Wall clock time and date at job start Tue Mar 31 2020 11:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46502 * 119.99536 * 2 1 4 4 C 1.39705 * 120.00391 * 179.97438 * 2 1 3 5 5 C 1.39017 * 120.00551 * 180.02562 * 4 2 1 6 6 C 1.38205 * 120.22171 * 179.97438 * 5 4 2 7 7 C 1.38021 * 120.22570 * 359.97438 * 6 5 4 8 8 C 1.39574 * 120.00551 * 359.97438 * 7 6 5 9 9 C 1.47869 * 120.11157 * 179.97438 * 8 7 6 10 10 O 1.21547 * 120.00357 * 180.02562 * 9 8 7 11 11 N 1.34780 * 119.99720 * 359.97438 * 9 8 7 12 12 C 1.46493 * 120.00063 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47477 * 174.10186 * 12 11 9 14 14 H 1.09000 * 109.86771 * 56.78695 * 13 12 11 15 15 C 1.54314 * 109.88267 * 177.79875 * 13 12 11 16 16 C 1.55157 * 102.94051 * 141.61366 * 15 13 12 17 17 C 1.54915 * 101.58200 * 324.49825 * 16 15 13 18 18 N 1.47018 * 109.88093 * 295.61190 * 13 12 11 19 19 C 1.36936 * 125.64851 * 61.62209 * 18 13 12 20 20 H 1.08003 * 120.00139 * 324.03527 * 19 18 13 21 21 C 1.38811 * 120.00406 * 144.04122 * 19 18 13 22 22 N 1.31618 * 120.00498 * 162.24996 * 21 19 18 23 23 Si 1.86810 * 119.99669 * 342.25173 * 21 19 18 24 24 H 1.48495 * 109.47043 * 94.11976 * 23 21 19 25 25 H 1.48500 * 109.47045 * 214.12193 * 23 21 19 26 26 H 1.48501 * 109.46981 * 334.11803 * 23 21 19 27 27 C 1.38640 * 120.00048 * 0.02562 * 4 2 1 28 28 H 1.08997 * 109.47556 * 239.99659 * 1 2 3 29 29 H 1.08994 * 109.47397 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46466 * 120.00278 * 1 2 3 31 31 H 1.09001 * 109.47433 * 269.99478 * 3 2 1 32 32 H 1.09007 * 109.47425 * 29.99999 * 3 2 1 33 33 H 1.09006 * 109.46715 * 149.99640 * 3 2 1 34 34 H 1.08003 * 119.88756 * 359.97438 * 5 4 2 35 35 H 1.07996 * 119.88915 * 180.28222 * 6 5 4 36 36 H 1.07998 * 119.99762 * 180.02562 * 7 6 5 37 37 H 0.96998 * 120.00046 * 0.02562 * 11 9 8 38 38 H 1.09004 * 109.47332 * 294.10459 * 12 11 9 39 39 H 1.09002 * 109.47212 * 54.10310 * 12 11 9 40 40 H 1.09000 * 110.72532 * 259.97517 * 15 13 12 41 41 H 1.08995 * 110.72685 * 23.25140 * 15 13 12 42 42 H 1.09000 * 111.00947 * 82.57418 * 16 15 13 43 43 H 1.09003 * 111.00728 * 206.42316 * 16 15 13 44 44 H 1.08999 * 110.36827 * 155.84449 * 17 16 15 45 45 H 1.08998 * 110.36485 * 278.06303 * 17 16 15 46 46 H 0.97000 * 120.00094 * 180.02562 * 22 21 19 47 47 H 1.07997 * 120.11612 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1636 -1.2098 0.0005 5 6 3.5538 -1.2099 0.0011 6 6 4.2494 -2.4041 0.0021 7 6 3.5686 -3.6047 0.0032 8 6 2.1729 -3.6157 0.0038 9 6 1.4412 -4.9007 0.0044 10 8 0.2257 -4.9079 0.0044 11 7 2.1220 -6.0638 0.0038 12 6 1.3972 -7.3369 0.0050 13 6 2.3915 -8.4902 -0.1442 14 1 3.1336 -8.4449 0.6530 15 6 1.6433 -9.8386 -0.0887 16 6 2.3897 -10.6939 -1.1464 17 6 2.7339 -9.6308 -2.2194 18 7 3.0547 -8.4123 -1.4540 19 6 3.8399 -7.3791 -1.8908 20 1 3.5978 -6.3631 -1.6158 21 6 4.9472 -7.6373 -2.6871 22 7 5.4935 -6.6674 -3.3893 23 14 5.6619 -9.3616 -2.7622 24 1 5.0799 -10.0887 -3.9188 25 1 7.1363 -9.2799 -2.9198 26 1 5.3377 -10.0869 -1.5075 27 6 1.4705 -2.4105 0.0005 28 1 -0.3634 -0.5139 0.8899 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3632 -0.5139 -0.8900 31 1 2.3792 1.5835 -1.0277 32 1 1.6083 2.0285 0.5139 33 1 3.1499 1.1385 0.5139 34 1 4.0920 -0.2735 0.0007 35 1 5.3293 -2.3979 0.0072 36 1 4.1159 -4.5358 0.0045 37 1 3.0920 -6.0581 0.0034 38 1 0.8538 -7.4448 0.9437 39 1 0.6928 -7.3547 -0.8267 40 1 1.7299 -10.2874 0.9009 41 1 0.5968 -9.7108 -0.3650 42 1 3.2950 -11.1323 -0.7264 43 1 1.7376 -11.4654 -1.5560 44 1 3.5963 -9.9486 -2.8054 45 1 1.8769 -9.4574 -2.8701 46 1 6.2671 -6.8480 -3.9460 47 1 0.3905 -2.4128 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028285411.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:29 Heat of formation + Delta-G solvation = 14.372753 kcal Electronic energy + Delta-G solvation = -26913.691883 eV Core-core repulsion = 23289.688164 eV Total energy + Delta-G solvation = -3624.003720 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.28566 -40.07046 -39.26558 -36.99998 -35.56572 -34.61075 -32.40223 -31.75800 -31.39033 -30.42252 -29.06503 -26.69339 -25.76251 -25.70026 -23.87700 -22.45666 -22.17951 -21.38066 -20.70788 -19.40779 -18.41559 -17.90043 -17.31109 -16.95385 -16.53834 -16.43776 -16.25105 -16.04408 -15.84412 -15.27508 -14.91106 -14.82686 -14.65418 -14.52510 -14.23861 -13.90805 -13.63186 -13.47219 -13.34983 -13.10855 -13.03790 -13.02546 -12.93571 -12.62054 -12.44872 -12.25330 -12.10166 -11.95935 -11.71830 -11.51306 -11.37346 -10.94428 -10.82504 -10.64733 -10.08429 -9.79933 -8.73243 -8.25812 -8.13239 -5.54613 -0.06479 0.58570 1.32532 1.41807 1.53170 1.92119 2.14320 2.38959 2.47726 2.98503 3.07874 3.37241 3.73945 3.92090 3.94899 3.99695 4.12674 4.13928 4.20105 4.29116 4.35269 4.39720 4.48137 4.51386 4.59803 4.65511 4.71665 4.74841 4.79163 4.86354 4.87973 4.91823 4.99132 5.00132 5.00998 5.14711 5.22347 5.31825 5.41806 5.48459 5.53071 5.57794 5.78329 5.91935 6.24356 6.32887 6.47887 6.59731 6.85075 7.22132 7.58164 8.24400 9.03963 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017052 B = 0.003629 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.684686 B = 7712.748671 C = 8958.046546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.644 5.644 3 C 0.088 3.912 4 C 0.198 3.802 5 C -0.168 4.168 6 C -0.078 4.078 7 C -0.146 4.146 8 C -0.105 4.105 9 C 0.547 3.453 10 O -0.589 6.589 11 N -0.702 5.702 12 C 0.119 3.881 13 C 0.139 3.861 14 H 0.052 0.948 15 C -0.110 4.110 16 C -0.125 4.125 17 C 0.104 3.896 18 N -0.618 5.618 19 C -0.243 4.243 20 H 0.073 0.927 21 C -0.020 4.020 22 N -0.946 5.946 23 Si 0.946 3.054 24 H -0.289 1.289 25 H -0.314 1.314 26 H -0.253 1.253 27 C -0.153 4.153 28 H 0.049 0.951 29 H 0.103 0.897 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.156 0.844 35 H 0.149 0.851 36 H 0.116 0.884 37 H 0.411 0.589 38 H 0.076 0.924 39 H 0.043 0.957 40 H 0.102 0.898 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.099 0.901 44 H 0.023 0.977 45 H 0.026 0.974 46 H 0.261 0.739 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.848 8.722 10.495 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.356 5.356 3 C -0.054 4.054 4 C 0.095 3.905 5 C -0.191 4.191 6 C -0.097 4.097 7 C -0.167 4.167 8 C -0.109 4.109 9 C 0.336 3.664 10 O -0.473 6.473 11 N -0.353 5.353 12 C -0.006 4.006 13 C 0.033 3.967 14 H 0.070 0.930 15 C -0.148 4.148 16 C -0.163 4.163 17 C -0.020 4.020 18 N -0.344 5.344 19 C -0.372 4.372 20 H 0.090 0.910 21 C -0.216 4.216 22 N -0.590 5.590 23 Si 0.777 3.223 24 H -0.217 1.217 25 H -0.243 1.243 26 H -0.177 1.177 27 C -0.177 4.177 28 H 0.068 0.932 29 H 0.121 0.879 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.174 0.826 35 H 0.167 0.833 36 H 0.134 0.866 37 H 0.250 0.750 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.121 0.879 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.117 0.883 44 H 0.041 0.959 45 H 0.044 0.956 46 H 0.070 0.930 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.622 8.972 10.381 15.236 hybrid contribution 1.001 -0.759 -0.874 1.530 sum -5.622 8.213 9.507 13.764 Atomic orbital electron populations 1.21713 0.78737 1.03892 1.00775 1.46543 1.05713 1.03010 1.80333 1.21876 0.97828 0.83757 1.01897 1.17777 0.91757 0.85920 0.95005 1.21145 0.91639 0.99606 1.06663 1.21123 1.01012 0.90994 0.96522 1.21217 0.92526 0.99553 1.03429 1.19692 0.94157 0.92513 1.04496 1.18700 0.86843 0.85011 0.75861 1.90638 1.14804 1.88489 1.53331 1.46204 1.11452 1.05502 1.72149 1.21959 0.95172 0.82977 1.00535 1.21509 0.93134 0.93860 0.88224 0.92998 1.22517 0.99175 0.92548 1.00561 1.22752 1.00730 0.96888 0.95925 1.22064 0.96863 0.88029 0.95041 1.44844 1.56809 1.20133 1.12606 1.18756 1.02602 0.87289 1.28528 0.90975 1.25992 0.97109 0.99971 0.98541 1.69941 1.24884 1.34301 1.29896 0.85793 0.75488 0.82370 0.78668 1.21744 1.24291 1.17686 1.20642 0.99843 0.90235 1.06970 0.93205 0.87876 0.93920 0.92988 0.89306 0.90544 0.82637 0.83293 0.86558 0.74951 0.90586 0.93847 0.87933 0.89953 0.91489 0.88272 0.95945 0.95558 0.93027 0.85938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.69 9.40 127.77 1.20 2.89 16 2 N -0.64 -13.90 3.41 -747.39 -2.55 -16.45 16 3 C 0.09 1.21 10.16 127.77 1.30 2.51 16 4 C 0.20 5.57 6.55 38.17 0.25 5.82 16 5 C -0.17 -4.29 9.20 22.45 0.21 -4.09 16 6 C -0.08 -2.26 10.02 22.21 0.22 -2.03 16 7 C -0.15 -5.17 9.54 22.54 0.21 -4.96 16 8 C -0.11 -4.00 5.87 -20.10 -0.12 -4.12 16 9 C 0.55 23.22 7.77 86.79 0.67 23.90 16 10 O -0.59 -27.53 16.33 -3.86 -0.06 -27.59 16 11 N -0.70 -28.42 4.31 -465.95 -2.01 -30.43 16 12 C 0.12 4.42 5.15 86.38 0.44 4.87 16 13 C 0.14 4.99 3.30 45.34 0.15 5.14 16 14 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 15 C -0.11 -2.97 6.48 31.78 0.21 -2.76 16 16 C -0.12 -3.70 7.09 31.99 0.23 -3.48 16 17 C 0.10 4.25 6.24 86.86 0.54 4.79 16 18 N -0.62 -27.90 2.67 -668.28 -1.79 -29.69 16 19 C -0.24 -13.04 9.50 84.03 0.80 -12.24 16 20 H 0.07 4.10 5.54 -2.91 -0.02 4.08 16 21 C -0.02 -1.10 5.45 84.86 0.46 -0.64 16 22 N -0.95 -57.54 13.97 21.65 0.30 -57.24 16 23 Si 0.95 45.85 24.83 68.60 1.70 47.55 16 24 H -0.29 -13.90 6.81 99.48 0.68 -13.22 16 25 H -0.31 -15.52 7.11 99.48 0.71 -14.82 16 26 H -0.25 -11.40 7.06 99.48 0.70 -10.70 16 27 C -0.15 -5.26 8.85 22.67 0.20 -5.06 16 28 H 0.05 0.96 7.95 -2.39 -0.02 0.94 16 29 H 0.10 1.20 7.79 -2.39 -0.02 1.18 16 30 H 0.04 0.89 7.95 -2.38 -0.02 0.87 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.09 0.80 7.92 -2.38 -0.02 0.78 16 33 H 0.08 0.93 6.19 -2.38 -0.01 0.91 16 34 H 0.16 2.87 6.12 -2.91 -0.02 2.85 16 35 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 36 H 0.12 4.32 6.40 -2.91 -0.02 4.30 16 37 H 0.41 16.93 4.35 -92.71 -0.40 16.52 16 38 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 39 H 0.04 1.80 8.12 -2.39 -0.02 1.78 16 40 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.08 2.05 7.85 -2.39 -0.02 2.03 16 42 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.02 1.01 3.22 -2.39 -0.01 1.00 16 45 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 47 H 0.12 4.28 6.32 -2.91 -0.02 4.26 16 Total: -1.00 -73.22 366.15 3.13 -70.09 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: 0.55 Total: 33.22 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 6.98 Total: 10.54 kcal Atomic # 7 Polarization: -127.77 SS G_CDS: -6.04 Total: -133.81 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.06 Total: -27.59 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.70 Total: 47.55 kcal Total: -73.22 3.13 -70.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028285411.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.461 kcal (2) G-P(sol) polarization free energy of solvation -73.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds