Wall clock time and date at job start Tue Mar 31 2020 11:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 120.00176 * 2 1 4 4 C 1.39048 * 119.99615 * 179.97438 * 2 1 3 5 5 C 1.39212 * 119.93422 * 0.02562 * 4 2 1 6 6 C 1.37606 * 120.07139 * 179.97438 * 5 4 2 7 7 C 1.39799 * 119.93011 * 359.97438 * 6 5 4 8 8 C 1.47518 * 120.07014 * 180.02562 * 7 6 5 9 9 O 1.21598 * 120.00183 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00381 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00394 * 179.97438 * 10 8 7 12 12 C 1.53010 * 109.46984 * 179.97438 * 11 10 8 13 13 H 1.08994 * 110.91432 * 308.90167 * 12 11 10 14 14 C 1.55159 * 111.00026 * 184.99828 * 12 11 10 15 15 C 1.54324 * 102.94134 * 206.42377 * 14 12 11 16 16 N 1.47020 * 107.39983 * 22.11770 * 15 14 12 17 17 C 1.36946 * 125.64749 * 181.10549 * 16 15 14 18 18 H 1.08003 * 119.99807 * 180.02562 * 17 16 15 19 19 C 1.38814 * 119.99708 * 0.02562 * 17 16 15 20 20 N 1.31618 * 120.00158 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99504 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47699 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47286 * 120.00119 * 21 19 17 24 24 H 1.48500 * 109.47131 * 240.00056 * 21 19 17 25 25 C 1.47743 * 108.53125 * 1.18235 * 16 15 14 26 26 C 1.39792 * 119.86090 * 0.26950 * 7 6 5 27 27 C 1.37606 * 119.93012 * 359.47639 * 26 7 6 28 28 H 1.09000 * 109.47376 * 270.00116 * 1 2 3 29 29 H 1.09000 * 109.47282 * 30.00107 * 1 2 3 30 30 H 1.08998 * 109.47352 * 149.99840 * 1 2 3 31 31 H 1.08996 * 109.47273 * 270.00105 * 3 2 1 32 32 H 1.08999 * 109.47019 * 29.99684 * 3 2 1 33 33 H 1.08997 * 109.47555 * 150.00037 * 3 2 1 34 34 H 1.08002 * 119.96863 * 359.97438 * 5 4 2 35 35 H 1.08002 * 120.04110 * 179.97438 * 6 5 4 36 36 H 0.97011 * 119.99999 * 359.97438 * 10 8 7 37 37 H 1.08996 * 109.47343 * 60.00156 * 11 10 8 38 38 H 1.08996 * 109.47121 * 299.99391 * 11 10 8 39 39 H 1.09004 * 110.72010 * 88.06167 * 14 12 11 40 40 H 1.08995 * 110.87585 * 324.86016 * 14 12 11 41 41 H 1.09002 * 109.88322 * 141.61300 * 15 14 12 42 42 H 1.09000 * 109.88025 * 262.62465 * 15 14 12 43 43 H 0.96997 * 119.99987 * 180.02562 * 20 19 17 44 44 H 1.09003 * 110.29227 * 216.94505 * 25 16 15 45 45 H 1.08996 * 110.53057 * 94.67717 * 25 16 15 46 46 H 1.08001 * 120.03829 * 179.72381 * 26 7 6 47 47 H 1.08008 * 119.96683 * 180.24766 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1602 -1.2042 0.0005 5 6 1.4627 -2.4090 0.0005 6 6 2.1477 -3.6024 0.0005 7 6 3.5457 -3.6041 0.0000 8 6 4.2833 -4.8817 -0.0006 9 8 3.6753 -5.9348 -0.0001 10 7 5.6310 -4.8818 -0.0016 11 6 6.3635 -6.1505 -0.0016 12 6 7.8678 -5.8709 -0.0036 13 1 8.1326 -5.1717 -0.7967 14 6 8.6781 -7.1881 -0.1298 15 6 10.0184 -6.8358 0.5491 16 7 9.7709 -5.6980 1.4466 17 6 10.7125 -5.0704 2.2180 18 1 10.4287 -4.2398 2.8473 19 6 12.0316 -5.5018 2.1909 20 7 12.3775 -6.5137 1.4236 21 14 13.3157 -4.6462 3.2436 22 1 12.6754 -3.5472 4.0100 23 1 13.9137 -5.6243 4.1877 24 1 14.3791 -4.0873 2.3706 25 6 8.3372 -5.3483 1.3771 26 6 4.2433 -2.3927 0.0052 27 6 3.5524 -1.2026 -0.0001 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 2.3792 1.5833 -1.0276 32 1 1.6084 2.0283 0.5138 33 1 3.1499 1.1384 0.5138 34 1 0.3826 -2.4071 0.0005 35 1 1.6061 -4.5368 0.0010 36 1 6.1161 -4.0417 -0.0024 37 1 6.0995 -6.7225 -0.8911 38 1 6.1009 -6.7216 0.8888 39 1 8.8326 -7.4469 -1.1774 40 1 8.1808 -8.0021 0.3976 41 1 10.3788 -7.6894 1.1233 42 1 10.7548 -6.5594 -0.2055 43 1 13.2992 -6.8154 1.4050 44 1 8.2083 -4.2676 1.4374 45 1 7.7844 -5.8406 2.1771 46 1 5.3233 -2.3907 0.0093 47 1 4.0908 -0.2663 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028951793.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:52 Heat of formation + Delta-G solvation = 4.959033 kcal Electronic energy + Delta-G solvation = -25661.164366 eV Core-core repulsion = 22036.752436 eV Total energy + Delta-G solvation = -3624.411929 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.22735 -40.05387 -39.15395 -36.95875 -36.03670 -34.32896 -32.27322 -31.81246 -31.05842 -29.74802 -29.00710 -27.37889 -26.33366 -25.00051 -23.21721 -22.82683 -21.94111 -21.43448 -20.83818 -19.18575 -18.72133 -17.70635 -17.40564 -16.79254 -16.57809 -16.24049 -16.05249 -15.94196 -15.77164 -15.51974 -14.83861 -14.64391 -14.53055 -14.43529 -13.97626 -13.81241 -13.52942 -13.49067 -13.30664 -13.26693 -13.02439 -12.90755 -12.83794 -12.74779 -12.64405 -11.97023 -11.88259 -11.83995 -11.72517 -11.53382 -11.45375 -10.91041 -10.83817 -10.70431 -10.05514 -9.96772 -8.88852 -8.27572 -7.83877 -5.19410 0.09086 0.50063 1.46525 1.47785 1.58049 1.96829 2.17634 2.26515 2.50268 3.00694 3.34356 3.61359 3.77922 3.82068 3.93513 3.98172 4.04383 4.06924 4.22226 4.38871 4.39953 4.46734 4.52161 4.56347 4.63679 4.69593 4.73253 4.80441 4.83241 4.90751 4.92703 4.93565 5.07046 5.09410 5.09826 5.23397 5.34821 5.37044 5.46860 5.48368 5.55077 5.69111 5.77171 5.79467 6.21089 6.26614 6.44206 6.61205 7.11430 7.28339 7.78686 8.43979 9.26911 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017067 B = 0.002423 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.220872 B =11553.681769 C =12944.413009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.632 5.632 3 C 0.082 3.918 4 C 0.237 3.763 5 C -0.214 4.214 6 C -0.020 4.020 7 C -0.221 4.221 8 C 0.560 3.440 9 O -0.593 6.593 10 N -0.716 5.716 11 C 0.145 3.855 12 C -0.094 4.094 13 H 0.091 0.909 14 C -0.123 4.123 15 C 0.183 3.817 16 N -0.629 5.629 17 C -0.239 4.239 18 H 0.084 0.916 19 C -0.070 4.070 20 N -0.953 5.953 21 Si 0.979 3.021 22 H -0.264 1.264 23 H -0.295 1.295 24 H -0.291 1.291 25 C 0.137 3.863 26 C -0.031 4.031 27 C -0.213 4.213 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.146 0.854 35 H 0.125 0.875 36 H 0.410 0.590 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.003 0.997 42 H 0.014 0.986 43 H 0.246 0.754 44 H 0.049 0.951 45 H 0.018 0.982 46 H 0.141 0.859 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.800 16.224 -5.835 30.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.340 5.340 3 C -0.060 4.060 4 C 0.131 3.869 5 C -0.236 4.236 6 C -0.040 4.040 7 C -0.226 4.226 8 C 0.350 3.650 9 O -0.475 6.475 10 N -0.367 5.367 11 C 0.021 3.979 12 C -0.114 4.114 13 H 0.109 0.891 14 C -0.162 4.162 15 C 0.058 3.942 16 N -0.356 5.356 17 C -0.368 4.368 18 H 0.102 0.898 19 C -0.263 4.263 20 N -0.602 5.602 21 Si 0.808 3.192 22 H -0.188 1.188 23 H -0.222 1.222 24 H -0.218 1.218 25 C 0.012 3.988 26 C -0.051 4.051 27 C -0.235 4.235 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.163 0.837 35 H 0.143 0.857 36 H 0.247 0.753 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.021 0.979 42 H 0.032 0.968 43 H 0.055 0.945 44 H 0.068 0.932 45 H 0.035 0.965 46 H 0.158 0.842 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -25.118 15.702 -5.778 30.181 hybrid contribution 1.410 0.199 0.643 1.562 sum -23.708 15.902 -5.135 29.005 Atomic orbital electron populations 1.21890 0.78006 1.03980 1.02158 1.46606 1.06373 1.03335 1.77733 1.21894 0.97784 0.84138 1.02232 1.18214 0.91669 0.86546 0.90473 1.20776 1.00745 0.90204 1.11878 1.21022 0.92586 0.98399 0.91951 1.19588 0.94556 0.92185 1.16299 1.18567 0.82093 0.89262 0.75043 1.90716 1.69127 1.34596 1.53088 1.45867 1.05885 1.10257 1.74724 1.21158 0.89163 0.85648 1.01964 1.22407 0.92678 0.98296 0.98000 0.89051 1.22722 0.95470 0.96634 1.01331 1.20916 0.93069 0.88910 0.91347 1.44898 1.04270 1.36401 1.50015 1.19516 0.88527 1.11062 1.17704 0.89821 1.25687 0.99384 0.99555 1.01689 1.70205 1.16901 1.29597 1.43520 0.84990 0.78828 0.77673 0.77726 1.18805 1.22199 1.21812 1.21819 0.84128 0.98037 0.94809 1.21227 1.00264 0.90814 0.92793 1.20846 0.92189 0.99110 1.11349 0.92513 0.89504 0.90813 0.92352 0.89620 0.90779 0.83661 0.85718 0.75274 0.90843 0.92414 0.89561 0.91139 0.97889 0.96807 0.94475 0.93237 0.96461 0.84152 0.83409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 10.17 127.77 1.30 1.87 16 2 N -0.63 -7.27 3.39 -747.33 -2.53 -9.80 16 3 C 0.08 0.58 10.17 127.77 1.30 1.88 16 4 C 0.24 3.90 6.55 38.47 0.25 4.15 16 5 C -0.21 -3.80 9.18 22.35 0.21 -3.60 16 6 C -0.02 -0.45 9.58 22.50 0.22 -0.23 16 7 C -0.22 -5.41 5.88 -20.08 -0.12 -5.53 16 8 C 0.56 16.63 7.76 86.69 0.67 17.30 16 9 O -0.59 -21.93 16.34 -4.02 -0.07 -21.99 16 10 N -0.72 -18.84 5.45 -466.28 -2.54 -21.38 16 11 C 0.14 4.18 5.13 86.38 0.44 4.62 16 12 C -0.09 -3.04 3.05 -9.40 -0.03 -3.06 16 13 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 14 C -0.12 -4.45 6.42 31.78 0.20 -4.24 16 15 C 0.18 9.14 5.37 86.73 0.47 9.60 16 16 N -0.63 -32.53 3.41 -691.16 -2.35 -34.88 16 17 C -0.24 -13.48 10.29 84.03 0.86 -12.61 16 18 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 19 C -0.07 -4.06 5.49 84.86 0.47 -3.59 16 20 N -0.95 -58.18 10.31 21.65 0.22 -57.96 16 21 Si 0.98 46.07 29.55 68.60 2.03 48.09 16 22 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 23 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 24 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 25 C 0.14 5.45 6.67 86.79 0.58 6.03 16 26 C -0.03 -0.61 9.53 22.50 0.21 -0.39 16 27 C -0.21 -3.52 9.18 22.36 0.21 -3.31 16 28 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.09 0.29 8.07 -2.39 -0.02 0.27 16 30 H 0.07 0.50 6.17 -2.39 -0.01 0.48 16 31 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.09 0.32 8.07 -2.39 -0.02 0.30 16 33 H 0.07 0.52 6.17 -2.39 -0.01 0.51 16 34 H 0.15 1.91 6.11 -2.91 -0.02 1.90 16 35 H 0.12 2.97 7.64 -2.91 -0.02 2.95 16 36 H 0.41 8.92 6.49 -92.70 -0.60 8.32 16 37 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.06 1.83 7.96 -2.39 -0.02 1.81 16 39 H 0.09 2.73 8.14 -2.38 -0.02 2.71 16 40 H 0.07 2.42 8.04 -2.39 -0.02 2.40 16 41 H 0.00 0.16 7.51 -2.39 -0.02 0.14 16 42 H 0.01 0.76 7.37 -2.39 -0.02 0.75 16 43 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 44 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.02 0.72 7.90 -2.39 -0.02 0.70 16 46 H 0.14 2.19 6.39 -2.91 -0.02 2.17 16 47 H 0.15 1.78 6.11 -2.91 -0.02 1.76 16 Total: -1.00 -75.71 375.20 2.37 -73.34 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.37 Total: 15.72 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 7.24 Total: 8.87 kcal Atomic # 7 Polarization: -116.82 SS G_CDS: -7.21 Total: -124.03 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.07 Total: -21.99 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -75.71 2.37 -73.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028951793.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.296 kcal (2) G-P(sol) polarization free energy of solvation -75.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds