Wall clock time and date at job start Tue Mar 31 2020 11:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 120.00176 * 2 1 4 4 C 1.39048 * 119.99615 * 179.97438 * 2 1 3 5 5 C 1.39212 * 119.93422 * 0.02562 * 4 2 1 6 6 C 1.37606 * 120.07139 * 179.97438 * 5 4 2 7 7 C 1.39799 * 119.93011 * 359.97438 * 6 5 4 8 8 C 1.47518 * 120.07014 * 180.02562 * 7 6 5 9 9 O 1.21598 * 120.00183 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00381 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00394 * 179.97438 * 10 8 7 12 12 C 1.53010 * 109.46984 * 179.97438 * 11 10 8 13 13 H 1.08994 * 110.91432 * 308.90167 * 12 11 10 14 14 C 1.55159 * 111.00026 * 184.99828 * 12 11 10 15 15 C 1.54324 * 102.94134 * 206.42377 * 14 12 11 16 16 N 1.47020 * 107.39983 * 22.11770 * 15 14 12 17 17 C 1.36946 * 125.64749 * 181.10549 * 16 15 14 18 18 H 1.08003 * 119.99807 * 180.02562 * 17 16 15 19 19 C 1.38814 * 119.99708 * 0.02562 * 17 16 15 20 20 N 1.31618 * 120.00158 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99504 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47699 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47286 * 120.00119 * 21 19 17 24 24 H 1.48500 * 109.47131 * 240.00056 * 21 19 17 25 25 C 1.47743 * 108.53125 * 1.18235 * 16 15 14 26 26 C 1.39792 * 119.86090 * 0.26950 * 7 6 5 27 27 C 1.37606 * 119.93012 * 359.47639 * 26 7 6 28 28 H 1.09000 * 109.47376 * 270.00116 * 1 2 3 29 29 H 1.09000 * 109.47282 * 30.00107 * 1 2 3 30 30 H 1.08998 * 109.47352 * 149.99840 * 1 2 3 31 31 H 1.08996 * 109.47273 * 270.00105 * 3 2 1 32 32 H 1.08999 * 109.47019 * 29.99684 * 3 2 1 33 33 H 1.08997 * 109.47555 * 150.00037 * 3 2 1 34 34 H 1.08002 * 119.96863 * 359.97438 * 5 4 2 35 35 H 1.08002 * 120.04110 * 179.97438 * 6 5 4 36 36 H 0.97011 * 119.99999 * 359.97438 * 10 8 7 37 37 H 1.08996 * 109.47343 * 60.00156 * 11 10 8 38 38 H 1.08996 * 109.47121 * 299.99391 * 11 10 8 39 39 H 1.09004 * 110.72010 * 88.06167 * 14 12 11 40 40 H 1.08995 * 110.87585 * 324.86016 * 14 12 11 41 41 H 1.09002 * 109.88322 * 141.61300 * 15 14 12 42 42 H 1.09000 * 109.88025 * 262.62465 * 15 14 12 43 43 H 0.96997 * 119.99987 * 180.02562 * 20 19 17 44 44 H 1.09003 * 110.29227 * 216.94505 * 25 16 15 45 45 H 1.08996 * 110.53057 * 94.67717 * 25 16 15 46 46 H 1.08001 * 120.03829 * 179.72381 * 26 7 6 47 47 H 1.08008 * 119.96683 * 180.24766 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1602 -1.2042 0.0005 5 6 1.4627 -2.4090 0.0005 6 6 2.1477 -3.6024 0.0005 7 6 3.5457 -3.6041 0.0000 8 6 4.2833 -4.8817 -0.0006 9 8 3.6753 -5.9348 -0.0001 10 7 5.6310 -4.8818 -0.0016 11 6 6.3635 -6.1505 -0.0016 12 6 7.8678 -5.8709 -0.0036 13 1 8.1326 -5.1717 -0.7967 14 6 8.6781 -7.1881 -0.1298 15 6 10.0184 -6.8358 0.5491 16 7 9.7709 -5.6980 1.4466 17 6 10.7125 -5.0704 2.2180 18 1 10.4287 -4.2398 2.8473 19 6 12.0316 -5.5018 2.1909 20 7 12.3775 -6.5137 1.4236 21 14 13.3157 -4.6462 3.2436 22 1 12.6754 -3.5472 4.0100 23 1 13.9137 -5.6243 4.1877 24 1 14.3791 -4.0873 2.3706 25 6 8.3372 -5.3483 1.3771 26 6 4.2433 -2.3927 0.0052 27 6 3.5524 -1.2026 -0.0001 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 2.3792 1.5833 -1.0276 32 1 1.6084 2.0283 0.5138 33 1 3.1499 1.1384 0.5138 34 1 0.3826 -2.4071 0.0005 35 1 1.6061 -4.5368 0.0010 36 1 6.1161 -4.0417 -0.0024 37 1 6.0995 -6.7225 -0.8911 38 1 6.1009 -6.7216 0.8888 39 1 8.8326 -7.4469 -1.1774 40 1 8.1808 -8.0021 0.3976 41 1 10.3788 -7.6894 1.1233 42 1 10.7548 -6.5594 -0.2055 43 1 13.2992 -6.8154 1.4050 44 1 8.2083 -4.2676 1.4374 45 1 7.7844 -5.8406 2.1771 46 1 5.3233 -2.3907 0.0093 47 1 4.0908 -0.2663 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028951793.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:53 Heat of formation + Delta-G solvation = 26.397174 kcal Electronic energy + Delta-G solvation = -25660.234738 eV Core-core repulsion = 22036.752436 eV Total energy + Delta-G solvation = -3623.482302 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.30292 -39.08670 -37.57535 -36.26002 -34.59987 -32.53841 -31.45300 -30.67987 -29.57795 -28.59660 -28.15165 -25.97598 -25.13422 -23.53437 -22.47642 -21.89819 -20.36910 -19.93642 -19.63888 -18.21857 -17.04897 -16.65596 -16.37034 -15.61674 -15.51776 -15.24654 -15.06797 -14.68033 -14.44639 -13.98861 -13.88885 -13.75681 -13.45208 -13.12938 -13.09423 -12.61504 -12.58652 -12.44627 -12.31216 -12.28521 -11.95170 -11.71872 -11.34869 -11.03860 -10.87538 -10.79637 -10.35103 -10.14469 -10.10758 -9.96994 -9.84709 -9.66734 -9.61434 -9.20560 -8.86369 -8.58544 -7.63624 -6.80974 -5.69483 -3.02787 0.93818 1.25215 2.68681 2.95771 3.37273 3.40483 3.45789 3.48418 3.87369 4.46394 4.50634 4.52152 4.71127 4.80987 4.86598 4.89045 5.09777 5.13506 5.18525 5.21592 5.27151 5.28595 5.33921 5.39128 5.46838 5.58569 5.72600 5.81043 5.92601 5.94864 6.05216 6.11619 6.15396 6.32572 6.39409 6.48365 6.53039 6.56342 6.58382 6.74921 6.80398 6.95647 7.08110 7.58270 7.66236 7.68753 7.85304 8.27870 8.39246 9.23999 9.84207 10.51110 11.42341 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017067 B = 0.002423 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.220872 B =11553.681769 C =12944.413009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.633 5.633 3 C 0.089 3.911 4 C 0.236 3.764 5 C -0.211 4.211 6 C -0.009 4.009 7 C -0.194 4.194 8 C 0.561 3.439 9 O -0.551 6.551 10 N -0.723 5.723 11 C 0.133 3.867 12 C -0.117 4.117 13 H 0.079 0.921 14 C -0.135 4.135 15 C 0.177 3.823 16 N -0.607 5.607 17 C -0.226 4.226 18 H 0.078 0.922 19 C -0.010 4.010 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.141 3.859 26 C -0.033 4.033 27 C -0.207 4.207 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.127 0.873 35 H 0.134 0.866 36 H 0.399 0.601 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.042 0.958 42 H 0.046 0.954 43 H 0.251 0.749 44 H 0.035 0.965 45 H 0.020 0.980 46 H 0.127 0.873 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.220 13.498 -5.643 27.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.343 5.343 3 C -0.054 4.054 4 C 0.132 3.868 5 C -0.233 4.233 6 C -0.029 4.029 7 C -0.199 4.199 8 C 0.349 3.651 9 O -0.431 6.431 10 N -0.374 5.374 11 C 0.010 3.990 12 C -0.137 4.137 13 H 0.097 0.903 14 C -0.174 4.174 15 C 0.052 3.948 16 N -0.333 5.333 17 C -0.355 4.355 18 H 0.096 0.904 19 C -0.206 4.206 20 N -0.570 5.570 21 Si 0.742 3.258 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.015 3.985 26 C -0.053 4.053 27 C -0.229 4.229 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.145 0.855 35 H 0.152 0.848 36 H 0.235 0.765 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.053 0.947 45 H 0.038 0.962 46 H 0.145 0.855 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -23.498 12.909 -5.588 27.386 hybrid contribution 1.031 0.919 0.564 1.492 sum -22.466 13.828 -5.023 26.855 Atomic orbital electron populations 1.21697 0.79303 1.02887 1.01450 1.46290 1.05306 1.03421 1.79250 1.21707 0.97498 0.84718 1.01472 1.18025 0.91352 0.85755 0.91625 1.20618 0.99784 0.90703 1.12188 1.20986 0.92683 0.97894 0.91344 1.19708 0.94251 0.92729 1.13251 1.18169 0.82027 0.88816 0.76056 1.90748 1.68378 1.33012 1.50950 1.45989 1.06066 1.10275 1.75075 1.21394 0.90585 0.85005 1.02051 1.22607 0.91873 0.99370 0.99849 0.90254 1.22852 0.98570 0.95475 1.00467 1.21143 0.90617 0.90521 0.92534 1.44568 1.02393 1.36171 1.50215 1.19102 0.87695 1.11012 1.17651 0.90448 1.24811 0.97220 0.98559 1.00044 1.69979 1.16999 1.28075 1.41912 0.86044 0.81671 0.78546 0.79499 1.20540 1.21778 1.21790 1.21641 0.86848 0.97077 0.92929 1.21086 0.99541 0.91225 0.93428 1.20599 0.91908 0.98704 1.11732 0.93087 0.91406 0.90992 0.93065 0.91393 0.90887 0.85510 0.84788 0.76540 0.91650 0.91315 0.92001 0.92174 0.93962 0.93564 0.93831 0.94665 0.96192 0.85507 0.85414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.44 10.17 59.85 0.61 1.05 16 2 N -0.63 -4.55 3.39 -187.56 -0.64 -5.19 16 3 C 0.09 0.45 10.17 59.84 0.61 1.06 16 4 C 0.24 2.20 6.55 -83.86 -0.55 1.66 16 5 C -0.21 -2.02 9.18 -39.45 -0.36 -2.38 16 6 C -0.01 -0.11 9.58 -39.23 -0.38 -0.48 16 7 C -0.19 -2.43 5.88 -104.95 -0.62 -3.05 16 8 C 0.56 8.42 7.76 -12.48 -0.10 8.32 16 9 O -0.55 -10.08 16.34 5.28 0.09 -10.00 16 10 N -0.72 -9.98 5.45 -61.35 -0.33 -10.32 16 11 C 0.13 2.02 5.13 -4.04 -0.02 2.00 16 12 C -0.12 -1.98 3.05 -88.47 -0.27 -2.25 16 13 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 14 C -0.13 -2.50 6.42 -24.90 -0.16 -2.66 16 15 C 0.18 4.31 5.37 -3.06 -0.02 4.29 16 16 N -0.61 -15.56 3.41 -169.81 -0.58 -16.14 16 17 C -0.23 -6.34 10.29 -15.05 -0.15 -6.49 16 18 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 19 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 20 N -0.92 -27.30 10.31 55.49 0.57 -26.73 16 21 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 C 0.14 2.88 6.67 -2.35 -0.02 2.86 16 26 C -0.03 -0.35 9.53 -39.23 -0.37 -0.72 16 27 C -0.21 -1.95 9.18 -39.45 -0.36 -2.31 16 28 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.23 8.07 -51.93 -0.42 -0.19 16 30 H 0.07 0.33 6.17 -51.93 -0.32 0.01 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.25 8.07 -51.93 -0.42 -0.17 16 33 H 0.07 0.37 6.17 -51.93 -0.32 0.05 16 34 H 0.13 0.95 6.11 -52.49 -0.32 0.62 16 35 H 0.13 1.54 7.64 -52.49 -0.40 1.14 16 36 H 0.40 4.73 6.49 -40.82 -0.26 4.46 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 1.12 7.96 -51.93 -0.41 0.71 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 1.06 8.04 -51.93 -0.42 0.64 16 41 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 42 H 0.05 1.24 7.37 -51.93 -0.38 0.86 16 43 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.02 0.42 7.90 -51.93 -0.41 0.01 16 46 H 0.13 1.12 6.39 -52.49 -0.34 0.79 16 47 H 0.13 0.96 6.11 -52.48 -0.32 0.64 16 LS Contribution 375.20 15.07 5.65 5.65 Total: -1.00 -34.13 375.20 -9.73 -43.86 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.22 Total: 1.18 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -2.25 Total: 0.50 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -0.98 Total: -58.37 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.13 -9.73 -43.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028951793.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.259 kcal (2) G-P(sol) polarization free energy of solvation -34.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds