.91 16 47 H 0.11 3.44 5.87 -2.91 -0.02 3.42 16 Total: -1.00 -79.00 373.78 2.52 -76.48 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.39 Total: 16.54 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 7.07 Total: 12.93 kcal Atomic # 7 Polarization: -121.67 SS G_CDS: -6.91 Total: -128.58 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.06 Total: -26.82 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -79.00 2.52 -76.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028285410.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.324 kcal (2) G-P(sol) polarization free energy of solvation -78.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds