Wall clock time and date at job start Tue Mar 31 2020 11:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 111.00430 * 2 1 4 4 C 1.38875 * 110.99997 * 123.95585 * 2 1 3 5 5 C 1.38952 * 120.17400 * 299.99601 * 4 2 1 6 6 C 1.37957 * 120.06400 * 179.97438 * 5 4 2 7 7 C 1.38610 * 120.42275 * 0.02562 * 6 5 4 8 8 C 1.37750 * 120.35349 * 0.02562 * 7 6 5 9 9 C 1.39736 * 119.92158 * 359.70923 * 8 7 6 10 10 C 1.47433 * 120.20339 * 180.29788 * 9 8 7 11 11 O 1.21609 * 120.00021 * 180.24797 * 10 9 8 12 12 N 1.34776 * 120.00531 * 0.24713 * 10 9 8 13 13 C 1.46493 * 120.00345 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47403 * 185.13464 * 13 12 10 15 15 H 1.09000 * 109.87207 * 303.57319 * 14 13 12 16 16 C 1.54321 * 109.88517 * 64.58549 * 14 13 12 17 17 C 1.55151 * 102.94218 * 141.61105 * 16 14 13 18 18 C 1.54901 * 101.58412 * 324.50025 * 17 16 14 19 19 N 1.47016 * 109.88453 * 182.39921 * 14 13 12 20 20 C 1.36933 * 125.65186 * 61.61713 * 19 14 13 21 21 H 1.08003 * 119.99683 * 14.76186 * 20 19 14 22 22 C 1.38812 * 120.00455 * 194.75947 * 20 19 14 23 23 N 1.31618 * 119.99706 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00186 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47502 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47112 * 120.00163 * 24 22 20 27 27 H 1.48500 * 109.47039 * 239.99980 * 24 22 20 28 28 H 1.08996 * 109.46911 * 296.04436 * 1 2 3 29 29 H 1.09002 * 109.46834 * 56.04280 * 1 2 3 30 30 H 1.08996 * 109.47348 * 176.04474 * 1 2 3 31 31 H 1.08993 * 109.47304 * 183.95312 * 3 2 1 32 32 H 1.09003 * 109.46997 * 303.95549 * 3 2 1 33 33 H 1.09000 * 109.46648 * 63.95109 * 3 2 1 34 34 H 1.07998 * 119.97269 * 0.02562 * 5 4 2 35 35 H 1.07999 * 119.79164 * 179.97438 * 6 5 4 36 36 H 1.08001 * 119.82331 * 179.97438 * 7 6 5 37 37 H 1.08005 * 120.03742 * 179.97438 * 8 7 6 38 38 H 0.97007 * 119.99443 * 359.97438 * 12 10 9 39 39 H 1.09003 * 109.47410 * 305.13166 * 13 12 10 40 40 H 1.09001 * 109.47102 * 65.13180 * 13 12 10 41 41 H 1.08998 * 110.72047 * 259.98094 * 16 14 13 42 42 H 1.09004 * 110.71660 * 23.24774 * 16 14 13 43 43 H 1.09008 * 111.00289 * 82.57945 * 17 16 14 44 44 H 1.08999 * 111.00647 * 206.42524 * 17 16 14 45 45 H 1.08999 * 110.36852 * 155.84689 * 18 17 16 46 46 H 1.08997 * 110.37137 * 278.05969 * 18 17 16 47 47 H 0.97001 * 120.00395 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9667 -0.7242 1.0754 5 6 1.6563 -0.3456 2.3759 6 6 2.1515 -1.0670 3.4425 7 6 2.9607 -2.1716 3.2275 8 6 3.2802 -2.5616 1.9456 9 6 2.7821 -1.8448 0.8544 10 6 3.1147 -2.2607 -0.5204 11 8 2.6829 -1.6315 -1.4672 12 7 3.8974 -3.3381 -0.7279 13 6 4.2284 -3.7509 -2.0939 14 6 5.0151 -5.0626 -2.0540 15 1 5.9036 -4.9429 -1.4341 16 6 4.1272 -6.1900 -1.4864 17 6 4.5261 -7.4150 -2.3509 18 6 4.7777 -6.7543 -3.7292 19 7 5.4016 -5.4556 -3.4169 20 6 6.2071 -4.7345 -4.2573 21 1 6.8051 -3.9237 -3.8682 22 6 6.2553 -5.0458 -5.6092 23 7 5.5262 -6.0336 -6.0834 24 14 7.3548 -4.0626 -6.7554 25 1 8.0654 -3.0137 -5.9809 26 1 8.3465 -4.9689 -7.3881 27 1 6.5259 -3.4232 -7.8087 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0828 1.3431 -0.0708 32 1 1.5899 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.0261 0.5136 2.5518 35 1 1.9078 -0.7686 4.4514 36 1 3.3434 -2.7291 4.0697 37 1 3.9115 -3.4229 1.7840 38 1 4.2422 -3.8397 0.0274 39 1 3.3098 -3.8954 -2.6625 40 1 4.8329 -2.9790 -2.5703 41 1 4.3555 -6.3686 -0.4356 42 1 3.0715 -5.9525 -1.6178 43 1 5.4341 -7.8828 -1.9702 44 1 3.7107 -8.1362 -2.4064 45 1 5.4543 -7.3665 -4.3255 46 1 3.8356 -6.6073 -4.2571 47 1 5.5600 -6.2514 -7.0280 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028347397.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:41 Heat of formation + Delta-G solvation = 38.102090 kcal Electronic energy + Delta-G solvation = -26837.983742 eV Core-core repulsion = 23215.009004 eV Total energy + Delta-G solvation = -3622.974738 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.46774 -38.64052 -37.39860 -36.69556 -34.04174 -32.45831 -31.51494 -30.07470 -29.54964 -28.47783 -27.68556 -25.21862 -24.61625 -24.09777 -23.13535 -21.09701 -20.40504 -19.98185 -19.47722 -17.91693 -16.77936 -16.35679 -16.08639 -15.41431 -15.23872 -14.98699 -14.63954 -14.54869 -14.52834 -14.14523 -13.78797 -13.65248 -13.05679 -12.98539 -12.64591 -12.46961 -12.23971 -12.04424 -11.98113 -11.85562 -11.78735 -11.65771 -11.41996 -11.22883 -10.90359 -10.77383 -10.18214 -10.05220 -9.88727 -9.80207 -9.69172 -9.46829 -9.18343 -8.90593 -8.58221 -8.43026 -8.33286 -6.80222 -5.73777 -3.10110 0.76781 1.05024 3.05022 3.41631 3.48453 3.50385 3.57379 3.73453 3.88083 4.51588 4.59761 4.66232 4.81173 5.00570 5.11241 5.13840 5.19646 5.36706 5.38996 5.41661 5.44800 5.47934 5.53908 5.63109 5.68140 5.78224 5.80127 5.85076 6.00511 6.10442 6.14598 6.18558 6.23708 6.28826 6.50111 6.51679 6.60844 6.67677 6.80582 6.82523 6.91370 7.13648 7.29524 7.54683 7.64735 7.82343 7.97359 8.28923 8.72745 9.20760 9.81375 10.48915 11.38443 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016194 B = 0.003276 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.619360 B = 8544.925773 C = 9546.344011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.492 5.492 3 C 0.036 3.964 4 C 0.144 3.856 5 C -0.162 4.162 6 C -0.092 4.092 7 C -0.131 4.131 8 C -0.084 4.084 9 C -0.107 4.107 10 C 0.544 3.456 11 O -0.499 6.499 12 N -0.726 5.726 13 C 0.113 3.887 14 C 0.152 3.848 15 H 0.036 0.964 16 C -0.126 4.126 17 C -0.149 4.149 18 C 0.173 3.827 19 N -0.589 5.589 20 C -0.232 4.232 21 H 0.076 0.924 22 C -0.002 4.002 23 N -0.915 5.915 24 Si 0.910 3.090 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.289 1.289 28 H 0.024 0.976 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.024 0.976 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.390 0.610 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.071 0.929 46 H 0.026 0.974 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.044 7.837 20.555 23.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.211 5.211 3 C -0.111 4.111 4 C 0.049 3.951 5 C -0.182 4.182 6 C -0.111 4.111 7 C -0.149 4.149 8 C -0.103 4.103 9 C -0.111 4.111 10 C 0.329 3.671 11 O -0.373 6.373 12 N -0.379 5.379 13 C -0.012 4.012 14 C 0.043 3.957 15 H 0.054 0.946 16 C -0.164 4.164 17 C -0.187 4.187 18 C 0.048 3.952 19 N -0.313 5.313 20 C -0.360 4.360 21 H 0.094 0.906 22 C -0.199 4.199 23 N -0.562 5.562 24 Si 0.740 3.260 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.216 1.216 28 H 0.043 0.957 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.043 0.957 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.224 0.776 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.044 0.956 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.140 8.073 19.089 22.267 hybrid contribution 0.373 0.704 0.479 0.929 sum -7.767 8.776 19.568 22.809 Atomic orbital electron populations 1.22403 0.85782 1.02708 1.00330 1.59193 1.07983 1.13723 1.40242 1.22384 1.01244 0.87133 1.00289 1.18771 0.94430 0.93124 0.88803 1.21674 1.02274 1.01225 0.93035 1.21146 0.96381 0.94871 0.98716 1.21096 0.99260 0.97610 0.96899 1.21369 0.98114 0.98781 0.92061 1.20207 1.00327 0.96603 0.93986 1.18013 0.79692 0.81088 0.88310 1.90849 1.51076 1.52762 1.42631 1.46114 1.51771 1.29991 1.10011 1.22162 1.00096 0.98218 0.80701 1.21124 0.94062 0.91081 0.89393 0.94624 1.22602 0.99427 0.96319 0.98038 1.23003 0.99814 0.96499 0.99415 1.21441 0.97123 0.85970 0.90689 1.44485 1.55723 1.19875 1.11257 1.19033 1.16589 1.12348 0.88060 0.90605 1.24912 0.99550 0.98787 0.96639 1.69948 1.42717 1.30326 1.13179 0.86077 0.79577 0.79344 0.80978 1.20369 1.21754 1.21607 0.95706 0.90736 0.91271 0.91243 0.90730 0.95737 0.85897 0.85828 0.85410 0.85171 0.77585 0.91654 0.91665 0.92500 0.91792 0.92344 0.92384 0.91039 0.95599 0.93689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.34 60.06 0.56 0.94 16 2 N -0.49 -6.64 2.92 -186.64 -0.54 -7.19 16 3 C 0.04 0.40 9.38 60.07 0.56 0.97 16 4 C 0.14 1.85 4.72 -83.61 -0.39 1.46 16 5 C -0.16 -1.61 8.55 -39.42 -0.34 -1.94 16 6 C -0.09 -0.77 10.03 -39.55 -0.40 -1.17 16 7 C -0.13 -1.11 10.02 -39.62 -0.40 -1.51 16 8 C -0.08 -0.87 9.53 -39.20 -0.37 -1.24 16 9 C -0.11 -1.46 5.89 -104.80 -0.62 -2.08 16 10 C 0.54 9.28 7.76 -12.52 -0.10 9.18 16 11 O -0.50 -10.46 15.02 5.27 0.08 -10.38 16 12 N -0.73 -11.54 5.28 -61.38 -0.32 -11.86 16 13 C 0.11 2.26 5.07 -4.04 -0.02 2.24 16 14 C 0.15 3.04 3.22 -66.96 -0.22 2.82 16 15 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 16 C -0.13 -2.12 6.10 -24.90 -0.15 -2.28 16 17 C -0.15 -2.75 7.08 -24.59 -0.17 -2.92 16 18 C 0.17 4.15 5.41 -2.53 -0.01 4.14 16 19 N -0.59 -14.78 3.13 -162.58 -0.51 -15.29 16 20 C -0.23 -6.42 9.76 -15.06 -0.15 -6.57 16 21 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 22 C 0.00 -0.05 5.47 -17.43 -0.10 -0.14 16 23 N -0.92 -26.89 10.58 55.49 0.59 -26.30 16 24 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H 0.02 0.22 7.11 -51.93 -0.37 -0.15 16 29 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 33 H 0.02 0.22 7.33 -51.93 -0.38 -0.16 16 34 H 0.12 1.02 7.01 -52.49 -0.37 0.65 16 35 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.13 1.09 6.40 -52.48 -0.34 0.76 16 38 H 0.39 4.95 6.37 -40.82 -0.26 4.69 16 39 H 0.07 1.46 8.08 -51.93 -0.42 1.04 16 40 H 0.07 1.47 7.92 -51.93 -0.41 1.06 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 1.09 7.81 -51.93 -0.41 0.68 16 43 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.07 1.91 6.94 -51.93 -0.36 1.55 16 46 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 47 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 375.49 15.07 5.66 5.66 Total: -1.00 -33.23 375.49 -9.88 -43.11 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.50 Total: 3.04 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -2.31 Total: 1.90 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: -0.79 Total: -60.64 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.23 -9.88 -43.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028347397.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.212 kcal (2) G-P(sol) polarization free energy of solvation -33.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds