Wall clock time and date at job start Tue Mar 31 2020 11:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 119.99775 * 2 1 4 4 C 1.39710 * 119.99968 * 180.02562 * 2 1 3 5 5 C 1.39022 * 120.00034 * 174.29715 * 4 2 1 6 6 C 1.38202 * 120.21642 * 179.97438 * 5 4 2 7 7 C 1.38032 * 120.22942 * 359.71783 * 6 5 4 8 8 C 1.39576 * 120.00083 * 0.55581 * 7 6 5 9 9 C 1.47860 * 120.10645 * 179.72338 * 8 7 6 10 10 O 1.21558 * 119.99905 * 179.72562 * 9 8 7 11 11 N 1.34775 * 120.00183 * 359.72272 * 9 8 7 12 12 C 1.46507 * 120.00031 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.46850 * 180.02562 * 12 11 9 14 14 H 1.08998 * 110.64091 * 51.86364 * 13 12 11 15 15 C 1.55157 * 110.71560 * 175.00040 * 13 12 11 16 16 C 1.54912 * 101.61364 * 154.02465 * 15 13 12 17 17 N 1.47467 * 104.81092 * 323.04224 * 16 15 13 18 18 C 1.36943 * 125.62699 * 204.14310 * 17 16 15 19 19 H 1.08000 * 119.99805 * 179.91607 * 18 17 16 20 20 C 1.38809 * 119.99988 * 359.91342 * 18 17 16 21 21 N 1.31617 * 120.00030 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99904 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47178 * 90.00458 * 22 20 18 24 24 H 1.48500 * 109.47418 * 210.00112 * 22 20 18 25 25 H 1.48505 * 109.47305 * 330.00391 * 22 20 18 26 26 C 1.47018 * 108.72231 * 24.07469 * 17 16 15 27 27 C 1.38639 * 120.00407 * 354.27004 * 4 2 1 28 28 H 1.09001 * 109.47274 * 185.05733 * 1 2 3 29 29 H 1.09001 * 109.46859 * 305.04936 * 1 2 3 30 30 H 1.08997 * 109.47365 * 65.05385 * 1 2 3 31 31 H 1.09007 * 109.47517 * 270.00188 * 3 2 1 32 32 H 1.08998 * 109.47531 * 30.00681 * 3 2 1 33 33 H 1.09005 * 109.47277 * 150.00715 * 3 2 1 34 34 H 1.08001 * 119.89591 * 359.95088 * 5 4 2 35 35 H 1.07998 * 119.88757 * 179.97438 * 6 5 4 36 36 H 1.07993 * 119.99999 * 180.30562 * 7 6 5 37 37 H 0.96996 * 120.00039 * 0.02562 * 11 9 8 38 38 H 1.08997 * 109.46753 * 60.00226 * 12 11 9 39 39 H 1.08995 * 109.46825 * 300.00543 * 12 11 9 40 40 H 1.08995 * 111.00686 * 272.11510 * 15 13 12 41 41 H 1.09001 * 111.00511 * 35.93567 * 15 13 12 42 42 H 1.09002 * 110.36377 * 81.85219 * 16 15 13 43 43 H 1.09004 * 110.36468 * 204.16827 * 16 15 13 44 44 H 0.97010 * 119.99864 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.87536 * 239.55808 * 26 17 16 46 46 H 1.08996 * 109.88294 * 118.39356 * 26 17 16 47 47 H 1.07994 * 120.10979 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1635 -1.2099 -0.0005 5 6 3.5486 -1.2129 -0.1202 6 6 4.2441 -2.4071 -0.1207 7 6 3.5690 -3.6046 0.0034 8 6 2.1780 -3.6129 0.1183 9 6 1.4518 -4.8946 0.2452 10 8 0.2408 -4.8993 0.3502 11 7 2.1326 -6.0578 0.2444 12 6 1.4130 -7.3278 0.3696 13 6 2.4131 -8.4854 0.3417 14 1 3.2064 -8.3255 1.0719 15 6 1.6954 -9.8370 0.5978 16 6 2.6430 -10.8333 -0.1157 17 7 3.1107 -10.1152 -1.3158 18 6 3.5691 -10.6990 -2.4666 19 1 3.8891 -10.0831 -3.2941 20 6 3.6223 -12.0822 -2.5697 21 7 3.2318 -12.8328 -1.5614 22 14 4.2469 -12.8784 -4.1398 23 1 5.7153 -13.0775 -4.0436 24 1 3.5806 -14.1922 -4.3275 25 1 3.9413 -11.9986 -5.2964 26 6 3.0020 -8.6694 -1.0728 27 6 1.4756 -2.4077 0.1188 28 1 -0.3634 -1.0237 0.0906 29 1 -0.3633 0.5902 0.8413 30 1 -0.3634 0.4334 -0.9317 31 1 2.3791 1.5835 -1.0277 32 1 1.6084 2.0284 0.5139 33 1 3.1500 1.1384 0.5137 34 1 4.0828 -0.2789 -0.2134 35 1 5.3200 -2.4032 -0.2144 36 1 4.1166 -4.5354 0.0075 37 1 3.0990 -6.0541 0.1610 38 1 0.7130 -7.4319 -0.4593 39 1 0.8655 -7.3437 1.3119 40 1 1.6350 -10.0512 1.6648 41 1 0.7049 -9.8458 0.1429 42 1 3.4856 -11.0834 0.5290 43 1 2.1008 -11.7353 -0.3996 44 1 3.2687 -13.7995 -1.6336 45 1 2.3395 -8.2182 -1.8117 46 1 3.9886 -8.2092 -1.1264 47 1 0.3997 -2.4075 0.2119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028952390.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:57 Heat of formation + Delta-G solvation = 30.837063 kcal Electronic energy + Delta-G solvation = -25753.160301 eV Core-core repulsion = 22129.870528 eV Total energy + Delta-G solvation = -3623.289774 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.36472 -39.04438 -37.59419 -36.31154 -34.65701 -32.55594 -31.53408 -30.48793 -29.63251 -28.66136 -28.07631 -25.63149 -25.08660 -24.08246 -22.69637 -21.60508 -20.48864 -19.86297 -19.57101 -18.24213 -16.86935 -16.37910 -16.30251 -15.78486 -15.58638 -15.44790 -15.24473 -14.75685 -14.48876 -14.21161 -13.87058 -13.76164 -13.52708 -13.02180 -12.93593 -12.63159 -12.48980 -12.48234 -12.32276 -11.90540 -11.71030 -11.68667 -11.47290 -11.19629 -10.93815 -10.79808 -10.40230 -10.17924 -10.12898 -10.01062 -9.91426 -9.73635 -9.48739 -9.18859 -8.87820 -8.63748 -7.60009 -6.81961 -5.64194 -3.05725 0.77730 1.33123 2.75489 2.89884 3.27811 3.40888 3.45850 3.47971 3.81625 4.49494 4.54579 4.54949 4.68041 4.87081 4.95094 4.98850 5.05921 5.16035 5.21029 5.22095 5.28169 5.30997 5.40122 5.43202 5.44685 5.54457 5.69450 5.73064 5.91033 5.94469 6.09676 6.13578 6.21988 6.27014 6.37033 6.43734 6.51945 6.58185 6.60834 6.75097 6.89218 6.93201 7.15287 7.52814 7.59037 7.64221 7.87055 8.26900 8.37748 9.23479 9.84475 10.49363 11.39803 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023477 B = 0.002275 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.373299 B =12302.479115 C =12882.514477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.640 5.640 3 C 0.095 3.905 4 C 0.204 3.796 5 C -0.176 4.176 6 C -0.078 4.078 7 C -0.143 4.143 8 C -0.083 4.083 9 C 0.554 3.446 10 O -0.543 6.543 11 N -0.718 5.718 12 C 0.132 3.868 13 C -0.115 4.115 14 H 0.076 0.924 15 C -0.135 4.135 16 C 0.152 3.848 17 N -0.605 5.605 18 C -0.222 4.222 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.923 5.923 22 Si 0.915 3.085 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.141 3.859 27 C -0.141 4.141 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.401 0.599 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.012 0.988 43 H 0.107 0.893 44 H 0.252 0.748 45 H 0.025 0.975 46 H 0.018 0.982 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.082 26.318 6.380 27.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.352 5.352 3 C -0.048 4.048 4 C 0.103 3.897 5 C -0.199 4.199 6 C -0.097 4.097 7 C -0.164 4.164 8 C -0.087 4.087 9 C 0.341 3.659 10 O -0.422 6.422 11 N -0.369 5.369 12 C 0.009 3.991 13 C -0.134 4.134 14 H 0.094 0.906 15 C -0.174 4.174 16 C 0.027 3.973 17 N -0.331 5.331 18 C -0.350 4.350 19 H 0.095 0.905 20 C -0.208 4.208 21 N -0.571 5.571 22 Si 0.745 3.255 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.207 1.207 26 C 0.015 3.985 27 C -0.164 4.164 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.237 0.763 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.030 0.970 43 H 0.125 0.875 44 H 0.063 0.937 45 H 0.043 0.957 46 H 0.036 0.964 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.027 26.243 6.356 27.078 hybrid contribution 0.937 -0.327 -0.840 1.300 sum -1.091 25.917 5.515 26.519 Atomic orbital electron populations 1.21743 0.79318 1.03545 1.01017 1.46277 1.05103 1.02924 1.80928 1.21596 0.97133 0.84903 1.01144 1.17708 0.91252 0.85681 0.95065 1.20835 0.92120 0.98875 1.08062 1.20840 0.99808 0.91517 0.97505 1.21121 0.92955 0.98600 1.03710 1.19714 0.93630 0.92925 1.02418 1.18298 0.87066 0.83826 0.76666 1.90750 1.13762 1.87665 1.49979 1.46014 1.11141 1.05977 1.73766 1.21492 0.94706 0.80910 1.02000 1.22445 0.97533 0.94531 0.98892 0.90564 1.23007 0.99863 0.94684 0.99892 1.21944 0.94102 0.95235 0.86022 1.44520 1.75647 0.99056 1.13869 1.19080 1.34912 0.89814 0.91213 0.90540 1.24792 1.01900 0.96024 0.98069 1.69800 1.53407 1.03947 1.29973 0.86068 0.78259 0.78772 0.82375 1.21660 1.21650 1.20709 1.21335 0.96739 0.87749 0.92669 1.20786 1.00534 0.89724 1.05310 0.90022 0.92550 0.92887 0.93420 0.91548 0.91371 0.85765 0.85408 0.85707 0.76297 0.91076 0.91492 0.92112 0.91814 0.96995 0.87533 0.93745 0.95748 0.96386 0.84519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 10.62 59.85 0.64 1.24 16 2 N -0.64 -5.35 3.41 -187.59 -0.64 -5.99 16 3 C 0.10 0.53 10.09 59.84 0.60 1.13 16 4 C 0.20 2.09 6.53 -83.83 -0.55 1.54 16 5 C -0.18 -1.59 9.16 -39.30 -0.36 -1.95 16 6 C -0.08 -0.70 10.02 -39.67 -0.40 -1.10 16 7 C -0.14 -1.50 9.54 -39.16 -0.37 -1.87 16 8 C -0.08 -1.05 5.87 -104.99 -0.62 -1.67 16 9 C 0.55 8.28 7.77 -12.32 -0.10 8.18 16 10 O -0.54 -9.83 16.35 5.31 0.09 -9.74 16 11 N -0.72 -9.84 5.42 -61.24 -0.33 -10.17 16 12 C 0.13 2.01 5.02 -4.04 -0.02 1.99 16 13 C -0.11 -1.93 2.95 -88.79 -0.26 -2.19 16 14 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 15 C -0.14 -2.52 6.53 -24.58 -0.16 -2.68 16 16 C 0.15 3.67 5.89 -2.50 -0.01 3.66 16 17 N -0.60 -15.54 3.40 -170.04 -0.58 -16.12 16 18 C -0.22 -6.23 10.27 -15.06 -0.15 -6.38 16 19 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 20 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 21 N -0.92 -27.00 10.09 55.49 0.56 -26.44 16 22 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C 0.14 2.90 6.76 -3.07 -0.02 2.88 16 27 C -0.14 -1.69 8.86 -38.97 -0.35 -2.04 16 28 H 0.08 0.64 5.31 -51.93 -0.28 0.36 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.27 8.07 -51.93 -0.42 -0.15 16 33 H 0.07 0.33 6.45 -51.93 -0.33 0.00 16 34 H 0.12 0.85 6.29 -52.49 -0.33 0.52 16 35 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.13 1.11 6.40 -52.49 -0.34 0.77 16 37 H 0.40 4.68 6.50 -40.82 -0.27 4.42 16 38 H 0.07 1.19 7.95 -51.93 -0.41 0.78 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 1.19 8.05 -51.93 -0.42 0.77 16 42 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.11 2.91 5.88 -51.93 -0.31 2.61 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.02 0.52 7.70 -51.93 -0.40 0.12 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.14 1.67 5.33 -52.49 -0.28 1.39 16 LS Contribution 374.16 15.07 5.64 5.64 Total: -1.00 -33.43 374.16 -9.64 -43.07 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.13 Total: 2.27 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -2.23 Total: 0.30 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -0.99 Total: -58.72 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.43 -9.64 -43.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028952390.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.908 kcal (2) G-P(sol) polarization free energy of solvation -33.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds