Wall clock time and date at job start Tue Mar 31 2020 11:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 120.00107 * 2 1 4 4 C 1.39045 * 119.99506 * 179.97438 * 2 1 3 5 5 C 1.39219 * 119.93699 * 359.97438 * 4 2 1 6 6 C 1.37606 * 120.07307 * 179.97438 * 5 4 2 7 7 C 1.39796 * 119.92949 * 0.02584 * 6 5 4 8 8 C 1.47524 * 120.06998 * 179.97438 * 7 6 5 9 9 O 1.21597 * 119.99769 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00201 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00292 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47332 * 186.53748 * 11 10 8 13 13 H 1.09004 * 109.99790 * 298.06161 * 12 11 10 14 14 C 1.54330 * 109.99239 * 177.02413 * 12 11 10 15 15 C 1.55153 * 103.02405 * 218.66843 * 14 12 11 16 16 C 1.54914 * 101.58084 * 35.30472 * 15 14 12 17 17 N 1.47023 * 109.87925 * 59.15913 * 12 11 10 18 18 C 1.36936 * 125.64594 * 298.38746 * 17 12 11 19 19 H 1.07998 * 120.00868 * 326.59536 * 18 17 12 20 20 C 1.38814 * 119.99569 * 146.59669 * 18 17 12 21 21 N 1.31616 * 120.00115 * 183.75975 * 20 18 17 22 22 Si 1.86800 * 120.00252 * 3.75575 * 20 18 17 23 23 H 1.48496 * 109.47246 * 185.52179 * 22 20 18 24 24 H 1.48508 * 109.47182 * 65.51830 * 22 20 18 25 25 H 1.48504 * 109.47057 * 305.52153 * 22 20 18 26 26 C 1.39796 * 119.86194 * 0.24778 * 7 6 5 27 27 C 1.37612 * 119.93071 * 359.47089 * 26 7 6 28 28 H 1.09002 * 109.47039 * 270.00656 * 1 2 3 29 29 H 1.09001 * 109.47220 * 29.99870 * 1 2 3 30 30 H 1.08993 * 109.47480 * 150.00317 * 1 2 3 31 31 H 1.09003 * 109.46969 * 269.99650 * 3 2 1 32 32 H 1.09004 * 109.47505 * 29.99813 * 3 2 1 33 33 H 1.08995 * 109.47143 * 150.00194 * 3 2 1 34 34 H 1.07999 * 119.96179 * 0.02562 * 5 4 2 35 35 H 1.07998 * 120.03355 * 180.02562 * 6 5 4 36 36 H 0.97001 * 119.99885 * 359.97438 * 10 8 7 37 37 H 1.09003 * 109.46600 * 66.53930 * 11 10 8 38 38 H 1.09000 * 109.46496 * 306.54230 * 11 10 8 39 39 H 1.09001 * 110.84982 * 100.19491 * 14 12 11 40 40 H 1.09008 * 110.66694 * 337.05074 * 14 12 11 41 41 H 1.09008 * 111.00074 * 277.23436 * 15 14 12 42 42 H 1.08993 * 111.04163 * 153.39264 * 15 14 12 43 43 H 1.09000 * 110.36225 * 204.15417 * 16 15 14 44 44 H 1.09000 * 110.36794 * 81.83145 * 16 15 14 45 45 H 0.97002 * 120.00089 * 5.03318 * 21 20 18 46 46 H 1.08004 * 120.03304 * 179.74942 * 26 7 6 47 47 H 1.07997 * 119.96655 * 180.24830 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1601 -1.2042 0.0005 5 6 1.4626 -2.4091 0.0016 6 6 2.1477 -3.6025 0.0016 7 6 3.5457 -3.6042 0.0011 8 6 4.2833 -4.8818 0.0017 9 8 3.6752 -5.9348 0.0031 10 7 5.6310 -4.8818 0.0006 11 6 6.3635 -6.1506 0.0018 12 6 7.8597 -5.8755 0.1645 13 1 8.2238 -5.2850 -0.6763 14 6 8.6357 -7.2073 0.2421 15 6 9.7224 -6.9170 1.3107 16 6 8.9583 -5.9882 2.2870 17 7 8.1017 -5.1555 1.4233 18 6 7.6083 -3.9187 1.7427 19 1 7.4714 -3.1759 0.9708 20 6 7.2841 -3.6197 3.0589 21 7 6.7410 -2.4580 3.3553 22 14 7.6184 -4.8660 4.4096 23 1 7.0645 -4.3654 5.6932 24 1 9.0835 -5.0659 4.5471 25 1 6.9731 -6.1575 4.0621 26 6 4.2432 -2.3927 0.0058 27 6 3.5524 -1.2026 -0.0001 28 1 -0.3633 0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5137 31 1 2.3792 1.5833 -1.0277 32 1 1.6085 2.0284 0.5138 33 1 3.1499 1.1383 0.5138 34 1 0.3826 -2.4071 0.0016 35 1 1.6060 -4.5367 0.0020 36 1 6.1160 -4.0418 -0.0009 37 1 6.1901 -6.6710 -0.9402 38 1 6.0158 -6.7700 0.8285 39 1 9.0929 -7.4465 -0.7180 40 1 7.9808 -8.0157 0.5678 41 1 10.5763 -6.4026 0.8697 42 1 10.0362 -7.8342 1.8089 43 1 9.6581 -5.3638 2.8425 44 1 8.3481 -6.5772 2.9717 45 1 6.5001 -1.8404 2.6471 46 1 5.3233 -2.3908 0.0095 47 1 4.0907 -0.2663 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028285658.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:33 Heat of formation + Delta-G solvation = 7.990754 kcal Electronic energy + Delta-G solvation = -27221.087645 eV Core-core repulsion = 23596.807181 eV Total energy + Delta-G solvation = -3624.280464 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.22466 -40.13010 -39.29283 -36.97271 -35.48608 -34.75751 -32.30336 -31.69950 -31.60572 -30.37936 -29.03661 -26.90704 -26.00222 -25.06260 -23.27371 -23.02681 -22.24441 -21.25510 -20.72378 -19.72941 -18.82802 -17.71083 -17.37211 -17.08374 -16.71223 -16.26606 -16.07462 -15.91799 -15.84897 -15.38419 -15.15794 -14.91765 -14.57677 -14.53014 -14.32908 -13.88294 -13.51764 -13.43113 -13.31016 -13.29683 -12.96248 -12.91931 -12.84973 -12.70141 -12.62968 -12.15414 -11.99627 -11.77528 -11.45894 -11.24023 -11.15829 -10.88456 -10.85620 -10.68059 -10.01052 -9.89431 -9.00075 -8.37210 -8.29430 -5.53454 0.07111 0.45390 1.39090 1.49981 1.66776 1.96086 2.14807 2.43871 2.54811 2.98473 3.22215 3.37589 3.75879 3.87784 3.91369 3.95322 4.03180 4.16828 4.19750 4.31841 4.35573 4.36872 4.44594 4.49546 4.52408 4.64014 4.66503 4.75721 4.78275 4.81422 4.86725 4.89494 5.01856 5.04151 5.04385 5.16052 5.17251 5.27384 5.33117 5.48061 5.48887 5.63156 5.72634 5.79223 6.25251 6.28191 6.40492 6.70136 6.91090 7.32944 7.49396 8.26296 8.96653 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016212 B = 0.003972 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.681772 B = 7046.878203 C = 7958.286036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.632 5.632 3 C 0.083 3.917 4 C 0.240 3.760 5 C -0.209 4.209 6 C -0.020 4.020 7 C -0.221 4.221 8 C 0.550 3.450 9 O -0.602 6.602 10 N -0.700 5.700 11 C 0.118 3.882 12 C 0.142 3.858 13 H 0.048 0.952 14 C -0.114 4.114 15 C -0.116 4.116 16 C 0.082 3.918 17 N -0.623 5.623 18 C -0.296 4.296 19 H 0.050 0.950 20 C -0.055 4.055 21 N -0.953 5.953 22 Si 1.100 2.900 23 H -0.318 1.318 24 H -0.259 1.259 25 H -0.291 1.291 26 C -0.029 4.029 27 C -0.213 4.213 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.156 0.844 35 H 0.130 0.870 36 H 0.406 0.594 37 H 0.070 0.930 38 H 0.035 0.965 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.048 0.952 44 H 0.021 0.979 45 H 0.253 0.747 46 H 0.111 0.889 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.273 2.761 -9.611 11.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.341 5.341 3 C -0.060 4.060 4 C 0.134 3.866 5 C -0.231 4.231 6 C -0.040 4.040 7 C -0.226 4.226 8 C 0.340 3.660 9 O -0.487 6.487 10 N -0.350 5.350 11 C -0.007 4.007 12 C 0.035 3.965 13 H 0.066 0.934 14 C -0.153 4.153 15 C -0.154 4.154 16 C -0.042 4.042 17 N -0.350 5.350 18 C -0.426 4.426 19 H 0.067 0.933 20 C -0.252 4.252 21 N -0.595 5.595 22 Si 0.930 3.070 23 H -0.248 1.248 24 H -0.184 1.184 25 H -0.218 1.218 26 C -0.049 4.049 27 C -0.235 4.235 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.173 0.827 35 H 0.148 0.852 36 H 0.245 0.755 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.121 0.879 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.114 0.886 43 H 0.067 0.933 44 H 0.038 0.962 45 H 0.063 0.937 46 H 0.129 0.871 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.828 2.110 -7.980 10.712 hybrid contribution 0.225 0.889 -1.243 1.545 sum -6.602 2.999 -9.223 11.732 Atomic orbital electron populations 1.21916 0.77536 1.04255 1.02179 1.46570 1.06531 1.02963 1.77991 1.21877 0.97527 0.84271 1.02283 1.18091 0.91029 0.86998 0.90507 1.20795 1.00865 0.89796 1.11668 1.21022 0.91968 0.98754 0.92251 1.19695 0.95054 0.92232 1.15653 1.18623 0.82651 0.89220 0.75473 1.90620 1.69272 1.34264 1.54572 1.46031 1.05602 1.10944 1.72453 1.21899 0.93684 0.85325 0.99835 1.21517 0.91212 0.94113 0.89650 0.93376 1.22550 0.97077 0.94790 1.00855 1.22671 0.97291 0.99305 0.96117 1.22396 0.92950 0.93758 0.95104 1.44915 1.56954 1.16479 1.16607 1.19637 1.39313 0.88797 0.94820 0.93279 1.26903 0.96285 1.01232 1.00740 1.70983 1.43484 1.09826 1.35256 0.83422 0.77325 0.73033 0.73195 1.24789 1.18389 1.21802 1.21025 0.99116 0.91829 0.92947 1.20730 0.92764 0.98366 1.11626 0.92683 0.88986 0.90545 0.91930 0.89155 0.91929 0.82679 0.85244 0.75467 0.91239 0.94627 0.87886 0.90792 0.90302 0.88637 0.93330 0.96164 0.93736 0.87114 0.84215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.17 10.17 127.77 1.30 2.47 16 2 N -0.63 -13.32 3.39 -747.31 -2.53 -15.86 16 3 C 0.08 1.38 10.17 127.77 1.30 2.68 16 4 C 0.24 6.81 6.55 38.47 0.25 7.06 16 5 C -0.21 -5.97 9.18 22.36 0.21 -5.77 16 6 C -0.02 -0.71 9.58 22.50 0.22 -0.49 16 7 C -0.22 -9.01 5.88 -20.07 -0.12 -9.13 16 8 C 0.55 25.24 7.76 86.69 0.67 25.91 16 9 O -0.60 -30.17 16.32 -4.02 -0.07 -30.23 16 10 N -0.70 -30.75 4.74 -466.28 -2.21 -32.96 16 11 C 0.12 4.77 5.23 86.38 0.45 5.22 16 12 C 0.14 5.27 3.37 45.34 0.15 5.42 16 13 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 14 C -0.11 -3.20 6.48 31.78 0.21 -3.00 16 15 C -0.12 -3.32 7.09 31.99 0.23 -3.09 16 16 C 0.08 3.30 4.63 86.86 0.40 3.71 16 17 N -0.62 -28.30 2.91 -668.24 -1.94 -30.24 16 18 C -0.30 -15.75 8.37 84.03 0.70 -15.05 16 19 H 0.05 2.75 7.03 -2.91 -0.02 2.73 16 20 C -0.05 -3.15 5.50 84.86 0.47 -2.68 16 21 N -0.95 -58.53 13.70 21.65 0.30 -58.24 16 22 Si 1.10 55.07 24.69 68.60 1.69 56.77 16 23 H -0.32 -16.70 7.11 99.48 0.71 -15.99 16 24 H -0.26 -11.47 5.97 99.48 0.59 -10.88 16 25 H -0.29 -14.40 6.40 99.48 0.64 -13.76 16 26 C -0.03 -1.12 9.53 22.50 0.21 -0.91 16 27 C -0.21 -6.85 9.18 22.36 0.21 -6.65 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 29 H 0.09 0.85 8.07 -2.39 -0.02 0.83 16 30 H 0.08 1.01 6.17 -2.39 -0.01 1.00 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.09 1.08 8.07 -2.38 -0.02 1.07 16 33 H 0.06 1.21 6.17 -2.39 -0.01 1.19 16 34 H 0.16 3.35 6.11 -2.91 -0.02 3.33 16 35 H 0.13 4.48 7.64 -2.91 -0.02 4.46 16 36 H 0.41 18.05 3.95 -92.71 -0.37 17.68 16 37 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.04 1.61 8.09 -2.39 -0.02 1.59 16 39 H 0.10 2.20 8.14 -2.39 -0.02 2.19 16 40 H 0.07 2.02 7.83 -2.38 -0.02 2.00 16 41 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 42 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.05 2.05 6.27 -2.39 -0.01 2.04 16 44 H 0.02 0.88 5.13 -2.39 -0.01 0.87 16 45 H 0.25 15.35 8.73 -92.71 -0.81 14.54 16 46 H 0.11 4.45 6.39 -2.91 -0.02 4.43 16 47 H 0.14 3.96 6.11 -2.91 -0.02 3.94 16 Total: -1.00 -74.20 362.67 2.49 -71.71 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: 0.40 Total: 33.33 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 6.86 Total: 5.71 kcal Atomic # 7 Polarization: -130.90 SS G_CDS: -6.39 Total: -137.30 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.07 Total: -30.23 kcal Atomic # 14 Polarization: 55.07 SS G_CDS: 1.69 Total: 56.77 kcal Total: -74.20 2.49 -71.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028285658.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.703 kcal (2) G-P(sol) polarization free energy of solvation -74.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds