Wall clock time and date at job start Tue Mar 31 2020 11:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46502 * 119.99536 * 2 1 4 4 C 1.39705 * 120.00391 * 179.97438 * 2 1 3 5 5 C 1.39017 * 120.00551 * 180.02562 * 4 2 1 6 6 C 1.38205 * 120.22171 * 179.97438 * 5 4 2 7 7 C 1.38021 * 120.22570 * 359.97438 * 6 5 4 8 8 C 1.39574 * 120.00551 * 359.97438 * 7 6 5 9 9 C 1.47869 * 120.11157 * 179.97438 * 8 7 6 10 10 O 1.21547 * 120.00357 * 180.02562 * 9 8 7 11 11 N 1.34780 * 119.99720 * 359.97438 * 9 8 7 12 12 C 1.46493 * 120.00063 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47477 * 174.10186 * 12 11 9 14 14 H 1.09000 * 109.86771 * 56.78695 * 13 12 11 15 15 C 1.54314 * 109.88267 * 177.79875 * 13 12 11 16 16 C 1.55157 * 102.94051 * 141.61366 * 15 13 12 17 17 C 1.54915 * 101.58200 * 324.49825 * 16 15 13 18 18 N 1.47018 * 109.88093 * 295.61190 * 13 12 11 19 19 C 1.36936 * 125.64851 * 61.62209 * 18 13 12 20 20 H 1.08003 * 120.00139 * 324.03527 * 19 18 13 21 21 C 1.38811 * 120.00406 * 144.04122 * 19 18 13 22 22 N 1.31618 * 120.00498 * 162.24996 * 21 19 18 23 23 Si 1.86810 * 119.99669 * 342.25173 * 21 19 18 24 24 H 1.48495 * 109.47043 * 94.11976 * 23 21 19 25 25 H 1.48500 * 109.47045 * 214.12193 * 23 21 19 26 26 H 1.48501 * 109.46981 * 334.11803 * 23 21 19 27 27 C 1.38640 * 120.00048 * 0.02562 * 4 2 1 28 28 H 1.08997 * 109.47556 * 239.99659 * 1 2 3 29 29 H 1.08994 * 109.47397 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46466 * 120.00278 * 1 2 3 31 31 H 1.09001 * 109.47433 * 269.99478 * 3 2 1 32 32 H 1.09007 * 109.47425 * 29.99999 * 3 2 1 33 33 H 1.09006 * 109.46715 * 149.99640 * 3 2 1 34 34 H 1.08003 * 119.88756 * 359.97438 * 5 4 2 35 35 H 1.07996 * 119.88915 * 180.28222 * 6 5 4 36 36 H 1.07998 * 119.99762 * 180.02562 * 7 6 5 37 37 H 0.96998 * 120.00046 * 0.02562 * 11 9 8 38 38 H 1.09004 * 109.47332 * 294.10459 * 12 11 9 39 39 H 1.09002 * 109.47212 * 54.10310 * 12 11 9 40 40 H 1.09000 * 110.72532 * 259.97517 * 15 13 12 41 41 H 1.08995 * 110.72685 * 23.25140 * 15 13 12 42 42 H 1.09000 * 111.00947 * 82.57418 * 16 15 13 43 43 H 1.09003 * 111.00728 * 206.42316 * 16 15 13 44 44 H 1.08999 * 110.36827 * 155.84449 * 17 16 15 45 45 H 1.08998 * 110.36485 * 278.06303 * 17 16 15 46 46 H 0.97000 * 120.00094 * 180.02562 * 22 21 19 47 47 H 1.07997 * 120.11612 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1636 -1.2098 0.0005 5 6 3.5538 -1.2099 0.0011 6 6 4.2494 -2.4041 0.0021 7 6 3.5686 -3.6047 0.0032 8 6 2.1729 -3.6157 0.0038 9 6 1.4412 -4.9007 0.0044 10 8 0.2257 -4.9079 0.0044 11 7 2.1220 -6.0638 0.0038 12 6 1.3972 -7.3369 0.0050 13 6 2.3915 -8.4902 -0.1442 14 1 3.1336 -8.4449 0.6530 15 6 1.6433 -9.8386 -0.0887 16 6 2.3897 -10.6939 -1.1464 17 6 2.7339 -9.6308 -2.2194 18 7 3.0547 -8.4123 -1.4540 19 6 3.8399 -7.3791 -1.8908 20 1 3.5978 -6.3631 -1.6158 21 6 4.9472 -7.6373 -2.6871 22 7 5.4935 -6.6674 -3.3893 23 14 5.6619 -9.3616 -2.7622 24 1 5.0799 -10.0887 -3.9188 25 1 7.1363 -9.2799 -2.9198 26 1 5.3377 -10.0869 -1.5075 27 6 1.4705 -2.4105 0.0005 28 1 -0.3634 -0.5139 0.8899 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3632 -0.5139 -0.8900 31 1 2.3792 1.5835 -1.0277 32 1 1.6083 2.0285 0.5139 33 1 3.1499 1.1385 0.5139 34 1 4.0920 -0.2735 0.0007 35 1 5.3293 -2.3979 0.0072 36 1 4.1159 -4.5358 0.0045 37 1 3.0920 -6.0581 0.0034 38 1 0.8538 -7.4448 0.9437 39 1 0.6928 -7.3547 -0.8267 40 1 1.7299 -10.2874 0.9009 41 1 0.5968 -9.7108 -0.3650 42 1 3.2950 -11.1323 -0.7264 43 1 1.7376 -11.4654 -1.5560 44 1 3.5963 -9.9486 -2.8054 45 1 1.8769 -9.4574 -2.8701 46 1 6.2671 -6.8480 -3.9460 47 1 0.3905 -2.4128 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028285411.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:30 Heat of formation + Delta-G solvation = 34.755336 kcal Electronic energy + Delta-G solvation = -26912.808028 eV Core-core repulsion = 23289.688164 eV Total energy + Delta-G solvation = -3623.119865 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.90450 -38.72076 -37.74458 -35.92651 -33.98786 -32.65745 -31.14769 -30.18103 -29.97671 -29.06936 -28.20885 -25.14677 -24.69700 -24.02862 -22.45198 -21.22202 -20.79189 -19.78537 -19.30154 -17.95695 -16.79584 -16.22436 -15.93797 -15.61061 -15.34207 -15.12234 -15.02266 -14.72178 -14.40020 -13.71676 -13.55941 -13.43176 -13.23417 -13.04191 -12.75374 -12.54474 -12.40962 -12.31207 -12.18286 -12.07427 -11.93904 -11.36989 -11.30976 -11.26227 -10.91091 -10.86032 -10.69284 -10.46622 -10.18743 -9.85219 -9.73405 -9.56356 -9.36456 -8.72010 -8.59619 -8.29096 -7.22200 -6.84951 -6.02497 -3.47666 1.24047 1.80324 3.09090 3.29673 3.37329 3.43400 3.48517 3.82634 4.30228 4.48982 4.86461 4.91297 4.95252 5.10579 5.13949 5.19164 5.23791 5.32619 5.39677 5.45402 5.50717 5.53419 5.55886 5.58291 5.65488 5.75030 5.81304 5.89528 5.96265 6.09752 6.12536 6.14174 6.27232 6.33074 6.37896 6.41434 6.58732 6.70589 6.77342 6.85379 6.87350 6.91924 7.11626 7.24902 7.52997 7.86018 8.18230 8.29448 8.76425 8.82174 9.61616 10.20808 11.11361 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017052 B = 0.003629 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.684686 B = 7712.748671 C = 8958.046546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.643 5.643 3 C 0.096 3.904 4 C 0.196 3.804 5 C -0.176 4.176 6 C -0.078 4.078 7 C -0.128 4.128 8 C -0.083 4.083 9 C 0.553 3.447 10 O -0.559 6.559 11 N -0.701 5.701 12 C 0.116 3.884 13 C 0.142 3.858 14 H 0.048 0.952 15 C -0.121 4.121 16 C -0.136 4.136 17 C 0.118 3.882 18 N -0.601 5.601 19 C -0.259 4.259 20 H 0.092 0.908 21 C 0.037 3.963 22 N -0.899 5.899 23 Si 0.888 3.112 24 H -0.288 1.288 25 H -0.304 1.304 26 H -0.268 1.268 27 C -0.137 4.137 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.412 0.588 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.041 0.959 45 H 0.031 0.969 46 H 0.264 0.736 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.492 8.621 8.984 13.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.357 5.357 3 C -0.047 4.047 4 C 0.096 3.904 5 C -0.199 4.199 6 C -0.097 4.097 7 C -0.149 4.149 8 C -0.086 4.086 9 C 0.340 3.660 10 O -0.440 6.440 11 N -0.353 5.353 12 C -0.010 4.010 13 C 0.035 3.965 14 H 0.066 0.934 15 C -0.159 4.159 16 C -0.174 4.174 17 C -0.007 4.007 18 N -0.327 5.327 19 C -0.386 4.386 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.540 5.540 23 Si 0.720 3.280 24 H -0.216 1.216 25 H -0.232 1.232 26 H -0.194 1.194 27 C -0.160 4.160 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.253 0.747 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.049 0.951 46 H 0.074 0.926 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.234 8.880 8.839 13.995 hybrid contribution 0.997 -0.886 -0.417 1.397 sum -5.237 7.995 8.422 12.738 Atomic orbital electron populations 1.21581 0.79548 1.01982 1.01530 1.46219 1.04861 1.02926 1.81644 1.21613 0.97221 0.84881 1.00981 1.17630 0.91128 0.85462 0.96197 1.20797 0.91917 0.98698 1.08468 1.20834 0.99830 0.91477 0.97554 1.21248 0.92937 0.98933 1.01739 1.19739 0.93628 0.92977 1.02296 1.18282 0.87016 0.84093 0.76577 1.90681 1.13678 1.87982 1.51656 1.46128 1.11538 1.05105 1.72557 1.21939 0.95453 0.83219 1.00361 1.21286 0.93089 0.91818 0.90273 0.93407 1.22482 0.99249 0.95246 0.98952 1.22782 0.99826 0.97503 0.97333 1.21886 0.97817 0.87283 0.93696 1.44675 1.57198 1.20378 1.10449 1.18686 1.02967 0.86678 1.30291 0.89102 1.25430 0.96179 0.96929 0.97933 1.69817 1.23874 1.32332 1.27960 0.86727 0.77059 0.85997 0.78243 1.21602 1.23230 1.19357 1.20640 1.00106 0.89641 1.05617 0.92805 0.91161 0.92694 0.93607 0.91839 0.91405 0.86024 0.85498 0.85209 0.74743 0.92840 0.91622 0.91403 0.91241 0.91610 0.91565 0.94113 0.95120 0.92606 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.96 9.40 59.85 0.56 1.52 16 2 N -0.64 -7.56 3.41 -187.58 -0.64 -8.20 16 3 C 0.10 0.82 10.16 59.85 0.61 1.43 16 4 C 0.20 2.84 6.55 -83.83 -0.55 2.29 16 5 C -0.18 -2.40 9.20 -39.31 -0.36 -2.76 16 6 C -0.08 -1.15 10.02 -39.67 -0.40 -1.55 16 7 C -0.13 -2.17 9.54 -39.16 -0.37 -2.55 16 8 C -0.08 -1.50 5.87 -104.99 -0.62 -2.12 16 9 C 0.55 11.18 7.77 -12.32 -0.10 11.08 16 10 O -0.56 -12.51 16.33 5.32 0.09 -12.42 16 11 N -0.70 -13.68 4.31 -61.24 -0.26 -13.95 16 12 C 0.12 2.16 5.15 -4.04 -0.02 2.14 16 13 C 0.14 2.66 3.30 -66.96 -0.22 2.44 16 14 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 15 C -0.12 -1.85 6.48 -24.90 -0.16 -2.01 16 16 C -0.14 -2.26 7.09 -24.58 -0.17 -2.44 16 17 C 0.12 2.48 6.24 -2.53 -0.02 2.46 16 18 N -0.60 -13.66 2.67 -162.58 -0.43 -14.10 16 19 C -0.26 -6.78 9.50 -15.06 -0.14 -6.93 16 20 H 0.09 2.46 5.54 -52.48 -0.29 2.17 16 21 C 0.04 1.01 5.45 -17.43 -0.10 0.91 16 22 N -0.90 -26.37 13.97 55.49 0.78 -25.59 16 23 Si 0.89 21.85 24.83 -169.99 -4.22 17.63 16 24 H -0.29 -7.06 6.81 56.52 0.39 -6.67 16 25 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 26 H -0.27 -6.39 7.06 56.52 0.40 -5.99 16 27 C -0.14 -2.28 8.85 -38.97 -0.35 -2.62 16 28 H 0.05 0.54 7.95 -51.93 -0.41 0.12 16 29 H 0.07 0.51 7.79 -51.93 -0.40 0.10 16 30 H 0.05 0.58 7.95 -51.93 -0.41 0.17 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.41 7.92 -51.93 -0.41 0.00 16 33 H 0.07 0.54 6.19 -51.93 -0.32 0.22 16 34 H 0.12 1.33 6.12 -52.48 -0.32 1.01 16 35 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 36 H 0.13 2.25 6.40 -52.49 -0.34 1.91 16 37 H 0.41 8.10 4.35 -40.82 -0.18 7.92 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.35 8.12 -51.93 -0.42 0.92 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.99 7.85 -51.93 -0.41 0.59 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.04 0.93 3.22 -51.93 -0.17 0.77 16 45 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.13 2.16 6.32 -52.49 -0.33 1.83 16 LS Contribution 366.15 15.07 5.52 5.52 Total: -1.00 -32.40 366.15 -8.53 -40.93 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -6.95 Total: 8.88 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -2.40 Total: 1.30 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: -0.56 Total: -61.83 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.09 Total: -12.42 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.22 Total: 17.63 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.40 -8.53 -40.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028285411.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.684 kcal (2) G-P(sol) polarization free energy of solvation -32.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds