Wall clock time and date at job start Tue Mar 31 2020 11:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 120.00107 * 2 1 4 4 C 1.39045 * 119.99506 * 179.97438 * 2 1 3 5 5 C 1.39219 * 119.93699 * 359.97438 * 4 2 1 6 6 C 1.37606 * 120.07307 * 179.97438 * 5 4 2 7 7 C 1.39796 * 119.92949 * 0.02584 * 6 5 4 8 8 C 1.47524 * 120.06998 * 179.97438 * 7 6 5 9 9 O 1.21597 * 119.99769 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00201 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00292 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47332 * 186.53748 * 11 10 8 13 13 H 1.09004 * 109.99790 * 298.06161 * 12 11 10 14 14 C 1.54330 * 109.99239 * 177.02413 * 12 11 10 15 15 C 1.55153 * 103.02405 * 218.66843 * 14 12 11 16 16 C 1.54914 * 101.58084 * 35.30472 * 15 14 12 17 17 N 1.47023 * 109.87925 * 59.15913 * 12 11 10 18 18 C 1.36936 * 125.64594 * 298.38746 * 17 12 11 19 19 H 1.07998 * 120.00868 * 326.59536 * 18 17 12 20 20 C 1.38814 * 119.99569 * 146.59669 * 18 17 12 21 21 N 1.31616 * 120.00115 * 183.75975 * 20 18 17 22 22 Si 1.86800 * 120.00252 * 3.75575 * 20 18 17 23 23 H 1.48496 * 109.47246 * 185.52179 * 22 20 18 24 24 H 1.48508 * 109.47182 * 65.51830 * 22 20 18 25 25 H 1.48504 * 109.47057 * 305.52153 * 22 20 18 26 26 C 1.39796 * 119.86194 * 0.24778 * 7 6 5 27 27 C 1.37612 * 119.93071 * 359.47089 * 26 7 6 28 28 H 1.09002 * 109.47039 * 270.00656 * 1 2 3 29 29 H 1.09001 * 109.47220 * 29.99870 * 1 2 3 30 30 H 1.08993 * 109.47480 * 150.00317 * 1 2 3 31 31 H 1.09003 * 109.46969 * 269.99650 * 3 2 1 32 32 H 1.09004 * 109.47505 * 29.99813 * 3 2 1 33 33 H 1.08995 * 109.47143 * 150.00194 * 3 2 1 34 34 H 1.07999 * 119.96179 * 0.02562 * 5 4 2 35 35 H 1.07998 * 120.03355 * 180.02562 * 6 5 4 36 36 H 0.97001 * 119.99885 * 359.97438 * 10 8 7 37 37 H 1.09003 * 109.46600 * 66.53930 * 11 10 8 38 38 H 1.09000 * 109.46496 * 306.54230 * 11 10 8 39 39 H 1.09001 * 110.84982 * 100.19491 * 14 12 11 40 40 H 1.09008 * 110.66694 * 337.05074 * 14 12 11 41 41 H 1.09008 * 111.00074 * 277.23436 * 15 14 12 42 42 H 1.08993 * 111.04163 * 153.39264 * 15 14 12 43 43 H 1.09000 * 110.36225 * 204.15417 * 16 15 14 44 44 H 1.09000 * 110.36794 * 81.83145 * 16 15 14 45 45 H 0.97002 * 120.00089 * 5.03318 * 21 20 18 46 46 H 1.08004 * 120.03304 * 179.74942 * 26 7 6 47 47 H 1.07997 * 119.96655 * 180.24830 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1601 -1.2042 0.0005 5 6 1.4626 -2.4091 0.0016 6 6 2.1477 -3.6025 0.0016 7 6 3.5457 -3.6042 0.0011 8 6 4.2833 -4.8818 0.0017 9 8 3.6752 -5.9348 0.0031 10 7 5.6310 -4.8818 0.0006 11 6 6.3635 -6.1506 0.0018 12 6 7.8597 -5.8755 0.1645 13 1 8.2238 -5.2850 -0.6763 14 6 8.6357 -7.2073 0.2421 15 6 9.7224 -6.9170 1.3107 16 6 8.9583 -5.9882 2.2870 17 7 8.1017 -5.1555 1.4233 18 6 7.6083 -3.9187 1.7427 19 1 7.4714 -3.1759 0.9708 20 6 7.2841 -3.6197 3.0589 21 7 6.7410 -2.4580 3.3553 22 14 7.6184 -4.8660 4.4096 23 1 7.0645 -4.3654 5.6932 24 1 9.0835 -5.0659 4.5471 25 1 6.9731 -6.1575 4.0621 26 6 4.2432 -2.3927 0.0058 27 6 3.5524 -1.2026 -0.0001 28 1 -0.3633 0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5137 31 1 2.3792 1.5833 -1.0277 32 1 1.6085 2.0284 0.5138 33 1 3.1499 1.1383 0.5138 34 1 0.3826 -2.4071 0.0016 35 1 1.6060 -4.5367 0.0020 36 1 6.1160 -4.0418 -0.0009 37 1 6.1901 -6.6710 -0.9402 38 1 6.0158 -6.7700 0.8285 39 1 9.0929 -7.4465 -0.7180 40 1 7.9808 -8.0157 0.5678 41 1 10.5763 -6.4026 0.8697 42 1 10.0362 -7.8342 1.8089 43 1 9.6581 -5.3638 2.8425 44 1 8.3481 -6.5772 2.9717 45 1 6.5001 -1.8404 2.6471 46 1 5.3233 -2.3908 0.0095 47 1 4.0907 -0.2663 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028285658.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:34 Heat of formation + Delta-G solvation = 29.239330 kcal Electronic energy + Delta-G solvation = -27220.166237 eV Core-core repulsion = 23596.807181 eV Total energy + Delta-G solvation = -3623.359056 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.80077 -38.70480 -37.72722 -35.81374 -33.81669 -32.77691 -31.04810 -30.34306 -29.84779 -28.95783 -28.18619 -25.57787 -24.51121 -23.34322 -21.99587 -21.59608 -20.89154 -19.60388 -19.23573 -17.95874 -17.31171 -16.39156 -15.92609 -15.58929 -15.17234 -15.02392 -14.88263 -14.59900 -14.27859 -13.57994 -13.46373 -13.37967 -13.35898 -13.15245 -12.77856 -12.75399 -12.34685 -12.19409 -12.13155 -12.01003 -11.86403 -11.67529 -11.27691 -11.01155 -10.95306 -10.63951 -10.54036 -10.46838 -9.84862 -9.68870 -9.36934 -9.24275 -9.15575 -8.70789 -8.65635 -8.17666 -7.18867 -7.02140 -6.26870 -3.45422 1.45084 1.74631 3.07553 3.40641 3.48997 3.51558 3.68318 4.01690 4.41774 4.56944 4.85772 4.90874 4.99786 5.09451 5.20338 5.21542 5.24833 5.33838 5.45136 5.47360 5.50758 5.52630 5.57566 5.61909 5.69099 5.76555 5.84618 5.89284 5.97800 6.14464 6.17902 6.28128 6.30051 6.36722 6.38679 6.42980 6.62723 6.64940 6.78488 6.84040 6.90282 6.97277 7.22018 7.29538 7.52116 7.82066 8.29131 8.40257 8.94430 9.02651 9.48084 10.25871 11.09926 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016212 B = 0.003972 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.681772 B = 7046.878203 C = 7958.286036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.635 5.635 3 C 0.091 3.909 4 C 0.231 3.769 5 C -0.213 4.213 6 C -0.015 4.015 7 C -0.185 4.185 8 C 0.558 3.442 9 O -0.571 6.571 10 N -0.695 5.695 11 C 0.118 3.882 12 C 0.145 3.855 13 H 0.042 0.958 14 C -0.123 4.123 15 C -0.130 4.130 16 C 0.094 3.906 17 N -0.603 5.603 18 C -0.326 4.326 19 H 0.065 0.935 20 C -0.002 4.002 21 N -0.915 5.915 22 Si 1.073 2.927 23 H -0.302 1.302 24 H -0.290 1.290 25 H -0.289 1.289 26 C -0.021 4.021 27 C -0.203 4.203 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.408 0.592 37 H 0.049 0.951 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.031 0.969 45 H 0.262 0.738 46 H 0.127 0.873 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.154 2.832 -8.467 10.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.346 5.346 3 C -0.052 4.052 4 C 0.129 3.871 5 C -0.236 4.236 6 C -0.034 4.034 7 C -0.190 4.190 8 C 0.346 3.654 9 O -0.453 6.453 10 N -0.347 5.347 11 C -0.008 4.008 12 C 0.038 3.962 13 H 0.060 0.940 14 C -0.162 4.162 15 C -0.168 4.168 16 C -0.030 4.030 17 N -0.330 5.330 18 C -0.454 4.454 19 H 0.083 0.917 20 C -0.205 4.205 21 N -0.553 5.553 22 Si 0.906 3.094 23 H -0.230 1.230 24 H -0.217 1.217 25 H -0.217 1.217 26 C -0.041 4.041 27 C -0.225 4.225 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.141 0.859 35 H 0.149 0.851 36 H 0.248 0.752 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.048 0.952 45 H 0.072 0.928 46 H 0.145 0.855 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.734 2.172 -6.806 9.818 hybrid contribution 0.282 0.733 -1.493 1.687 sum -6.452 2.905 -8.299 10.906 Atomic orbital electron populations 1.21640 0.79670 1.02523 1.01236 1.46202 1.05036 1.03408 1.79996 1.21669 0.97669 0.84770 1.01113 1.17963 0.91307 0.85583 0.92258 1.20529 0.99391 0.90786 1.12854 1.20923 0.92762 0.97636 0.92121 1.19743 0.94087 0.93069 1.12081 1.18154 0.82465 0.88552 0.76208 1.90669 1.68790 1.33077 1.52790 1.45947 1.05488 1.10653 1.72650 1.21845 0.93170 0.85920 0.99871 1.21311 0.91435 0.92164 0.91330 0.94050 1.22516 0.97599 0.97106 0.98981 1.22703 0.97584 0.99159 0.97372 1.22293 0.93084 0.93405 0.94221 1.44725 1.56246 1.16951 1.15096 1.19725 1.42140 0.87814 0.95725 0.91718 1.26096 0.95357 1.00516 0.98536 1.70931 1.40283 1.08618 1.35484 0.83752 0.75667 0.74535 0.75479 1.22961 1.21707 1.21656 1.21122 0.99771 0.91153 0.92004 1.20566 0.91778 0.98669 1.11525 0.93332 0.91706 0.91161 0.93398 0.91649 0.90784 0.85862 0.85137 0.75208 0.93328 0.92037 0.91541 0.91374 0.91526 0.91776 0.92134 0.95187 0.92762 0.85530 0.85672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.82 10.17 59.85 0.61 1.43 16 2 N -0.64 -7.53 3.39 -187.56 -0.64 -8.16 16 3 C 0.09 0.87 10.17 59.84 0.61 1.48 16 4 C 0.23 3.42 6.55 -83.86 -0.55 2.88 16 5 C -0.21 -3.17 9.18 -39.45 -0.36 -3.53 16 6 C -0.01 -0.25 9.58 -39.23 -0.38 -0.63 16 7 C -0.18 -3.59 5.88 -104.95 -0.62 -4.21 16 8 C 0.56 12.19 7.76 -12.48 -0.10 12.09 16 9 O -0.57 -13.72 16.32 5.28 0.09 -13.63 16 10 N -0.70 -14.68 4.74 -61.35 -0.29 -14.97 16 11 C 0.12 2.37 5.23 -4.04 -0.02 2.35 16 12 C 0.15 2.79 3.37 -66.95 -0.23 2.56 16 13 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 14 C -0.12 -1.94 6.48 -24.90 -0.16 -2.10 16 15 C -0.13 -2.10 7.09 -24.58 -0.17 -2.28 16 16 C 0.09 1.98 4.63 -2.53 -0.01 1.97 16 17 N -0.60 -13.80 2.91 -162.57 -0.47 -14.27 16 18 C -0.33 -8.45 8.37 -15.06 -0.13 -8.58 16 19 H 0.07 1.73 7.03 -52.49 -0.37 1.36 16 20 C 0.00 -0.06 5.50 -17.43 -0.10 -0.15 16 21 N -0.91 -26.96 13.70 55.49 0.76 -26.20 16 22 Si 1.07 26.74 24.69 -169.99 -4.20 22.54 16 23 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 24 H -0.29 -6.65 5.97 56.52 0.34 -6.31 16 25 H -0.29 -7.14 6.40 56.52 0.36 -6.78 16 26 C -0.02 -0.38 9.53 -39.23 -0.37 -0.75 16 27 C -0.20 -3.24 9.18 -39.44 -0.36 -3.60 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.44 8.07 -51.93 -0.42 0.02 16 30 H 0.07 0.59 6.17 -51.93 -0.32 0.27 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.50 8.07 -51.93 -0.42 0.08 16 33 H 0.07 0.77 6.17 -51.93 -0.32 0.45 16 34 H 0.12 1.49 6.11 -52.49 -0.32 1.17 16 35 H 0.13 2.19 7.64 -52.49 -0.40 1.79 16 36 H 0.41 8.60 3.95 -40.82 -0.16 8.44 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 1.37 8.09 -51.93 -0.42 0.95 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.07 1.04 7.83 -51.92 -0.41 0.63 16 41 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 1.33 6.27 -51.93 -0.33 1.00 16 44 H 0.03 0.67 5.13 -51.93 -0.27 0.40 16 45 H 0.26 7.54 8.73 -40.82 -0.36 7.18 16 46 H 0.13 2.34 6.39 -52.48 -0.34 2.00 16 47 H 0.13 1.76 6.11 -52.49 -0.32 1.44 16 LS Contribution 362.67 15.07 5.47 5.47 Total: -1.00 -32.63 362.67 -8.64 -41.27 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -7.02 Total: 9.05 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -2.34 Total: -1.09 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: -0.64 Total: -63.61 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.09 Total: -13.63 kcal Atomic # 14 Polarization: 26.74 SS G_CDS: -4.20 Total: 22.54 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.63 -8.64 -41.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028285658.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.510 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds