Wall clock time and date at job start Tue Mar 31 2020 11:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 111.00430 * 2 1 4 4 C 1.38875 * 110.99997 * 123.95585 * 2 1 3 5 5 C 1.38952 * 120.17400 * 299.99601 * 4 2 1 6 6 C 1.37957 * 120.06400 * 179.97438 * 5 4 2 7 7 C 1.38610 * 120.42275 * 0.02562 * 6 5 4 8 8 C 1.37750 * 120.35349 * 0.02562 * 7 6 5 9 9 C 1.39736 * 119.92158 * 359.70923 * 8 7 6 10 10 C 1.47433 * 120.20339 * 180.29788 * 9 8 7 11 11 O 1.21609 * 120.00021 * 180.24797 * 10 9 8 12 12 N 1.34776 * 120.00531 * 0.24713 * 10 9 8 13 13 C 1.46493 * 120.00345 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47403 * 185.13464 * 13 12 10 15 15 H 1.09000 * 109.87207 * 303.57319 * 14 13 12 16 16 C 1.54321 * 109.88517 * 64.58549 * 14 13 12 17 17 C 1.55151 * 102.94218 * 141.61105 * 16 14 13 18 18 C 1.54901 * 101.58412 * 324.50025 * 17 16 14 19 19 N 1.47016 * 109.88453 * 182.39921 * 14 13 12 20 20 C 1.36933 * 125.65186 * 61.61713 * 19 14 13 21 21 H 1.08003 * 119.99683 * 14.76186 * 20 19 14 22 22 C 1.38812 * 120.00455 * 194.75947 * 20 19 14 23 23 N 1.31618 * 119.99706 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00186 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47502 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47112 * 120.00163 * 24 22 20 27 27 H 1.48500 * 109.47039 * 239.99980 * 24 22 20 28 28 H 1.08996 * 109.46911 * 296.04436 * 1 2 3 29 29 H 1.09002 * 109.46834 * 56.04280 * 1 2 3 30 30 H 1.08996 * 109.47348 * 176.04474 * 1 2 3 31 31 H 1.08993 * 109.47304 * 183.95312 * 3 2 1 32 32 H 1.09003 * 109.46997 * 303.95549 * 3 2 1 33 33 H 1.09000 * 109.46648 * 63.95109 * 3 2 1 34 34 H 1.07998 * 119.97269 * 0.02562 * 5 4 2 35 35 H 1.07999 * 119.79164 * 179.97438 * 6 5 4 36 36 H 1.08001 * 119.82331 * 179.97438 * 7 6 5 37 37 H 1.08005 * 120.03742 * 179.97438 * 8 7 6 38 38 H 0.97007 * 119.99443 * 359.97438 * 12 10 9 39 39 H 1.09003 * 109.47410 * 305.13166 * 13 12 10 40 40 H 1.09001 * 109.47102 * 65.13180 * 13 12 10 41 41 H 1.08998 * 110.72047 * 259.98094 * 16 14 13 42 42 H 1.09004 * 110.71660 * 23.24774 * 16 14 13 43 43 H 1.09008 * 111.00289 * 82.57945 * 17 16 14 44 44 H 1.08999 * 111.00647 * 206.42524 * 17 16 14 45 45 H 1.08999 * 110.36852 * 155.84689 * 18 17 16 46 46 H 1.08997 * 110.37137 * 278.05969 * 18 17 16 47 47 H 0.97001 * 120.00395 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9667 -0.7242 1.0754 5 6 1.6563 -0.3456 2.3759 6 6 2.1515 -1.0670 3.4425 7 6 2.9607 -2.1716 3.2275 8 6 3.2802 -2.5616 1.9456 9 6 2.7821 -1.8448 0.8544 10 6 3.1147 -2.2607 -0.5204 11 8 2.6829 -1.6315 -1.4672 12 7 3.8974 -3.3381 -0.7279 13 6 4.2284 -3.7509 -2.0939 14 6 5.0151 -5.0626 -2.0540 15 1 5.9036 -4.9429 -1.4341 16 6 4.1272 -6.1900 -1.4864 17 6 4.5261 -7.4150 -2.3509 18 6 4.7777 -6.7543 -3.7292 19 7 5.4016 -5.4556 -3.4169 20 6 6.2071 -4.7345 -4.2573 21 1 6.8051 -3.9237 -3.8682 22 6 6.2553 -5.0458 -5.6092 23 7 5.5262 -6.0336 -6.0834 24 14 7.3548 -4.0626 -6.7554 25 1 8.0654 -3.0137 -5.9809 26 1 8.3465 -4.9689 -7.3881 27 1 6.5259 -3.4232 -7.8087 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0828 1.3431 -0.0708 32 1 1.5899 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.0261 0.5136 2.5518 35 1 1.9078 -0.7686 4.4514 36 1 3.3434 -2.7291 4.0697 37 1 3.9115 -3.4229 1.7840 38 1 4.2422 -3.8397 0.0274 39 1 3.3098 -3.8954 -2.6625 40 1 4.8329 -2.9790 -2.5703 41 1 4.3555 -6.3686 -0.4356 42 1 3.0715 -5.9525 -1.6178 43 1 5.4341 -7.8828 -1.9702 44 1 3.7107 -8.1362 -2.4064 45 1 5.4543 -7.3665 -4.3255 46 1 3.8356 -6.6073 -4.2571 47 1 5.5600 -6.2514 -7.0280 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028347397.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:40 Heat of formation + Delta-G solvation = 16.870656 kcal Electronic energy + Delta-G solvation = -26838.904406 eV Core-core repulsion = 23215.009004 eV Total energy + Delta-G solvation = -3623.895402 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.45299 -39.97250 -38.98846 -37.51941 -35.60404 -34.39491 -32.49259 -31.35264 -30.84980 -30.09050 -28.54642 -26.80895 -26.08449 -25.26805 -24.29417 -22.05675 -21.95897 -21.37093 -21.05063 -19.16245 -18.46807 -17.46051 -17.29591 -16.83459 -16.40595 -16.27492 -15.89362 -15.86770 -15.63331 -15.48953 -15.31833 -14.59700 -14.55195 -14.15870 -13.96088 -13.66106 -13.54081 -13.36927 -13.25651 -13.05044 -12.93291 -12.85433 -12.75168 -12.69528 -12.66729 -12.15915 -11.98418 -11.86504 -11.70433 -11.48284 -11.39438 -10.84262 -10.68970 -10.08091 -9.86649 -9.65714 -9.21447 -8.85807 -7.89016 -5.26460 -0.09177 0.32151 1.42894 1.45495 1.54744 2.03113 2.22593 2.50342 2.89244 2.90804 3.30965 3.69379 3.85559 3.89024 3.98688 4.01297 4.13110 4.16851 4.26921 4.32303 4.34157 4.47138 4.47753 4.54851 4.55003 4.62035 4.67951 4.74459 4.88136 4.90881 4.91997 4.98399 5.01979 5.15540 5.22743 5.30756 5.41443 5.42380 5.46983 5.48569 5.61264 5.66810 5.78082 5.82799 5.99029 6.22984 6.44680 6.73892 7.09044 7.43897 7.76048 8.42026 9.22260 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016194 B = 0.003276 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.619360 B = 8544.925773 C = 9546.344011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.527 5.527 3 C 0.040 3.960 4 C 0.126 3.874 5 C -0.164 4.164 6 C -0.079 4.079 7 C -0.125 4.125 8 C -0.081 4.081 9 C -0.141 4.141 10 C 0.541 3.459 11 O -0.551 6.551 12 N -0.711 5.711 13 C 0.136 3.864 14 C 0.149 3.851 15 H 0.053 0.947 16 C -0.112 4.112 17 C -0.132 4.132 18 C 0.174 3.826 19 N -0.611 5.611 20 C -0.239 4.239 21 H 0.076 0.924 22 C -0.060 4.060 23 N -0.946 5.946 24 Si 0.971 3.029 25 H -0.267 1.267 26 H -0.287 1.287 27 H -0.296 1.296 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.140 0.860 35 H 0.159 0.841 36 H 0.163 0.837 37 H 0.149 0.851 38 H 0.410 0.590 39 H 0.031 0.969 40 H 0.029 0.971 41 H 0.107 0.893 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.036 0.964 46 H -0.011 1.011 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.997 7.946 25.142 27.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.248 5.248 3 C -0.106 4.106 4 C 0.031 3.969 5 C -0.185 4.185 6 C -0.097 4.097 7 C -0.143 4.143 8 C -0.100 4.100 9 C -0.145 4.145 10 C 0.329 3.671 11 O -0.429 6.429 12 N -0.365 5.365 13 C 0.009 3.991 14 C 0.041 3.959 15 H 0.070 0.930 16 C -0.150 4.150 17 C -0.171 4.171 18 C 0.049 3.951 19 N -0.336 5.336 20 C -0.368 4.368 21 H 0.094 0.906 22 C -0.254 4.254 23 N -0.594 5.594 24 Si 0.800 3.200 25 H -0.192 1.192 26 H -0.213 1.213 27 H -0.223 1.223 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.157 0.843 35 H 0.177 0.823 36 H 0.181 0.819 37 H 0.166 0.834 38 H 0.247 0.753 39 H 0.050 0.950 40 H 0.047 0.953 41 H 0.125 0.875 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.101 0.899 45 H 0.055 0.945 46 H 0.008 0.992 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.082 8.175 23.753 26.388 hybrid contribution 0.327 0.718 -0.831 1.146 sum -7.755 8.893 22.922 25.781 Atomic orbital electron populations 1.22362 0.84892 1.01966 1.01601 1.59092 1.09123 1.14748 1.41819 1.22334 1.00010 0.86728 1.01558 1.18990 0.94867 0.93169 0.89877 1.21840 1.02550 1.02008 0.92056 1.21622 0.94520 0.93785 0.99823 1.21514 0.98336 0.97521 0.96913 1.21603 0.97713 0.98771 0.91963 1.20043 1.03281 0.98733 0.92429 1.18686 0.78507 0.80250 0.89659 1.90814 1.53046 1.54341 1.44687 1.45806 1.51707 1.30186 1.08804 1.21582 0.97744 0.97336 0.82428 1.21336 0.95231 0.92059 0.87244 0.92970 1.22591 0.98502 0.93629 1.00271 1.22868 1.01475 0.97202 0.95538 1.21261 0.94350 0.85908 0.93624 1.44763 1.55550 1.20491 1.12773 1.19335 1.16622 1.12019 0.88825 0.90641 1.25685 1.01447 1.00036 0.98191 1.70148 1.44472 1.31829 1.12915 0.85116 0.77886 0.78185 0.78825 1.19188 1.21334 1.22279 0.93261 0.90688 0.92824 0.93074 0.90665 0.93307 0.84255 0.82329 0.81902 0.83354 0.75257 0.95043 0.95285 0.87489 0.92004 0.90875 0.89937 0.94524 0.99249 0.94323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.84 9.34 127.69 1.19 2.03 16 2 N -0.53 -14.41 2.92 -744.41 -2.17 -16.59 16 3 C 0.04 0.90 9.38 127.69 1.20 2.10 16 4 C 0.13 3.13 4.72 38.71 0.18 3.31 16 5 C -0.16 -2.77 8.55 22.37 0.19 -2.57 16 6 C -0.08 -0.94 10.03 22.29 0.22 -0.72 16 7 C -0.13 -1.52 10.02 22.24 0.22 -1.29 16 8 C -0.08 -1.43 9.53 22.52 0.21 -1.21 16 9 C -0.14 -3.71 5.89 -19.98 -0.12 -3.83 16 10 C 0.54 18.88 7.76 86.67 0.67 19.56 16 11 O -0.55 -24.52 15.02 -4.06 -0.06 -24.58 16 12 N -0.71 -22.43 5.28 -466.37 -2.46 -24.89 16 13 C 0.14 5.59 5.07 86.38 0.44 6.03 16 14 C 0.15 5.87 3.22 45.34 0.15 6.01 16 15 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 16 C -0.11 -3.49 6.10 31.78 0.19 -3.29 16 17 C -0.13 -4.64 7.08 31.98 0.23 -4.41 16 18 C 0.17 8.62 5.41 86.85 0.47 9.09 16 19 N -0.61 -31.48 3.13 -668.29 -2.09 -33.57 16 20 C -0.24 -13.65 9.76 84.03 0.82 -12.83 16 21 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 22 C -0.06 -3.50 5.47 84.86 0.46 -3.04 16 23 N -0.95 -58.18 10.58 21.65 0.23 -57.95 16 24 Si 0.97 47.43 29.55 68.60 2.03 49.46 16 25 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 26 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 27 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 28 H 0.05 0.80 7.11 -2.39 -0.02 0.79 16 29 H 0.07 1.57 8.12 -2.39 -0.02 1.55 16 30 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.61 8.12 -2.39 -0.02 1.59 16 33 H 0.05 0.82 7.33 -2.39 -0.02 0.81 16 34 H 0.14 1.82 7.01 -2.91 -0.02 1.80 16 35 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 36 H 0.16 0.88 8.06 -2.91 -0.02 0.85 16 37 H 0.15 1.90 6.40 -2.91 -0.02 1.88 16 38 H 0.41 9.46 6.37 -92.70 -0.59 8.87 16 39 H 0.03 1.49 8.08 -2.39 -0.02 1.47 16 40 H 0.03 1.39 7.92 -2.39 -0.02 1.37 16 41 H 0.11 2.34 8.14 -2.39 -0.02 2.33 16 42 H 0.06 1.98 7.81 -2.38 -0.02 1.96 16 43 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 44 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 45 H 0.04 2.04 6.94 -2.39 -0.02 2.02 16 46 H -0.01 -0.59 8.06 -2.39 -0.02 -0.61 16 47 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -79.37 375.49 2.58 -76.79 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.37 Total: 16.40 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: 6.74 Total: 14.93 kcal Atomic # 7 Polarization: -126.51 SS G_CDS: -6.50 Total: -133.00 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.06 Total: -24.58 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -79.37 2.58 -76.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028347397.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.662 kcal (2) G-P(sol) polarization free energy of solvation -79.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds